data_2ZJK # _model_server_result.job_id Kfn7hJrYfsnQQoZzCcrFCg _model_server_result.datetime_utc '2024-10-19 16:42:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":449}' # _entry.id 2ZJK # _exptl.entry_id 2ZJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.418 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-4-(4-fluorobenzyl)-N-(3-sulfanylpropyl)piperazine-2-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.34 _cell.angle_gamma 90 _cell.entry_id 2ZJK _cell.length_a 233.149 _cell.length_b 108.546 _cell.length_c 64.091 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 175 A CYS 155 1_555 A SG CYS 379 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 237 A CYS 217 1_555 A SG CYS 402 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 289 A CYS 269 1_555 A SG CYS 339 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 175 B CYS 155 1_555 B SG CYS 379 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 237 B CYS 217 1_555 B SG CYS 402 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 289 B CYS 269 1_555 B SG CYS 339 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 175 C CYS 155 1_555 C SG CYS 379 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 C SG CYS 237 C CYS 217 1_555 C SG CYS 402 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 C SG CYS 289 C CYS 269 1_555 C SG CYS 339 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C15 H22 F N3 O S' _chem_comp.formula_weight 311.418 _chem_comp.id F1K _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-4-(4-fluorobenzyl)-N-(3-sulfanylpropyl)piperazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(4-fluoro-benzyl)-piperazine-2-carboxylic acid(3-mercapto-propyl)-amide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 F1K doub 83 n y C24 C19 F1K sing 84 n y C23 C22 F1K sing 85 n y C22 F25 F1K sing 86 n n C22 C21 F1K doub 87 n y C20 C21 F1K sing 88 n y C20 C19 F1K doub 89 n y C12 C11 F1K sing 90 n n C12 S13 F1K sing 91 n n C11 C10 F1K sing 92 n n C10 N8 F1K sing 93 n n C7 C5 F1K sing 94 n n C7 O9 F1K doub 95 n n C7 N8 F1K sing 96 n n C4 C5 F1K sing 97 n n C4 N3 F1K sing 98 n n C5 N6 F1K sing 99 n n C2 C1 F1K sing 100 n n C2 N3 F1K sing 101 n n C1 N6 F1K sing 102 n n C19 C18 F1K sing 103 n n C18 N3 F1K sing 104 n n C24 H24 F1K sing 105 n n C23 H23 F1K sing 106 n n C20 H20 F1K sing 107 n n C12 H12 F1K sing 108 n n C12 H12A F1K sing 109 n n C11 H11 F1K sing 110 n n C11 H11A F1K sing 111 n n C10 H10 F1K sing 112 n n C10 H10A F1K sing 113 n n C4 H4 F1K sing 114 n n C4 H4A F1K sing 115 n n C5 H5 F1K sing 116 n n C2 H2 F1K sing 117 n n C2 H2A F1K sing 118 n n C1 H1 F1K sing 119 n n C1 H1A F1K sing 120 n n C21 H21 F1K sing 121 n n C18 H18 F1K sing 122 n n C18 H18A F1K sing 123 n n N6 HN6 F1K sing 124 n n N8 HN8 F1K sing 125 n n S13 HS13 F1K sing 126 n n # _atom_sites.entry_id 2ZJK _atom_sites.fract_transf_matrix[1][1] 0.004289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 F1K A 1 449 1 F1K FRG . E 2 F1K B 1 449 1 F1K FRG . F 2 F1K C 1 449 1 F1K FRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 F1K . . . E 2 -0.386 12.781 56.265 1 77.52 ? C24 F1K 449 B 1 HETATM 2 C C23 F1K . . . E 2 -0.1 13.661 55.221 1 76.25 ? C23 F1K 449 B 1 HETATM 3 C C22 F1K . . . E 2 -1.123 14.081 54.375 1 75.9 ? C22 F1K 449 B 1 HETATM 4 C C20 F1K . . . E 2 -2.713 12.741 55.61 1 77.51 ? C20 F1K 449 B 1 HETATM 5 C C12 F1K . . . E 2 -0.837 5.071 51.205 1 81.22 ? C12 F1K 449 B 1 HETATM 6 C C11 F1K . . . E 2 -1.207 5.345 52.66 1 79.97 ? C11 F1K 449 B 1 HETATM 7 C C10 F1K . . . E 2 0.012 5.743 53.489 1 78.51 ? C10 F1K 449 B 1 HETATM 8 C C7 F1K . . . E 2 -0.708 7.762 54.653 1 76.96 ? C7 F1K 449 B 1 HETATM 9 C C4 F1K . . . E 2 -1.154 9.442 56.434 1 75.63 ? C4 F1K 449 B 1 HETATM 10 C C5 F1K . . . E 2 -1.716 8.256 55.66 1 76.26 ? C5 F1K 449 B 1 HETATM 11 C C2 F1K . . . E 2 -2.873 9.182 58.107 1 75.24 ? C2 F1K 449 B 1 HETATM 12 C C1 F1K . . . E 2 -3.229 7.838 57.457 1 75.62 ? C1 F1K 449 B 1 HETATM 13 F F25 F1K . . . E 2 -0.851 14.922 53.364 1 76.03 ? F25 F1K 449 B 1 HETATM 14 C C21 F1K . . . E 2 -2.428 13.624 54.568 1 76.67 ? C21 F1K 449 B 1 HETATM 15 C C19 F1K . . . E 2 -1.692 12.321 56.464 1 77.07 ? C19 F1K 449 B 1 HETATM 16 C C18 F1K . . . E 2 -1.993 11.361 57.598 1 76.05 ? C18 F1K 449 B 1 HETATM 17 N N3 F1K . . . E 2 -2.326 10.045 57.061 1 75.42 ? N3 F1K 449 B 1 HETATM 18 N N6 F1K . . . E 2 -2.163 7.275 56.636 1 76.15 ? N6 F1K 449 B 1 HETATM 19 O O9 F1K . . . E 2 -0.248 8.537 53.828 1 77.65 ? O9 F1K 449 B 1 HETATM 20 N N8 F1K . . . E 2 -0.355 6.478 54.689 1 77.66 ? N8 F1K 449 B 1 HETATM 21 S S13 F1K . . . E 2 -0.789 6.621 50.264 1 82.12 ? S13 F1K 449 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #