data_2ZJ4 # _model_server_result.job_id HNBe0V3lLI0flJBU65ojLg _model_server_result.datetime_utc '2024-11-07 18:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2ZJ4 # _exptl.entry_id 2ZJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.167 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZJ4 _cell.length_a 78.927 _cell.length_b 78.927 _cell.length_c 277.323 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 78.927 78.927 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H16 N O8 P' _chem_comp.formula_weight 261.167 _chem_comp.id AGP _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AGP sing 1 n n C1 C2 AGP sing 2 n n C1 H11 AGP sing 3 n n C1 H12 AGP sing 4 n n O1 HO1 AGP sing 5 n n C2 N2 AGP sing 6 n n C2 C3 AGP sing 7 n n C2 H2 AGP sing 8 n n N2 HN21 AGP sing 9 n n N2 HN22 AGP sing 10 n n C3 O3 AGP sing 11 n n C3 C4 AGP sing 12 n n C3 H3 AGP sing 13 n n O3 HO3 AGP sing 14 n n C4 O4 AGP sing 15 n n C4 C5 AGP sing 16 n n C4 H4 AGP sing 17 n n O4 HO4 AGP sing 18 n n C5 O5 AGP sing 19 n n C5 C6 AGP sing 20 n n C5 H5 AGP sing 21 n n O5 HO5 AGP sing 22 n n C6 O6 AGP sing 23 n n C6 H61 AGP sing 24 n n C6 H62 AGP sing 25 n n O6 P AGP sing 26 n n P O1P AGP doub 27 n n P O2P AGP sing 28 n n P O3P AGP sing 29 n n O2P HOP2 AGP sing 30 n n O3P HOP3 AGP sing 31 n n # _atom_sites.entry_id 2ZJ4 _atom_sites.fract_transf_matrix[1][1] 0.01267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGP A 1 1 1 AGP AGP . C 3 HOH A 1 681 681 HOH HOH . C 3 HOH A 2 682 682 HOH HOH . C 3 HOH A 3 683 683 HOH HOH . C 3 HOH A 4 684 684 HOH HOH . C 3 HOH A 5 685 685 HOH HOH . C 3 HOH A 6 686 686 HOH HOH . C 3 HOH A 7 687 687 HOH HOH . C 3 HOH A 8 688 688 HOH HOH . C 3 HOH A 9 689 689 HOH HOH . C 3 HOH A 10 690 690 HOH HOH . C 3 HOH A 11 691 691 HOH HOH . C 3 HOH A 12 692 692 HOH HOH . C 3 HOH A 13 693 693 HOH HOH . C 3 HOH A 14 694 694 HOH HOH . C 3 HOH A 15 695 695 HOH HOH . C 3 HOH A 16 696 696 HOH HOH . C 3 HOH A 17 697 697 HOH HOH . C 3 HOH A 18 698 698 HOH HOH . C 3 HOH A 19 699 699 HOH HOH . C 3 HOH A 20 700 700 HOH HOH . C 3 HOH A 21 701 701 HOH HOH . C 3 HOH A 22 702 702 HOH HOH . C 3 HOH A 23 703 703 HOH HOH . C 3 HOH A 24 704 704 HOH HOH . C 3 HOH A 25 705 705 HOH HOH . C 3 HOH A 26 706 706 HOH HOH . C 3 HOH A 27 707 707 HOH HOH . C 3 HOH A 28 708 708 HOH HOH . C 3 HOH A 29 709 709 HOH HOH . C 3 HOH A 30 710 710 HOH HOH . C 3 HOH A 31 711 711 HOH HOH . C 3 HOH A 32 712 712 HOH HOH . C 3 HOH A 33 713 713 HOH HOH . C 3 HOH A 34 714 714 HOH HOH . C 3 HOH A 35 715 715 HOH HOH . C 3 HOH A 36 716 716 HOH HOH . C 3 HOH A 37 717 717 HOH HOH . C 3 HOH A 38 718 718 HOH HOH . C 3 HOH A 39 719 719 HOH HOH . C 3 HOH A 40 720 720 HOH HOH . C 3 HOH A 41 721 721 HOH HOH . C 3 HOH A 42 722 722 HOH HOH . C 3 HOH A 43 723 723 HOH HOH . C 3 HOH A 44 724 724 HOH HOH . C 3 HOH A 45 725 725 HOH HOH . C 3 HOH A 46 726 726 HOH HOH . C 3 HOH A 47 727 727 HOH HOH . C 3 HOH A 48 728 728 HOH HOH . C 3 HOH A 49 729 729 HOH HOH . C 3 HOH A 50 730 730 HOH HOH . C 3 HOH A 51 731 731 HOH HOH . C 3 HOH A 52 732 732 HOH HOH . C 3 HOH A 53 733 733 HOH HOH . C 3 HOH A 54 734 734 HOH HOH . C 3 HOH A 55 735 735 HOH HOH . C 3 HOH A 56 736 736 HOH HOH . C 3 HOH A 57 737 737 HOH HOH . C 3 HOH A 58 738 738 HOH HOH . C 3 HOH A 59 739 739 HOH HOH . C 3 HOH A 60 740 740 HOH HOH . C 3 HOH A 61 741 741 HOH HOH . C 3 HOH A 62 742 742 HOH HOH . C 3 HOH A 63 743 743 HOH HOH . C 3 HOH A 64 744 744 HOH HOH . C 3 HOH A 65 745 745 HOH HOH . C 3 HOH A 66 746 746 HOH HOH . C 3 HOH A 67 747 747 HOH HOH . C 3 HOH A 68 748 748 HOH HOH . C 3 HOH A 69 749 749 HOH HOH . C 3 HOH A 70 750 750 HOH HOH . C 3 HOH A 71 751 751 HOH HOH . C 3 HOH A 72 752 752 HOH HOH . C 3 HOH A 73 753 753 HOH HOH . C 3 HOH A 74 754 754 HOH HOH . C 3 HOH A 75 755 755 HOH HOH . C 3 HOH A 76 756 756 HOH HOH . C 3 HOH A 77 757 757 HOH HOH . C 3 HOH A 78 758 758 HOH HOH . C 3 HOH A 79 759 759 HOH HOH . C 3 HOH A 80 760 760 HOH HOH . C 3 HOH A 81 761 761 HOH HOH . C 3 HOH A 82 762 762 HOH HOH . C 3 HOH A 83 763 763 HOH HOH . C 3 HOH A 84 764 764 HOH HOH . C 3 HOH A 85 765 765 HOH HOH . C 3 HOH A 86 766 766 HOH HOH . C 3 HOH A 87 767 767 HOH HOH . C 3 HOH A 88 768 768 HOH HOH . C 3 HOH A 89 769 769 HOH HOH . C 3 HOH A 90 770 770 HOH HOH . C 3 HOH A 91 771 771 HOH HOH . C 3 HOH A 92 772 772 HOH HOH . C 3 HOH A 93 773 773 HOH HOH . C 3 HOH A 94 774 774 HOH HOH . C 3 HOH A 95 775 775 HOH HOH . C 3 HOH A 96 776 776 HOH HOH . C 3 HOH A 97 777 777 HOH HOH . C 3 HOH A 98 778 778 HOH HOH . C 3 HOH A 99 779 779 HOH HOH . C 3 HOH A 100 780 780 HOH HOH . C 3 HOH A 101 781 781 HOH HOH . C 3 HOH A 102 782 782 HOH HOH . C 3 HOH A 103 783 783 HOH HOH . C 3 HOH A 104 784 784 HOH HOH . C 3 HOH A 105 785 785 HOH HOH . C 3 HOH A 106 786 786 HOH HOH . C 3 HOH A 107 787 787 HOH HOH . C 3 HOH A 108 788 788 HOH HOH . C 3 HOH A 109 789 789 HOH HOH . C 3 HOH A 110 790 790 HOH HOH . C 3 HOH A 111 791 791 HOH HOH . C 3 HOH A 112 792 792 HOH HOH . C 3 HOH A 113 793 793 HOH HOH . C 3 HOH A 114 794 794 HOH HOH . C 3 HOH A 115 795 795 HOH HOH . C 3 HOH A 116 796 796 HOH HOH . C 3 HOH A 117 797 797 HOH HOH . C 3 HOH A 118 798 798 HOH HOH . C 3 HOH A 119 799 799 HOH HOH . C 3 HOH A 120 800 800 HOH HOH . C 3 HOH A 121 801 801 HOH HOH . C 3 HOH A 122 802 802 HOH HOH . C 3 HOH A 123 803 803 HOH HOH . C 3 HOH A 124 804 804 HOH HOH . C 3 HOH A 125 805 805 HOH HOH . C 3 HOH A 126 806 806 HOH HOH . C 3 HOH A 127 807 807 HOH HOH . C 3 HOH A 128 808 808 HOH HOH . C 3 HOH A 129 809 809 HOH HOH . C 3 HOH A 130 810 810 HOH HOH . C 3 HOH A 131 811 811 HOH HOH . C 3 HOH A 132 812 812 HOH HOH . C 3 HOH A 133 813 813 HOH HOH . C 3 HOH A 134 814 814 HOH HOH . C 3 HOH A 135 815 815 HOH HOH . C 3 HOH A 136 816 816 HOH HOH . C 3 HOH A 137 817 817 HOH HOH . C 3 HOH A 138 818 818 HOH HOH . C 3 HOH A 139 819 819 HOH HOH . C 3 HOH A 140 820 820 HOH HOH . C 3 HOH A 141 821 821 HOH HOH . C 3 HOH A 142 822 822 HOH HOH . C 3 HOH A 143 823 823 HOH HOH . C 3 HOH A 144 824 824 HOH HOH . C 3 HOH A 145 825 825 HOH HOH . C 3 HOH A 146 826 826 HOH HOH . C 3 HOH A 147 827 827 HOH HOH . C 3 HOH A 148 828 828 HOH HOH . C 3 HOH A 149 829 829 HOH HOH . C 3 HOH A 150 830 830 HOH HOH . C 3 HOH A 151 831 831 HOH HOH . C 3 HOH A 152 832 832 HOH HOH . C 3 HOH A 153 833 833 HOH HOH . C 3 HOH A 154 834 834 HOH HOH . C 3 HOH A 155 835 835 HOH HOH . C 3 HOH A 156 836 836 HOH HOH . C 3 HOH A 157 837 837 HOH HOH . C 3 HOH A 158 838 838 HOH HOH . C 3 HOH A 159 839 839 HOH HOH . C 3 HOH A 160 840 840 HOH HOH . C 3 HOH A 161 841 841 HOH HOH . C 3 HOH A 162 842 842 HOH HOH . C 3 HOH A 163 843 843 HOH HOH . C 3 HOH A 164 844 844 HOH HOH . C 3 HOH A 165 845 845 HOH HOH . C 3 HOH A 166 846 846 HOH HOH . C 3 HOH A 167 847 847 HOH HOH . C 3 HOH A 168 848 848 HOH HOH . C 3 HOH A 169 849 849 HOH HOH . C 3 HOH A 170 850 850 HOH HOH . C 3 HOH A 171 851 851 HOH HOH . C 3 HOH A 172 852 852 HOH HOH . C 3 HOH A 173 853 853 HOH HOH . C 3 HOH A 174 854 854 HOH HOH . C 3 HOH A 175 855 855 HOH HOH . C 3 HOH A 176 856 856 HOH HOH . C 3 HOH A 177 857 857 HOH HOH . C 3 HOH A 178 858 858 HOH HOH . C 3 HOH A 179 859 859 HOH HOH . C 3 HOH A 180 860 860 HOH HOH . C 3 HOH A 181 861 861 HOH HOH . C 3 HOH A 182 862 862 HOH HOH . C 3 HOH A 183 863 863 HOH HOH . C 3 HOH A 184 864 864 HOH HOH . C 3 HOH A 185 865 865 HOH HOH . C 3 HOH A 186 866 866 HOH HOH . C 3 HOH A 187 867 867 HOH HOH . C 3 HOH A 188 868 868 HOH HOH . C 3 HOH A 189 869 869 HOH HOH . C 3 HOH A 190 870 870 HOH HOH . C 3 HOH A 191 871 871 HOH HOH . C 3 HOH A 192 872 872 HOH HOH . C 3 HOH A 193 873 873 HOH HOH . C 3 HOH A 194 874 874 HOH HOH . C 3 HOH A 195 875 875 HOH HOH . C 3 HOH A 196 876 876 HOH HOH . C 3 HOH A 197 877 877 HOH HOH . C 3 HOH A 198 878 878 HOH HOH . C 3 HOH A 199 879 879 HOH HOH . C 3 HOH A 200 880 880 HOH HOH . C 3 HOH A 201 881 881 HOH HOH . C 3 HOH A 202 882 882 HOH HOH . C 3 HOH A 203 883 883 HOH HOH . C 3 HOH A 204 884 884 HOH HOH . C 3 HOH A 205 885 885 HOH HOH . C 3 HOH A 206 886 886 HOH HOH . C 3 HOH A 207 887 887 HOH HOH . C 3 HOH A 208 888 888 HOH HOH . C 3 HOH A 209 889 889 HOH HOH . C 3 HOH A 210 890 890 HOH HOH . C 3 HOH A 211 891 891 HOH HOH . C 3 HOH A 212 892 892 HOH HOH . C 3 HOH A 213 893 893 HOH HOH . C 3 HOH A 214 894 894 HOH HOH . C 3 HOH A 215 895 895 HOH HOH . C 3 HOH A 216 896 897 HOH HOH . C 3 HOH A 217 897 898 HOH HOH . C 3 HOH A 218 898 899 HOH HOH . C 3 HOH A 219 899 900 HOH HOH . C 3 HOH A 220 900 901 HOH HOH . C 3 HOH A 221 901 902 HOH HOH . C 3 HOH A 222 902 903 HOH HOH . C 3 HOH A 223 903 905 HOH HOH . C 3 HOH A 224 904 910 HOH HOH . C 3 HOH A 225 905 911 HOH HOH . C 3 HOH A 226 906 912 HOH HOH . C 3 HOH A 227 907 913 HOH HOH . C 3 HOH A 228 908 915 HOH HOH . C 3 HOH A 229 909 916 HOH HOH . C 3 HOH A 230 910 918 HOH HOH . C 3 HOH A 231 911 921 HOH HOH . C 3 HOH A 232 912 922 HOH HOH . C 3 HOH A 233 913 923 HOH HOH . C 3 HOH A 234 914 924 HOH HOH . C 3 HOH A 235 915 925 HOH HOH . C 3 HOH A 236 916 927 HOH HOH . C 3 HOH A 237 917 928 HOH HOH . C 3 HOH A 238 918 931 HOH HOH . C 3 HOH A 239 919 933 HOH HOH . C 3 HOH A 240 920 934 HOH HOH . C 3 HOH A 241 921 935 HOH HOH . C 3 HOH A 242 922 936 HOH HOH . C 3 HOH A 243 923 937 HOH HOH . C 3 HOH A 244 924 938 HOH HOH . C 3 HOH A 245 925 939 HOH HOH . C 3 HOH A 246 926 940 HOH HOH . C 3 HOH A 247 927 941 HOH HOH . C 3 HOH A 248 928 942 HOH HOH . C 3 HOH A 249 929 943 HOH HOH . C 3 HOH A 250 930 944 HOH HOH . C 3 HOH A 251 931 945 HOH HOH . C 3 HOH A 252 932 947 HOH HOH . C 3 HOH A 253 933 948 HOH HOH . C 3 HOH A 254 934 952 HOH HOH . C 3 HOH A 255 935 953 HOH HOH . C 3 HOH A 256 936 954 HOH HOH . C 3 HOH A 257 937 955 HOH HOH . C 3 HOH A 258 938 956 HOH HOH . C 3 HOH A 259 939 957 HOH HOH . C 3 HOH A 260 940 958 HOH HOH . C 3 HOH A 261 941 959 HOH HOH . C 3 HOH A 262 942 960 HOH HOH . C 3 HOH A 263 943 961 HOH HOH . C 3 HOH A 264 944 962 HOH HOH . C 3 HOH A 265 945 963 HOH HOH . C 3 HOH A 266 946 964 HOH HOH . C 3 HOH A 267 947 965 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AGP . . . B 2 72.022 26.18 7.332 1 19.09 ? C1 AGP 1 A 1 HETATM 2 O O1 AGP . . . B 2 72.66 25.334 8.27 1 19.96 ? O1 AGP 1 A 1 HETATM 3 C C2 AGP . . . B 2 72.773 26.416 6.049 1 17.9 ? C2 AGP 1 A 1 HETATM 4 N N2 AGP . . . B 2 73.992 27.203 6.349 1 17.6 ? N2 AGP 1 A 1 HETATM 5 C C3 AGP . . . B 2 71.885 27.097 4.972 1 16.92 ? C3 AGP 1 A 1 HETATM 6 O O3 AGP . . . B 2 70.836 26.223 4.612 1 14.82 ? O3 AGP 1 A 1 HETATM 7 C C4 AGP . . . B 2 71.306 28.487 5.325 1 16.57 ? C4 AGP 1 A 1 HETATM 8 O O4 AGP . . . B 2 70.175 28.364 6.163 1 16.38 ? O4 AGP 1 A 1 HETATM 9 C C5 AGP . . . B 2 70.977 29.278 4.054 1 19.33 ? C5 AGP 1 A 1 HETATM 10 O O5 AGP . . . B 2 72.148 29.512 3.238 1 18.45 ? O5 AGP 1 A 1 HETATM 11 C C6 AGP . . . B 2 70.292 30.615 4.316 1 19.05 ? C6 AGP 1 A 1 HETATM 12 O O6 AGP . . . B 2 71.119 31.493 5.091 1 19.88 ? O6 AGP 1 A 1 HETATM 13 P P AGP . . . B 2 70.469 32.716 5.947 1 18.67 ? P AGP 1 A 1 HETATM 14 O O1P AGP . . . B 2 71.669 33.553 6.28 1 17 ? O1P AGP 1 A 1 HETATM 15 O O2P AGP . . . B 2 69.529 33.484 5.024 1 18.09 ? O2P AGP 1 A 1 HETATM 16 O O3P AGP . . . B 2 69.733 32.02 7.093 1 18.09 ? O3P AGP 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #