data_2ZJ5 # _model_server_result.job_id px7J7gyTh8SDzjYGje6WCA _model_server_result.datetime_utc '2025-02-05 06:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 2ZJ5 # _exptl.entry_id 2ZJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.22 _cell.angle_gamma 90 _cell.entry_id 2ZJ5 _cell.length_a 117.205 _cell.length_b 83.535 _cell.length_c 96.038 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.42605 0 82.130102 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2ZJ5 _atom_sites.fract_transf_matrix[1][1] 0.008532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 902 SO4 SO4 . D 2 SO4 A 1 903 903 SO4 SO4 . E 2 SO4 A 1 904 904 SO4 SO4 . F 2 SO4 A 1 905 905 SO4 SO4 . G 3 ADP A 1 801 801 ADP ADP . H 4 HOH A 1 1001 1001 HOH HOH . H 4 HOH A 2 1002 1002 HOH HOH . H 4 HOH A 3 1003 1003 HOH HOH . H 4 HOH A 4 1004 1004 HOH HOH . H 4 HOH A 5 1005 1005 HOH HOH . H 4 HOH A 6 1006 1006 HOH HOH . H 4 HOH A 7 1007 1007 HOH HOH . H 4 HOH A 8 1008 1008 HOH HOH . H 4 HOH A 9 1009 1009 HOH HOH . H 4 HOH A 10 1010 1010 HOH HOH . H 4 HOH A 11 1011 1011 HOH HOH . H 4 HOH A 12 1012 1012 HOH HOH . H 4 HOH A 13 1013 1013 HOH HOH . H 4 HOH A 14 1014 1014 HOH HOH . H 4 HOH A 15 1015 1015 HOH HOH . H 4 HOH A 16 1016 1016 HOH HOH . H 4 HOH A 17 1017 1017 HOH HOH . H 4 HOH A 18 1018 1018 HOH HOH . H 4 HOH A 19 1019 1019 HOH HOH . H 4 HOH A 20 1020 1020 HOH HOH . H 4 HOH A 21 1021 1021 HOH HOH . H 4 HOH A 22 1022 1022 HOH HOH . H 4 HOH A 23 1023 1023 HOH HOH . H 4 HOH A 24 1024 1024 HOH HOH . H 4 HOH A 25 1025 1025 HOH HOH . H 4 HOH A 26 1026 1026 HOH HOH . H 4 HOH A 27 1027 1027 HOH HOH . H 4 HOH A 28 1028 1028 HOH HOH . H 4 HOH A 29 1029 1029 HOH HOH . H 4 HOH A 30 1030 1030 HOH HOH . H 4 HOH A 31 1031 1031 HOH HOH . H 4 HOH A 32 1032 1032 HOH HOH . H 4 HOH A 33 1033 1033 HOH HOH . H 4 HOH A 34 1034 1034 HOH HOH . H 4 HOH A 35 1035 1035 HOH HOH . H 4 HOH A 36 1036 1036 HOH HOH . H 4 HOH A 37 1037 1037 HOH HOH . H 4 HOH A 38 1038 1038 HOH HOH . H 4 HOH A 39 1039 1039 HOH HOH . H 4 HOH A 40 1040 1040 HOH HOH . H 4 HOH A 41 1041 1041 HOH HOH . H 4 HOH A 42 1042 1042 HOH HOH . H 4 HOH A 43 1043 1043 HOH HOH . H 4 HOH A 44 1044 1044 HOH HOH . H 4 HOH A 45 1045 1045 HOH HOH . H 4 HOH A 46 1046 1046 HOH HOH . H 4 HOH A 47 1047 1047 HOH HOH . H 4 HOH A 48 1048 1048 HOH HOH . H 4 HOH A 49 1049 1049 HOH HOH . H 4 HOH A 50 1050 1050 HOH HOH . H 4 HOH A 51 1051 1051 HOH HOH . H 4 HOH A 52 1052 1052 HOH HOH . H 4 HOH A 53 1053 1053 HOH HOH . H 4 HOH A 54 1054 1054 HOH HOH . H 4 HOH A 55 1055 1055 HOH HOH . H 4 HOH A 56 1056 1056 HOH HOH . H 4 HOH A 57 1057 1057 HOH HOH . H 4 HOH A 58 1058 1058 HOH HOH . H 4 HOH A 59 1059 1059 HOH HOH . H 4 HOH A 60 1060 1060 HOH HOH . H 4 HOH A 61 1061 1061 HOH HOH . H 4 HOH A 62 1062 1062 HOH HOH . H 4 HOH A 63 1063 1063 HOH HOH . H 4 HOH A 64 1064 1064 HOH HOH . H 4 HOH A 65 1065 1065 HOH HOH . H 4 HOH A 66 1066 1066 HOH HOH . H 4 HOH A 67 1067 1067 HOH HOH . H 4 HOH A 68 1068 1068 HOH HOH . H 4 HOH A 69 1069 1069 HOH HOH . H 4 HOH A 70 1070 1070 HOH HOH . H 4 HOH A 71 1071 1071 HOH HOH . H 4 HOH A 72 1072 1072 HOH HOH . H 4 HOH A 73 1073 1073 HOH HOH . H 4 HOH A 74 1074 1074 HOH HOH . H 4 HOH A 75 1075 1075 HOH HOH . H 4 HOH A 76 1076 1076 HOH HOH . H 4 HOH A 77 1077 1077 HOH HOH . H 4 HOH A 78 1078 1078 HOH HOH . H 4 HOH A 79 1079 1079 HOH HOH . H 4 HOH A 80 1080 1080 HOH HOH . H 4 HOH A 81 1081 1081 HOH HOH . H 4 HOH A 82 1082 1082 HOH HOH . H 4 HOH A 83 1083 1083 HOH HOH . H 4 HOH A 84 1084 1084 HOH HOH . H 4 HOH A 85 1085 1085 HOH HOH . H 4 HOH A 86 1086 1086 HOH HOH . H 4 HOH A 87 1087 1087 HOH HOH . H 4 HOH A 88 1088 1088 HOH HOH . H 4 HOH A 89 1089 1089 HOH HOH . H 4 HOH A 90 1090 1090 HOH HOH . H 4 HOH A 91 1091 1091 HOH HOH . H 4 HOH A 92 1092 1092 HOH HOH . H 4 HOH A 93 1093 1093 HOH HOH . H 4 HOH A 94 1094 1094 HOH HOH . H 4 HOH A 95 1095 1095 HOH HOH . H 4 HOH A 96 1096 1096 HOH HOH . H 4 HOH A 97 1097 1097 HOH HOH . H 4 HOH A 98 1098 1098 HOH HOH . H 4 HOH A 99 1099 1099 HOH HOH . H 4 HOH A 100 1100 1100 HOH HOH . H 4 HOH A 101 1101 1101 HOH HOH . H 4 HOH A 102 1102 1102 HOH HOH . H 4 HOH A 103 1103 1103 HOH HOH . H 4 HOH A 104 1104 1104 HOH HOH . H 4 HOH A 105 1105 1105 HOH HOH . H 4 HOH A 106 1106 1106 HOH HOH . H 4 HOH A 107 1107 1107 HOH HOH . H 4 HOH A 108 1108 1108 HOH HOH . H 4 HOH A 109 1109 1109 HOH HOH . H 4 HOH A 110 1110 1110 HOH HOH . H 4 HOH A 111 1111 1111 HOH HOH . H 4 HOH A 112 1112 1112 HOH HOH . H 4 HOH A 113 1113 1113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 8.952 -9.398 21.159 1 112.11 ? PB ADP 801 A 1 HETATM 2 O O1B ADP . . . G 3 8.749 -9.968 22.581 1 31.85 ? O1B ADP 801 A 1 HETATM 3 O O2B ADP . . . G 3 8.566 -7.938 21.065 1 47.73 ? O2B ADP 801 A 1 HETATM 4 O O3B ADP . . . G 3 10.387 -9.714 20.567 1 47.6 ? O3B ADP 801 A 1 HETATM 5 P PA ADP . . . G 3 7.909 -10.405 18.625 1 50.6 ? PA ADP 801 A 1 HETATM 6 O O1A ADP . . . G 3 7.842 -9.021 18.062 1 99.75 ? O1A ADP 801 A 1 HETATM 7 O O2A ADP . . . G 3 6.819 -11.326 18.296 1 80.1 ? O2A ADP 801 A 1 HETATM 8 O O3A ADP . . . G 3 8.01 -10.251 20.236 1 73.7 ? O3A ADP 801 A 1 HETATM 9 O O5' ADP . . . G 3 9.329 -11.015 18.197 1 63.36 ? O5' ADP 801 A 1 HETATM 10 C C5' ADP . . . G 3 9.687 -12.369 18.616 1 73.77 ? C5' ADP 801 A 1 HETATM 11 C C4' ADP . . . G 3 9.321 -13.545 17.687 1 38.65 ? C4' ADP 801 A 1 HETATM 12 O O4' ADP . . . G 3 8.306 -14.337 18.407 1 68.67 ? O4' ADP 801 A 1 HETATM 13 C C3' ADP . . . G 3 8.617 -13.346 16.349 1 80.67 ? C3' ADP 801 A 1 HETATM 14 O O3' ADP . . . G 3 9.591 -13.058 15.316 1 58.95 ? O3' ADP 801 A 1 HETATM 15 C C2' ADP . . . G 3 8.065 -14.839 16.115 1 52.22 ? C2' ADP 801 A 1 HETATM 16 O O2' ADP . . . G 3 9.116 -15.809 15.746 1 111.65 ? O2' ADP 801 A 1 HETATM 17 C C1' ADP . . . G 3 7.55 -15.21 17.542 1 42.96 ? C1' ADP 801 A 1 HETATM 18 N N9 ADP . . . G 3 6.014 -15.063 17.753 1 46.22 ? N9 ADP 801 A 1 HETATM 19 C C8 ADP . . . G 3 5.376 -14.123 18.437 1 50.34 ? C8 ADP 801 A 1 HETATM 20 N N7 ADP . . . G 3 4.096 -14.274 18.43 1 52.42 ? N7 ADP 801 A 1 HETATM 21 C C5 ADP . . . G 3 3.862 -15.415 17.672 1 43.69 ? C5 ADP 801 A 1 HETATM 22 C C6 ADP . . . G 3 2.675 -16.165 17.279 1 28.14 ? C6 ADP 801 A 1 HETATM 23 N N6 ADP . . . G 3 1.409 -15.813 17.653 1 29.26 ? N6 ADP 801 A 1 HETATM 24 N N1 ADP . . . G 3 2.844 -17.279 16.507 1 45.7 ? N1 ADP 801 A 1 HETATM 25 C C2 ADP . . . G 3 4.068 -17.643 16.132 1 36.55 ? C2 ADP 801 A 1 HETATM 26 N N3 ADP . . . G 3 5.217 -17.017 16.446 1 45.43 ? N3 ADP 801 A 1 HETATM 27 C C4 ADP . . . G 3 5.051 -15.907 17.224 1 43.45 ? C4 ADP 801 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #