data_2ZJJ # _model_server_result.job_id KhYn4B1kyWlLXlHRbf59ew _model_server_result.datetime_utc '2024-10-19 16:44:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":449}' # _entry.id 2ZJJ # _exptl.entry_id 2ZJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.392 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-4-(4-fluorobenzyl)-N-(2-sulfanylethyl)piperazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZJJ _cell.length_a 47.21 _cell.length_b 93.289 _cell.length_c 100.329 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 175 A CYS 155 1_555 A SG CYS 379 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 237 A CYS 217 1_555 A SG CYS 402 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 289 A CYS 269 1_555 A SG CYS 339 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C14 H20 F N3 O S' _chem_comp.formula_weight 297.392 _chem_comp.id F1J _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-4-(4-fluorobenzyl)-N-(2-sulfanylethyl)piperazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid(2-mercapto-ethyl)-amide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C5 F1J sing 83 n n C15 O17 F1J doub 84 n n C15 N16 F1J sing 85 n n C12 C13 F1J doub 86 n y C12 C11 F1J sing 87 n y C13 C8 F1J sing 88 n y C11 C10 F1J doub 89 n y C11 F14 F1J sing 90 n n C10 C9 F1J sing 91 n y C9 C8 F1J doub 92 n y C8 C7 F1J sing 93 n n C7 N3 F1J sing 94 n n C4 C5 F1J sing 95 n n C4 N3 F1J sing 96 n n C5 N6 F1J sing 97 n n C2 C1 F1J sing 98 n n C2 N3 F1J sing 99 n n C1 N6 F1J sing 100 n n N16 C18 F1J sing 101 n n C18 C19 F1J sing 102 n n C19 S20 F1J sing 103 n n C12 H12 F1J sing 104 n n C13 H13 F1J sing 105 n n C10 H10 F1J sing 106 n n C9 H9 F1J sing 107 n n C7 H7 F1J sing 108 n n C7 H7A F1J sing 109 n n C4 H4 F1J sing 110 n n C4 H4A F1J sing 111 n n C5 H5 F1J sing 112 n n C2 H2 F1J sing 113 n n C2 H2A F1J sing 114 n n C1 H1 F1J sing 115 n n C1 H1A F1J sing 116 n n N16 HN16 F1J sing 117 n n C18 H18 F1J sing 118 n n C18 H18A F1J sing 119 n n C19 H19 F1J sing 120 n n C19 H19A F1J sing 121 n n S20 HS20 F1J sing 122 n n N6 HN6 F1J sing 123 n n # _atom_sites.entry_id 2ZJJ _atom_sites.fract_transf_matrix[1][1] 0.021182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F1J A 1 449 1 F1J FRG . C 3 HOH A 1 450 1 HOH HOH . C 3 HOH A 2 451 2 HOH HOH . C 3 HOH A 3 452 3 HOH HOH . C 3 HOH A 4 453 4 HOH HOH . C 3 HOH A 5 454 5 HOH HOH . C 3 HOH A 6 455 6 HOH HOH . C 3 HOH A 7 456 7 HOH HOH . C 3 HOH A 8 457 8 HOH HOH . C 3 HOH A 9 458 9 HOH HOH . C 3 HOH A 10 459 10 HOH HOH . C 3 HOH A 11 460 11 HOH HOH . C 3 HOH A 12 461 12 HOH HOH . C 3 HOH A 13 462 13 HOH HOH . C 3 HOH A 14 463 14 HOH HOH . C 3 HOH A 15 464 15 HOH HOH . C 3 HOH A 16 465 16 HOH HOH . C 3 HOH A 17 466 17 HOH HOH . C 3 HOH A 18 467 18 HOH HOH . C 3 HOH A 19 468 19 HOH HOH . C 3 HOH A 20 469 20 HOH HOH . C 3 HOH A 21 470 21 HOH HOH . C 3 HOH A 22 471 22 HOH HOH . C 3 HOH A 23 472 23 HOH HOH . C 3 HOH A 24 473 24 HOH HOH . C 3 HOH A 25 474 25 HOH HOH . C 3 HOH A 26 475 26 HOH HOH . C 3 HOH A 27 476 27 HOH HOH . C 3 HOH A 28 477 28 HOH HOH . C 3 HOH A 29 478 29 HOH HOH . C 3 HOH A 30 479 30 HOH HOH . C 3 HOH A 31 480 31 HOH HOH . C 3 HOH A 32 481 32 HOH HOH . C 3 HOH A 33 482 33 HOH HOH . C 3 HOH A 34 483 34 HOH HOH . C 3 HOH A 35 484 35 HOH HOH . C 3 HOH A 36 485 36 HOH HOH . C 3 HOH A 37 486 37 HOH HOH . C 3 HOH A 38 487 38 HOH HOH . C 3 HOH A 39 488 39 HOH HOH . C 3 HOH A 40 489 40 HOH HOH . C 3 HOH A 41 490 41 HOH HOH . C 3 HOH A 42 491 42 HOH HOH . C 3 HOH A 43 492 43 HOH HOH . C 3 HOH A 44 493 44 HOH HOH . C 3 HOH A 45 494 45 HOH HOH . C 3 HOH A 46 495 46 HOH HOH . C 3 HOH A 47 496 47 HOH HOH . C 3 HOH A 48 497 48 HOH HOH . C 3 HOH A 49 498 49 HOH HOH . C 3 HOH A 50 499 50 HOH HOH . C 3 HOH A 51 500 51 HOH HOH . C 3 HOH A 52 501 52 HOH HOH . C 3 HOH A 53 502 53 HOH HOH . C 3 HOH A 54 503 54 HOH HOH . C 3 HOH A 55 504 55 HOH HOH . C 3 HOH A 56 505 56 HOH HOH . C 3 HOH A 57 506 57 HOH HOH . C 3 HOH A 58 507 58 HOH HOH . C 3 HOH A 59 508 59 HOH HOH . C 3 HOH A 60 509 60 HOH HOH . C 3 HOH A 61 510 61 HOH HOH . C 3 HOH A 62 511 62 HOH HOH . C 3 HOH A 63 512 63 HOH HOH . C 3 HOH A 64 513 64 HOH HOH . C 3 HOH A 65 514 65 HOH HOH . C 3 HOH A 66 515 66 HOH HOH . C 3 HOH A 67 516 67 HOH HOH . C 3 HOH A 68 517 68 HOH HOH . C 3 HOH A 69 518 69 HOH HOH . C 3 HOH A 70 519 70 HOH HOH . C 3 HOH A 71 520 71 HOH HOH . C 3 HOH A 72 521 72 HOH HOH . C 3 HOH A 73 522 73 HOH HOH . C 3 HOH A 74 523 74 HOH HOH . C 3 HOH A 75 524 75 HOH HOH . C 3 HOH A 76 525 76 HOH HOH . C 3 HOH A 77 526 77 HOH HOH . C 3 HOH A 78 527 78 HOH HOH . C 3 HOH A 79 528 79 HOH HOH . C 3 HOH A 80 529 80 HOH HOH . C 3 HOH A 81 530 81 HOH HOH . C 3 HOH A 82 531 82 HOH HOH . C 3 HOH A 83 532 83 HOH HOH . C 3 HOH A 84 533 84 HOH HOH . C 3 HOH A 85 534 85 HOH HOH . C 3 HOH A 86 535 86 HOH HOH . C 3 HOH A 87 536 87 HOH HOH . C 3 HOH A 88 537 88 HOH HOH . C 3 HOH A 89 538 89 HOH HOH . C 3 HOH A 90 539 90 HOH HOH . C 3 HOH A 91 540 91 HOH HOH . C 3 HOH A 92 541 92 HOH HOH . C 3 HOH A 93 542 93 HOH HOH . C 3 HOH A 94 543 94 HOH HOH . C 3 HOH A 95 544 95 HOH HOH . C 3 HOH A 96 545 96 HOH HOH . C 3 HOH A 97 546 97 HOH HOH . C 3 HOH A 98 547 98 HOH HOH . C 3 HOH A 99 548 99 HOH HOH . C 3 HOH A 100 549 100 HOH HOH . C 3 HOH A 101 550 101 HOH HOH . C 3 HOH A 102 551 102 HOH HOH . C 3 HOH A 103 552 103 HOH HOH . C 3 HOH A 104 553 104 HOH HOH . C 3 HOH A 105 554 105 HOH HOH . C 3 HOH A 106 555 106 HOH HOH . C 3 HOH A 107 556 107 HOH HOH . C 3 HOH A 108 557 108 HOH HOH . C 3 HOH A 109 558 109 HOH HOH . C 3 HOH A 110 559 110 HOH HOH . C 3 HOH A 111 560 111 HOH HOH . C 3 HOH A 112 561 112 HOH HOH . C 3 HOH A 113 562 113 HOH HOH . C 3 HOH A 114 563 114 HOH HOH . C 3 HOH A 115 564 115 HOH HOH . C 3 HOH A 116 565 116 HOH HOH . C 3 HOH A 117 566 117 HOH HOH . C 3 HOH A 118 567 118 HOH HOH . C 3 HOH A 119 568 119 HOH HOH . C 3 HOH A 120 569 120 HOH HOH . C 3 HOH A 121 570 121 HOH HOH . C 3 HOH A 122 571 122 HOH HOH . C 3 HOH A 123 572 123 HOH HOH . C 3 HOH A 124 573 124 HOH HOH . C 3 HOH A 125 574 125 HOH HOH . C 3 HOH A 126 575 126 HOH HOH . C 3 HOH A 127 576 127 HOH HOH . C 3 HOH A 128 577 128 HOH HOH . C 3 HOH A 129 578 129 HOH HOH . C 3 HOH A 130 579 130 HOH HOH . C 3 HOH A 131 580 131 HOH HOH . C 3 HOH A 132 581 132 HOH HOH . C 3 HOH A 133 582 133 HOH HOH . C 3 HOH A 134 583 134 HOH HOH . C 3 HOH A 135 584 135 HOH HOH . C 3 HOH A 136 585 136 HOH HOH . C 3 HOH A 137 586 137 HOH HOH . C 3 HOH A 138 587 138 HOH HOH . C 3 HOH A 139 588 139 HOH HOH . C 3 HOH A 140 589 140 HOH HOH . C 3 HOH A 141 590 141 HOH HOH . C 3 HOH A 142 591 142 HOH HOH . C 3 HOH A 143 592 143 HOH HOH . C 3 HOH A 144 593 144 HOH HOH . C 3 HOH A 145 594 145 HOH HOH . C 3 HOH A 146 595 146 HOH HOH . C 3 HOH A 147 596 147 HOH HOH . C 3 HOH A 148 597 148 HOH HOH . C 3 HOH A 149 598 149 HOH HOH . C 3 HOH A 150 599 150 HOH HOH . C 3 HOH A 151 600 151 HOH HOH . C 3 HOH A 152 601 152 HOH HOH . C 3 HOH A 153 602 153 HOH HOH . C 3 HOH A 154 603 154 HOH HOH . C 3 HOH A 155 604 155 HOH HOH . C 3 HOH A 156 605 156 HOH HOH . C 3 HOH A 157 606 157 HOH HOH . C 3 HOH A 158 607 158 HOH HOH . C 3 HOH A 159 608 159 HOH HOH . C 3 HOH A 160 609 160 HOH HOH . C 3 HOH A 161 610 161 HOH HOH . C 3 HOH A 162 611 162 HOH HOH . C 3 HOH A 163 612 163 HOH HOH . C 3 HOH A 164 613 164 HOH HOH . C 3 HOH A 165 614 165 HOH HOH . C 3 HOH A 166 615 166 HOH HOH . C 3 HOH A 167 616 167 HOH HOH . C 3 HOH A 168 617 168 HOH HOH . C 3 HOH A 169 618 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 F1J . . . B 2 18.836 29.852 25.364 1 32.81 ? C15 F1J 449 A 1 HETATM 2 C C12 F1J . . . B 2 21.732 35.182 28.597 1 32.82 ? C12 F1J 449 A 1 HETATM 3 C C13 F1J . . . B 2 21.88 33.818 28.852 1 32.69 ? C13 F1J 449 A 1 HETATM 4 C C11 F1J . . . B 2 20.467 35.769 28.653 1 33.11 ? C11 F1J 449 A 1 HETATM 5 C C10 F1J . . . B 2 19.347 34.999 28.965 1 33.41 ? C10 F1J 449 A 1 HETATM 6 C C9 F1J . . . B 2 19.498 33.638 29.224 1 33.81 ? C9 F1J 449 A 1 HETATM 7 C C8 F1J . . . B 2 20.762 33.044 29.165 1 33.19 ? C8 F1J 449 A 1 HETATM 8 C C7 F1J . . . B 2 20.932 31.564 29.441 1 32.79 ? C7 F1J 449 A 1 HETATM 9 C C4 F1J . . . B 2 20.086 30.596 27.392 1 31.97 ? C4 F1J 449 A 1 HETATM 10 C C5 F1J . . . B 2 18.783 29.994 26.858 1 31.99 ? C5 F1J 449 A 1 HETATM 11 C C2 F1J . . . B 2 19.759 29.489 29.505 1 31.57 ? C2 F1J 449 A 1 HETATM 12 C C1 F1J . . . B 2 18.475 28.868 28.96 1 31.55 ? C1 F1J 449 A 1 HETATM 13 O O17 F1J . . . B 2 19.053 28.763 24.855 1 33.77 ? O17 F1J 449 A 1 HETATM 14 N N16 F1J . . . B 2 18.631 30.961 24.652 1 33.51 ? N16 F1J 449 A 1 HETATM 15 C C18 F1J . . . B 2 18.699 30.986 23.201 1 33.73 ? C18 F1J 449 A 1 HETATM 16 C C19 F1J . . . B 2 20.114 31.248 22.696 1 34.27 ? C19 F1J 449 A 1 HETATM 17 S S20 F1J . . . B 2 20.425 33.032 22.689 1 35.43 ? S20 F1J 449 A 1 HETATM 18 N N6 F1J . . . B 2 18.504 28.725 27.514 1 31.68 ? N6 F1J 449 A 1 HETATM 19 N N3 F1J . . . B 2 19.864 30.778 28.828 1 32.45 ? N3 F1J 449 A 1 HETATM 20 F F14 F1J . . . B 2 20.322 37.083 28.41 1 33.3 ? F14 F1J 449 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #