data_2ZJF # _model_server_result.job_id kQJgAUPCTRQNfFGbkueq_A _model_server_result.datetime_utc '2024-12-03 06:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":360}' # _entry.id 2ZJF # _exptl.entry_id 2ZJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-DIPHENYLUREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZJF _cell.length_a 66.415 _cell.length_b 66.415 _cell.length_c 156.829 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 78.4145 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H12 N2 O' _chem_comp.formula_weight 212.247 _chem_comp.id BSU _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-DIPHENYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIPHENYLCARBAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C8 BSU sing 76 n n N7 C5 BSU sing 77 n n N7 H22 BSU sing 78 n n C8 N9 BSU sing 79 n n C8 O11 BSU doub 80 n n N9 C10 BSU sing 81 n n N9 H23 BSU sing 82 n n C5 C4 BSU doub 83 n y C5 C6 BSU sing 84 n y C4 C3 BSU sing 85 n y C4 H41 BSU sing 86 n n C3 C2 BSU doub 87 n y C3 H31 BSU sing 88 n n C2 C1 BSU sing 89 n y C2 H21 BSU sing 90 n n C1 C6 BSU doub 91 n y C1 H11 BSU sing 92 n n C6 H61 BSU sing 93 n n C10 C16 BSU doub 94 n y C10 C12 BSU sing 95 n y C16 C15 BSU sing 96 n y C16 H161 BSU sing 97 n n C15 C14 BSU doub 98 n y C15 H151 BSU sing 99 n n C14 C13 BSU sing 100 n y C14 H141 BSU sing 101 n n C13 C12 BSU doub 102 n y C13 H131 BSU sing 103 n n C12 H121 BSU sing 104 n n # _atom_sites.entry_id 2ZJF _atom_sites.fract_transf_matrix[1][1] 0.015057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 357 1 ACT ACT . C 2 ACT A 1 358 2 ACT ACT . D 2 ACT A 1 359 3 ACT ACT . E 3 BSU A 1 360 1 BSU BSU . F 4 HOH A 1 361 1 HOH HOH . F 4 HOH A 2 362 2 HOH HOH . F 4 HOH A 3 363 3 HOH HOH . F 4 HOH A 4 364 4 HOH HOH . F 4 HOH A 5 365 5 HOH HOH . F 4 HOH A 6 366 6 HOH HOH . F 4 HOH A 7 367 7 HOH HOH . F 4 HOH A 8 368 8 HOH HOH . F 4 HOH A 9 369 9 HOH HOH . F 4 HOH A 10 370 10 HOH HOH . F 4 HOH A 11 371 11 HOH HOH . F 4 HOH A 12 372 12 HOH HOH . F 4 HOH A 13 373 13 HOH HOH . F 4 HOH A 14 374 14 HOH HOH . F 4 HOH A 15 375 15 HOH HOH . F 4 HOH A 16 376 16 HOH HOH . F 4 HOH A 17 377 17 HOH HOH . F 4 HOH A 18 378 18 HOH HOH . F 4 HOH A 19 379 19 HOH HOH . F 4 HOH A 20 380 20 HOH HOH . F 4 HOH A 21 381 21 HOH HOH . F 4 HOH A 22 382 22 HOH HOH . F 4 HOH A 23 383 23 HOH HOH . F 4 HOH A 24 384 24 HOH HOH . F 4 HOH A 25 385 25 HOH HOH . F 4 HOH A 26 386 26 HOH HOH . F 4 HOH A 27 387 27 HOH HOH . F 4 HOH A 28 388 28 HOH HOH . F 4 HOH A 29 389 29 HOH HOH . F 4 HOH A 30 390 30 HOH HOH . F 4 HOH A 31 391 31 HOH HOH . F 4 HOH A 32 392 32 HOH HOH . F 4 HOH A 33 393 33 HOH HOH . F 4 HOH A 34 394 34 HOH HOH . F 4 HOH A 35 395 35 HOH HOH . F 4 HOH A 36 396 36 HOH HOH . F 4 HOH A 37 397 37 HOH HOH . F 4 HOH A 38 398 38 HOH HOH . F 4 HOH A 39 399 39 HOH HOH . F 4 HOH A 40 400 40 HOH HOH . F 4 HOH A 41 401 41 HOH HOH . F 4 HOH A 42 402 42 HOH HOH . F 4 HOH A 43 403 43 HOH HOH . F 4 HOH A 44 404 44 HOH HOH . F 4 HOH A 45 405 45 HOH HOH . F 4 HOH A 46 406 46 HOH HOH . F 4 HOH A 47 407 47 HOH HOH . F 4 HOH A 48 408 48 HOH HOH . F 4 HOH A 49 409 49 HOH HOH . F 4 HOH A 50 410 50 HOH HOH . F 4 HOH A 51 411 51 HOH HOH . F 4 HOH A 52 412 52 HOH HOH . F 4 HOH A 53 413 53 HOH HOH . F 4 HOH A 54 414 54 HOH HOH . F 4 HOH A 55 415 55 HOH HOH . F 4 HOH A 56 416 56 HOH HOH . F 4 HOH A 57 417 57 HOH HOH . F 4 HOH A 58 418 58 HOH HOH . F 4 HOH A 59 419 59 HOH HOH . F 4 HOH A 60 420 60 HOH HOH . F 4 HOH A 61 421 61 HOH HOH . F 4 HOH A 62 422 62 HOH HOH . F 4 HOH A 63 423 63 HOH HOH . F 4 HOH A 64 424 64 HOH HOH . F 4 HOH A 65 425 65 HOH HOH . F 4 HOH A 66 426 66 HOH HOH . F 4 HOH A 67 427 67 HOH HOH . F 4 HOH A 68 428 68 HOH HOH . F 4 HOH A 69 429 69 HOH HOH . F 4 HOH A 70 430 70 HOH HOH . F 4 HOH A 71 431 71 HOH HOH . F 4 HOH A 72 432 72 HOH HOH . F 4 HOH A 73 433 73 HOH HOH . F 4 HOH A 74 434 74 HOH HOH . F 4 HOH A 75 435 75 HOH HOH . F 4 HOH A 76 436 76 HOH HOH . F 4 HOH A 77 437 77 HOH HOH . F 4 HOH A 78 438 78 HOH HOH . F 4 HOH A 79 439 79 HOH HOH . F 4 HOH A 80 440 80 HOH HOH . F 4 HOH A 81 441 81 HOH HOH . F 4 HOH A 82 442 82 HOH HOH . F 4 HOH A 83 443 83 HOH HOH . F 4 HOH A 84 444 84 HOH HOH . F 4 HOH A 85 445 85 HOH HOH . F 4 HOH A 86 446 86 HOH HOH . F 4 HOH A 87 447 87 HOH HOH . F 4 HOH A 88 448 88 HOH HOH . F 4 HOH A 89 449 89 HOH HOH . F 4 HOH A 90 450 90 HOH HOH . F 4 HOH A 91 451 91 HOH HOH . F 4 HOH A 92 452 92 HOH HOH . F 4 HOH A 93 453 93 HOH HOH . F 4 HOH A 94 454 94 HOH HOH . F 4 HOH A 95 455 95 HOH HOH . F 4 HOH A 96 456 96 HOH HOH . F 4 HOH A 97 457 97 HOH HOH . F 4 HOH A 98 458 98 HOH HOH . F 4 HOH A 99 459 99 HOH HOH . F 4 HOH A 100 460 100 HOH HOH . F 4 HOH A 101 461 101 HOH HOH . F 4 HOH A 102 462 102 HOH HOH . F 4 HOH A 103 463 103 HOH HOH . F 4 HOH A 104 464 104 HOH HOH . F 4 HOH A 105 465 105 HOH HOH . F 4 HOH A 106 466 106 HOH HOH . F 4 HOH A 107 467 107 HOH HOH . F 4 HOH A 108 468 108 HOH HOH . F 4 HOH A 109 469 109 HOH HOH . F 4 HOH A 110 470 110 HOH HOH . F 4 HOH A 111 471 111 HOH HOH . F 4 HOH A 112 472 112 HOH HOH . F 4 HOH A 113 473 113 HOH HOH . F 4 HOH A 114 474 114 HOH HOH . F 4 HOH A 115 475 115 HOH HOH . F 4 HOH A 116 476 116 HOH HOH . F 4 HOH A 117 477 117 HOH HOH . F 4 HOH A 118 478 118 HOH HOH . F 4 HOH A 119 479 119 HOH HOH . F 4 HOH A 120 480 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 BSU . . . E 3 -3.683 -0.138 19.858 1 40.93 ? N7 BSU 360 A 1 HETATM 2 C C8 BSU . . . E 3 -4.18 1.119 19.861 1 39.94 ? C8 BSU 360 A 1 HETATM 3 N N9 BSU . . . E 3 -3.225 2.072 19.792 1 39.52 ? N9 BSU 360 A 1 HETATM 4 O O11 BSU . . . E 3 -5.383 1.359 19.927 1 43.14 ? O11 BSU 360 A 1 HETATM 5 C C5 BSU . . . E 3 -4.319 -1.335 19.903 1 41.58 ? C5 BSU 360 A 1 HETATM 6 C C4 BSU . . . E 3 -3.438 -2.473 19.908 1 42.14 ? C4 BSU 360 A 1 HETATM 7 C C3 BSU . . . E 3 -3.971 -3.803 19.956 1 42.2 ? C3 BSU 360 A 1 HETATM 8 C C2 BSU . . . E 3 -5.393 -3.99 19.996 1 41.59 ? C2 BSU 360 A 1 HETATM 9 C C1 BSU . . . E 3 -6.284 -2.884 19.991 1 42.56 ? C1 BSU 360 A 1 HETATM 10 C C6 BSU . . . E 3 -5.751 -1.554 19.946 1 42.28 ? C6 BSU 360 A 1 HETATM 11 C C10 BSU . . . E 3 -3.347 3.433 19.784 1 39.95 ? C10 BSU 360 A 1 HETATM 12 C C16 BSU . . . E 3 -4.583 4.197 19.85 1 38.35 ? C16 BSU 360 A 1 HETATM 13 C C15 BSU . . . E 3 -4.57 5.625 19.84 1 39.44 ? C15 BSU 360 A 1 HETATM 14 C C14 BSU . . . E 3 -3.308 6.306 19.763 1 39.57 ? C14 BSU 360 A 1 HETATM 15 C C13 BSU . . . E 3 -2.069 5.57 19.695 1 39.38 ? C13 BSU 360 A 1 HETATM 16 C C12 BSU . . . E 3 -2.098 4.139 19.706 1 37.41 ? C12 BSU 360 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #