data_2ZJC # _model_server_result.job_id Zd1DVe2Njv1oevQfdtV5XA _model_server_result.datetime_utc '2024-11-09 02:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":158}' # _entry.id 2ZJC # _exptl.entry_id 2ZJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZJC _cell.length_a 135.873 _cell.length_b 135.873 _cell.length_c 58.023 _cell.Z_PDB 27 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 69 B CYS 69 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 69 C CYS 69 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2ZJC _atom_sites.fract_transf_matrix[1][1] 0.00736 _atom_sites.fract_transf_matrix[1][2] 0.004249 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL B 1 158 1 GOL GOL . E 3 HOH A 1 158 1 HOH HOH . E 3 HOH A 2 164 13 HOH HOH . E 3 HOH A 3 166 15 HOH HOH . E 3 HOH A 4 170 20 HOH HOH . E 3 HOH A 5 171 21 HOH HOH . E 3 HOH A 6 175 26 HOH HOH . E 3 HOH A 7 182 38 HOH HOH . E 3 HOH A 8 187 45 HOH HOH . E 3 HOH A 9 188 46 HOH HOH . E 3 HOH A 10 189 47 HOH HOH . E 3 HOH A 11 192 50 HOH HOH . E 3 HOH A 12 195 53 HOH HOH . E 3 HOH A 13 196 54 HOH HOH . E 3 HOH A 14 197 55 HOH HOH . E 3 HOH A 15 198 57 HOH HOH . E 3 HOH A 16 199 58 HOH HOH . E 3 HOH A 17 200 60 HOH HOH . E 3 HOH A 18 209 70 HOH HOH . E 3 HOH A 19 210 71 HOH HOH . F 3 HOH B 1 159 2 HOH HOH . F 3 HOH B 2 160 4 HOH HOH . F 3 HOH B 3 163 12 HOH HOH . F 3 HOH B 4 167 16 HOH HOH . F 3 HOH B 5 177 30 HOH HOH . F 3 HOH B 6 178 31 HOH HOH . F 3 HOH B 7 184 40 HOH HOH . F 3 HOH B 8 190 48 HOH HOH . F 3 HOH B 9 194 52 HOH HOH . F 3 HOH B 10 201 61 HOH HOH . F 3 HOH B 11 202 62 HOH HOH . F 3 HOH B 12 211 72 HOH HOH . F 3 HOH B 13 212 73 HOH HOH . G 3 HOH C 1 158 3 HOH HOH . G 3 HOH C 2 159 5 HOH HOH . G 3 HOH C 3 160 7 HOH HOH . G 3 HOH C 4 161 8 HOH HOH . G 3 HOH C 5 162 9 HOH HOH . G 3 HOH C 6 165 14 HOH HOH . G 3 HOH C 7 168 18 HOH HOH . G 3 HOH C 8 169 19 HOH HOH . G 3 HOH C 9 172 22 HOH HOH . G 3 HOH C 10 173 24 HOH HOH . G 3 HOH C 11 174 25 HOH HOH . G 3 HOH C 12 176 27 HOH HOH . G 3 HOH C 13 179 32 HOH HOH . G 3 HOH C 14 180 36 HOH HOH . G 3 HOH C 15 181 37 HOH HOH . G 3 HOH C 16 183 39 HOH HOH . G 3 HOH C 17 185 42 HOH HOH . G 3 HOH C 18 186 43 HOH HOH . G 3 HOH C 19 191 49 HOH HOH . G 3 HOH C 20 193 51 HOH HOH . G 3 HOH C 21 203 63 HOH HOH . G 3 HOH C 22 204 64 HOH HOH . G 3 HOH C 23 205 65 HOH HOH . G 3 HOH C 24 206 66 HOH HOH . G 3 HOH C 25 207 67 HOH HOH . G 3 HOH C 26 208 68 HOH HOH . G 3 HOH C 27 213 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -9.263 25.323 5.469 1 32.69 ? C1 GOL 158 B 1 HETATM 2 O O1 GOL . . . D 2 -8.852 24.441 4.406 1 32.88 ? O1 GOL 158 B 1 HETATM 3 C C2 GOL . . . D 2 -9.427 26.748 4.944 1 31.45 ? C2 GOL 158 B 1 HETATM 4 O O2 GOL . . . D 2 -10.252 26.731 3.771 1 31.36 ? O2 GOL 158 B 1 HETATM 5 C C3 GOL . . . D 2 -10.102 27.638 5.97 1 31.31 ? C3 GOL 158 B 1 HETATM 6 O O3 GOL . . . D 2 -9.812 27.247 7.312 1 32.66 ? O3 GOL 158 B 1 # _model_server_stats.io_time_ms 250 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #