data_2ZJH # _model_server_result.job_id URVY8tuSvfw0hE5VKiF_Fw _model_server_result.datetime_utc '2024-11-08 16:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":449}' # _entry.id 2ZJH # _exptl.entry_id 2ZJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.44 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1-benzylpiperidin-4-yl)-4-sulfanylbutanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZJH _cell.length_a 103.596 _cell.length_b 103.596 _cell.length_c 168.741 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 175 A CYS 155 1_555 A SG CYS 379 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 237 A CYS 217 1_555 A SG CYS 402 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C16 H24 N2 O S' _chem_comp.formula_weight 292.44 _chem_comp.id F1H _chem_comp.mon_nstd_flag . _chem_comp.name N-(1-benzylpiperidin-4-yl)-4-sulfanylbutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(1-benzyl-piperidin-4-yl)-4-mercapto-butyramide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 F1H doub 83 n y C16 C15 F1H sing 84 n y C17 C18 F1H sing 85 n y C20 C15 F1H doub 86 n y C20 C19 F1H sing 87 n y C15 C14 F1H sing 88 n n C12 C13 F1H sing 89 n n C12 N11 F1H sing 90 n n C13 C1 F1H sing 91 n n C14 N11 F1H sing 92 n n C10 C9 F1H sing 93 n n C10 N11 F1H sing 94 n n C9 C1 F1H sing 95 n n C7 C6 F1H sing 96 n n C7 S8 F1H sing 97 n n C5 C6 F1H sing 98 n n C5 C3 F1H sing 99 n n C3 O4 F1H doub 100 n n C3 N2 F1H sing 101 n n C1 N2 F1H sing 102 n n C18 C19 F1H doub 103 n y C16 H16 F1H sing 104 n n C17 H17 F1H sing 105 n n C20 H20 F1H sing 106 n n C12 H12 F1H sing 107 n n C12 H12A F1H sing 108 n n C13 H13 F1H sing 109 n n C13 H13A F1H sing 110 n n C14 H14 F1H sing 111 n n C14 H14A F1H sing 112 n n C10 H10 F1H sing 113 n n C10 H10A F1H sing 114 n n C9 H9 F1H sing 115 n n C9 H9A F1H sing 116 n n C7 H7 F1H sing 117 n n C7 H7A F1H sing 118 n n C5 H5 F1H sing 119 n n C5 H5A F1H sing 120 n n C6 H6 F1H sing 121 n n C6 H6A F1H sing 122 n n C1 H1 F1H sing 123 n n S8 HS8 F1H sing 124 n n N2 HN2 F1H sing 125 n n C18 H18 F1H sing 126 n n C19 H19 F1H sing 127 n n # _atom_sites.entry_id 2ZJH _atom_sites.fract_transf_matrix[1][1] 0.009653 _atom_sites.fract_transf_matrix[1][2] 0.005573 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F1H A 1 449 1 F1H FRG . C 3 HOH A 1 450 1 HOH HOH . C 3 HOH A 2 451 2 HOH HOH . C 3 HOH A 3 452 3 HOH HOH . C 3 HOH A 4 453 4 HOH HOH . C 3 HOH A 5 454 5 HOH HOH . C 3 HOH A 6 455 6 HOH HOH . C 3 HOH A 7 456 7 HOH HOH . C 3 HOH A 8 457 8 HOH HOH . C 3 HOH A 9 458 9 HOH HOH . C 3 HOH A 10 459 10 HOH HOH . C 3 HOH A 11 460 11 HOH HOH . C 3 HOH A 12 461 12 HOH HOH . C 3 HOH A 13 462 13 HOH HOH . C 3 HOH A 14 463 14 HOH HOH . C 3 HOH A 15 464 15 HOH HOH . C 3 HOH A 16 465 16 HOH HOH . C 3 HOH A 17 466 17 HOH HOH . C 3 HOH A 18 467 18 HOH HOH . C 3 HOH A 19 468 19 HOH HOH . C 3 HOH A 20 469 20 HOH HOH . C 3 HOH A 21 470 21 HOH HOH . C 3 HOH A 22 471 22 HOH HOH . C 3 HOH A 23 472 23 HOH HOH . C 3 HOH A 24 473 24 HOH HOH . C 3 HOH A 25 474 25 HOH HOH . C 3 HOH A 26 475 26 HOH HOH . C 3 HOH A 27 476 27 HOH HOH . C 3 HOH A 28 477 28 HOH HOH . C 3 HOH A 29 478 29 HOH HOH . C 3 HOH A 30 479 30 HOH HOH . C 3 HOH A 31 480 31 HOH HOH . C 3 HOH A 32 481 32 HOH HOH . C 3 HOH A 33 482 33 HOH HOH . C 3 HOH A 34 483 34 HOH HOH . C 3 HOH A 35 484 35 HOH HOH . C 3 HOH A 36 485 36 HOH HOH . C 3 HOH A 37 486 37 HOH HOH . C 3 HOH A 38 487 38 HOH HOH . C 3 HOH A 39 488 39 HOH HOH . C 3 HOH A 40 489 40 HOH HOH . C 3 HOH A 41 490 41 HOH HOH . C 3 HOH A 42 491 42 HOH HOH . C 3 HOH A 43 492 43 HOH HOH . C 3 HOH A 44 493 44 HOH HOH . C 3 HOH A 45 494 45 HOH HOH . C 3 HOH A 46 495 46 HOH HOH . C 3 HOH A 47 496 47 HOH HOH . C 3 HOH A 48 497 48 HOH HOH . C 3 HOH A 49 498 49 HOH HOH . C 3 HOH A 50 499 50 HOH HOH . C 3 HOH A 51 500 51 HOH HOH . C 3 HOH A 52 501 52 HOH HOH . C 3 HOH A 53 502 53 HOH HOH . C 3 HOH A 54 503 54 HOH HOH . C 3 HOH A 55 504 55 HOH HOH . C 3 HOH A 56 505 56 HOH HOH . C 3 HOH A 57 506 57 HOH HOH . C 3 HOH A 58 507 58 HOH HOH . C 3 HOH A 59 508 59 HOH HOH . C 3 HOH A 60 509 60 HOH HOH . C 3 HOH A 61 510 61 HOH HOH . C 3 HOH A 62 511 62 HOH HOH . C 3 HOH A 63 512 63 HOH HOH . C 3 HOH A 64 513 64 HOH HOH . C 3 HOH A 65 514 65 HOH HOH . C 3 HOH A 66 515 66 HOH HOH . C 3 HOH A 67 516 67 HOH HOH . C 3 HOH A 68 517 68 HOH HOH . C 3 HOH A 69 518 69 HOH HOH . C 3 HOH A 70 519 70 HOH HOH . C 3 HOH A 71 520 71 HOH HOH . C 3 HOH A 72 521 72 HOH HOH . C 3 HOH A 73 522 73 HOH HOH . C 3 HOH A 74 523 74 HOH HOH . C 3 HOH A 75 524 75 HOH HOH . C 3 HOH A 76 525 76 HOH HOH . C 3 HOH A 77 526 77 HOH HOH . C 3 HOH A 78 527 78 HOH HOH . C 3 HOH A 79 528 79 HOH HOH . C 3 HOH A 80 529 80 HOH HOH . C 3 HOH A 81 530 81 HOH HOH . C 3 HOH A 82 531 82 HOH HOH . C 3 HOH A 83 532 83 HOH HOH . C 3 HOH A 84 533 84 HOH HOH . C 3 HOH A 85 534 85 HOH HOH . C 3 HOH A 86 535 86 HOH HOH . C 3 HOH A 87 536 87 HOH HOH . C 3 HOH A 88 537 88 HOH HOH . C 3 HOH A 89 538 89 HOH HOH . C 3 HOH A 90 539 90 HOH HOH . C 3 HOH A 91 540 91 HOH HOH . C 3 HOH A 92 541 92 HOH HOH . C 3 HOH A 93 542 93 HOH HOH . C 3 HOH A 94 543 94 HOH HOH . C 3 HOH A 95 544 95 HOH HOH . C 3 HOH A 96 545 96 HOH HOH . C 3 HOH A 97 546 97 HOH HOH . C 3 HOH A 98 547 98 HOH HOH . C 3 HOH A 99 548 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 F1H . . . B 2 77.977 36.658 21.862 1 68.72 ? C16 F1H 449 A 1 HETATM 2 C C17 F1H . . . B 2 77.96 37.94 22.415 1 69.53 ? C17 F1H 449 A 1 HETATM 3 C C20 F1H . . . B 2 78.47 37.602 19.687 1 69.19 ? C20 F1H 449 A 1 HETATM 4 C C15 F1H . . . B 2 78.227 36.491 20.498 1 68.12 ? C15 F1H 449 A 1 HETATM 5 C C12 F1H . . . B 2 77.1 33.133 19.312 1 61.52 ? C12 F1H 449 A 1 HETATM 6 C C13 F1H . . . B 2 75.916 32.262 19.727 1 60.72 ? C13 F1H 449 A 1 HETATM 7 C C14 F1H . . . B 2 78.248 35.113 19.875 1 66.4 ? C14 F1H 449 A 1 HETATM 8 C C10 F1H . . . B 2 75.837 35.148 19.752 1 63.84 ? C10 F1H 449 A 1 HETATM 9 C C9 F1H . . . B 2 74.631 34.333 20.215 1 62.6 ? C9 F1H 449 A 1 HETATM 10 C C7 F1H . . . B 2 69.011 31.383 19.69 1 54.43 ? C7 F1H 449 A 1 HETATM 11 C C5 F1H . . . B 2 71.469 30.914 19.539 1 58.02 ? C5 F1H 449 A 1 HETATM 12 C C6 F1H . . . B 2 70.22 31.331 18.769 1 56.05 ? C6 F1H 449 A 1 HETATM 13 C C3 F1H . . . B 2 72.696 31.598 18.981 1 58.47 ? C3 F1H 449 A 1 HETATM 14 C C1 F1H . . . B 2 74.61 33.005 19.465 1 60.48 ? C1 F1H 449 A 1 HETATM 15 O O4 F1H . . . B 2 72.935 31.571 17.782 1 58.27 ? O4 F1H 449 A 1 HETATM 16 S S8 F1H . . . B 2 68.943 33.022 20.451 1 52.36 ? S8 F1H 449 A 1 HETATM 17 N N2 F1H . . . B 2 73.475 32.205 19.871 1 58.83 ? N2 F1H 449 A 1 HETATM 18 N N11 F1H . . . B 2 77.022 34.359 20.105 1 63.45 ? N11 F1H 449 A 1 HETATM 19 C C18 F1H . . . B 2 78.201 39.051 21.603 1 69.41 ? C18 F1H 449 A 1 HETATM 20 C C19 F1H . . . B 2 78.453 38.881 20.24 1 69.94 ? C19 F1H 449 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #