data_2ZJW # _model_server_result.job_id GVIqXa-IyqbIn4SVeFKAaw _model_server_result.datetime_utc '2024-10-12 21:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zjw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":336}' # _entry.id 2ZJW # _exptl.entry_id 2ZJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.193 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3,7,8-tetrahydroxychromeno[5,4,3-cde]chromene-5,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZJW _cell.length_a 47.953 _cell.length_b 75.883 _cell.length_c 78.421 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H6 O8' _chem_comp.formula_weight 302.193 _chem_comp.id REF _chem_comp.mon_nstd_flag . _chem_comp.name 2,3,7,8-tetrahydroxychromeno[5,4,3-cde]chromene-5,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "Ellagic acid, 4,4',5,5',6,6'-Hexahydroxydiphenic acid 2,6,2',6'-dilactone" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REF doub 277 n y C1 C6 REF sing 278 n n C1 C14 REF sing 279 n y C2 C3 REF sing 280 n y C2 C11 REF sing 281 n y C3 C4 REF doub 282 n y C3 C7 REF sing 283 n y C4 O5 REF sing 284 n n C4 C10 REF sing 285 n y O5 C6 REF sing 286 n n C6 O24 REF doub 287 n n C7 C8 REF doub 288 n y C7 C13 REF sing 289 n n C8 C9 REF sing 290 n y C9 C10 REF doub 291 n y C9 O20 REF sing 292 n n C10 O19 REF sing 293 n n C11 O12 REF sing 294 n n C11 C16 REF doub 295 n y O12 C13 REF sing 296 n n C13 O21 REF doub 297 n n C14 C15 REF doub 298 n y C15 C16 REF sing 299 n y C15 O23 REF sing 300 n n C16 O22 REF sing 301 n n C8 H8 REF sing 302 n n C14 H14 REF sing 303 n n O19 HO19 REF sing 304 n n O20 HO20 REF sing 305 n n O22 HO22 REF sing 306 n n O23 HO23 REF sing 307 n n # _atom_sites.entry_id 2ZJW _atom_sites.fract_transf_matrix[1][1] 0.020854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 REF A 1 336 336 REF REF . C 3 HOH A 1 337 337 HOH HOH . C 3 HOH A 2 338 338 HOH HOH . C 3 HOH A 3 339 339 HOH HOH . C 3 HOH A 4 340 340 HOH HOH . C 3 HOH A 5 341 341 HOH HOH . C 3 HOH A 6 342 342 HOH HOH . C 3 HOH A 7 343 343 HOH HOH . C 3 HOH A 8 344 344 HOH HOH . C 3 HOH A 9 345 345 HOH HOH . C 3 HOH A 10 346 346 HOH HOH . C 3 HOH A 11 347 347 HOH HOH . C 3 HOH A 12 348 348 HOH HOH . C 3 HOH A 13 349 349 HOH HOH . C 3 HOH A 14 350 350 HOH HOH . C 3 HOH A 15 351 351 HOH HOH . C 3 HOH A 16 352 352 HOH HOH . C 3 HOH A 17 353 353 HOH HOH . C 3 HOH A 18 354 354 HOH HOH . C 3 HOH A 19 355 355 HOH HOH . C 3 HOH A 20 356 356 HOH HOH . C 3 HOH A 21 357 357 HOH HOH . C 3 HOH A 22 358 359 HOH HOH . C 3 HOH A 23 359 360 HOH HOH . C 3 HOH A 24 360 361 HOH HOH . C 3 HOH A 25 361 362 HOH HOH . C 3 HOH A 26 362 363 HOH HOH . C 3 HOH A 27 363 364 HOH HOH . C 3 HOH A 28 364 365 HOH HOH . C 3 HOH A 29 365 366 HOH HOH . C 3 HOH A 30 366 367 HOH HOH . C 3 HOH A 31 367 368 HOH HOH . C 3 HOH A 32 368 369 HOH HOH . C 3 HOH A 33 369 370 HOH HOH . C 3 HOH A 34 370 371 HOH HOH . C 3 HOH A 35 371 372 HOH HOH . C 3 HOH A 36 372 373 HOH HOH . C 3 HOH A 37 373 374 HOH HOH . C 3 HOH A 38 374 375 HOH HOH . C 3 HOH A 39 375 376 HOH HOH . C 3 HOH A 40 376 377 HOH HOH . C 3 HOH A 41 377 378 HOH HOH . C 3 HOH A 42 378 379 HOH HOH . C 3 HOH A 43 379 380 HOH HOH . C 3 HOH A 44 380 381 HOH HOH . C 3 HOH A 45 381 382 HOH HOH . C 3 HOH A 46 382 383 HOH HOH . C 3 HOH A 47 383 384 HOH HOH . C 3 HOH A 48 384 385 HOH HOH . C 3 HOH A 49 385 386 HOH HOH . C 3 HOH A 50 386 387 HOH HOH . C 3 HOH A 51 387 388 HOH HOH . C 3 HOH A 52 388 389 HOH HOH . C 3 HOH A 53 389 390 HOH HOH . C 3 HOH A 54 390 391 HOH HOH . C 3 HOH A 55 391 393 HOH HOH . C 3 HOH A 56 392 394 HOH HOH . C 3 HOH A 57 393 395 HOH HOH . C 3 HOH A 58 394 396 HOH HOH . C 3 HOH A 59 395 397 HOH HOH . C 3 HOH A 60 396 398 HOH HOH . C 3 HOH A 61 397 399 HOH HOH . C 3 HOH A 62 398 400 HOH HOH . C 3 HOH A 63 399 401 HOH HOH . C 3 HOH A 64 400 402 HOH HOH . C 3 HOH A 65 401 403 HOH HOH . C 3 HOH A 66 402 404 HOH HOH . C 3 HOH A 67 403 405 HOH HOH . C 3 HOH A 68 404 406 HOH HOH . C 3 HOH A 69 405 407 HOH HOH . C 3 HOH A 70 406 408 HOH HOH . C 3 HOH A 71 407 409 HOH HOH . C 3 HOH A 72 408 410 HOH HOH . C 3 HOH A 73 409 411 HOH HOH . C 3 HOH A 74 410 412 HOH HOH . C 3 HOH A 75 411 413 HOH HOH . C 3 HOH A 76 412 414 HOH HOH . C 3 HOH A 77 413 415 HOH HOH . C 3 HOH A 78 414 416 HOH HOH . C 3 HOH A 79 415 417 HOH HOH . C 3 HOH A 80 416 418 HOH HOH . C 3 HOH A 81 417 419 HOH HOH . C 3 HOH A 82 418 420 HOH HOH . C 3 HOH A 83 419 421 HOH HOH . C 3 HOH A 84 420 422 HOH HOH . C 3 HOH A 85 421 423 HOH HOH . C 3 HOH A 86 422 424 HOH HOH . C 3 HOH A 87 423 425 HOH HOH . C 3 HOH A 88 424 426 HOH HOH . C 3 HOH A 89 425 427 HOH HOH . C 3 HOH A 90 426 428 HOH HOH . C 3 HOH A 91 427 429 HOH HOH . C 3 HOH A 92 428 430 HOH HOH . C 3 HOH A 93 429 431 HOH HOH . C 3 HOH A 94 430 432 HOH HOH . C 3 HOH A 95 431 433 HOH HOH . C 3 HOH A 96 432 434 HOH HOH . C 3 HOH A 97 433 435 HOH HOH . C 3 HOH A 98 434 436 HOH HOH . C 3 HOH A 99 435 437 HOH HOH . C 3 HOH A 100 436 438 HOH HOH . C 3 HOH A 101 437 439 HOH HOH . C 3 HOH A 102 438 440 HOH HOH . C 3 HOH A 103 439 441 HOH HOH . C 3 HOH A 104 440 442 HOH HOH . C 3 HOH A 105 441 443 HOH HOH . C 3 HOH A 106 442 444 HOH HOH . C 3 HOH A 107 443 445 HOH HOH . C 3 HOH A 108 444 446 HOH HOH . C 3 HOH A 109 445 447 HOH HOH . C 3 HOH A 110 446 448 HOH HOH . C 3 HOH A 111 447 449 HOH HOH . C 3 HOH A 112 448 450 HOH HOH . C 3 HOH A 113 449 451 HOH HOH . C 3 HOH A 114 450 452 HOH HOH . C 3 HOH A 115 451 454 HOH HOH . C 3 HOH A 116 452 455 HOH HOH . C 3 HOH A 117 453 456 HOH HOH . C 3 HOH A 118 454 457 HOH HOH . C 3 HOH A 119 455 458 HOH HOH . C 3 HOH A 120 456 459 HOH HOH . C 3 HOH A 121 457 460 HOH HOH . C 3 HOH A 122 458 461 HOH HOH . C 3 HOH A 123 459 462 HOH HOH . C 3 HOH A 124 460 463 HOH HOH . C 3 HOH A 125 461 464 HOH HOH . C 3 HOH A 126 462 465 HOH HOH . C 3 HOH A 127 463 466 HOH HOH . C 3 HOH A 128 464 467 HOH HOH . C 3 HOH A 129 465 468 HOH HOH . C 3 HOH A 130 466 469 HOH HOH . C 3 HOH A 131 467 470 HOH HOH . C 3 HOH A 132 468 471 HOH HOH . C 3 HOH A 133 469 472 HOH HOH . C 3 HOH A 134 470 473 HOH HOH . C 3 HOH A 135 471 474 HOH HOH . C 3 HOH A 136 472 475 HOH HOH . C 3 HOH A 137 473 476 HOH HOH . C 3 HOH A 138 474 477 HOH HOH . C 3 HOH A 139 475 478 HOH HOH . C 3 HOH A 140 476 479 HOH HOH . C 3 HOH A 141 477 480 HOH HOH . C 3 HOH A 142 478 481 HOH HOH . C 3 HOH A 143 479 482 HOH HOH . C 3 HOH A 144 480 483 HOH HOH . C 3 HOH A 145 481 485 HOH HOH . C 3 HOH A 146 482 486 HOH HOH . C 3 HOH A 147 483 487 HOH HOH . C 3 HOH A 148 484 488 HOH HOH . C 3 HOH A 149 485 489 HOH HOH . C 3 HOH A 150 486 490 HOH HOH . C 3 HOH A 151 487 491 HOH HOH . C 3 HOH A 152 488 492 HOH HOH . C 3 HOH A 153 489 493 HOH HOH . C 3 HOH A 154 490 494 HOH HOH . C 3 HOH A 155 491 495 HOH HOH . C 3 HOH A 156 492 497 HOH HOH . C 3 HOH A 157 493 498 HOH HOH . C 3 HOH A 158 494 499 HOH HOH . C 3 HOH A 159 495 500 HOH HOH . C 3 HOH A 160 496 501 HOH HOH . C 3 HOH A 161 497 502 HOH HOH . C 3 HOH A 162 498 503 HOH HOH . C 3 HOH A 163 499 504 HOH HOH . C 3 HOH A 164 500 505 HOH HOH . C 3 HOH A 165 501 506 HOH HOH . C 3 HOH A 166 502 507 HOH HOH . C 3 HOH A 167 503 508 HOH HOH . C 3 HOH A 168 504 509 HOH HOH . C 3 HOH A 169 505 510 HOH HOH . C 3 HOH A 170 506 511 HOH HOH . C 3 HOH A 171 507 512 HOH HOH . C 3 HOH A 172 508 513 HOH HOH . C 3 HOH A 173 509 514 HOH HOH . C 3 HOH A 174 510 515 HOH HOH . C 3 HOH A 175 511 516 HOH HOH . C 3 HOH A 176 512 517 HOH HOH . C 3 HOH A 177 513 518 HOH HOH . C 3 HOH A 178 514 519 HOH HOH . C 3 HOH A 179 515 520 HOH HOH . C 3 HOH A 180 516 521 HOH HOH . C 3 HOH A 181 517 522 HOH HOH . C 3 HOH A 182 518 523 HOH HOH . C 3 HOH A 183 519 524 HOH HOH . C 3 HOH A 184 520 525 HOH HOH . C 3 HOH A 185 521 526 HOH HOH . C 3 HOH A 186 522 527 HOH HOH . C 3 HOH A 187 523 528 HOH HOH . C 3 HOH A 188 524 529 HOH HOH . C 3 HOH A 189 525 530 HOH HOH . C 3 HOH A 190 526 531 HOH HOH . C 3 HOH A 191 527 532 HOH HOH . C 3 HOH A 192 528 533 HOH HOH . C 3 HOH A 193 529 534 HOH HOH . C 3 HOH A 194 530 535 HOH HOH . C 3 HOH A 195 531 536 HOH HOH . C 3 HOH A 196 532 537 HOH HOH . C 3 HOH A 197 533 538 HOH HOH . C 3 HOH A 198 534 539 HOH HOH . C 3 HOH A 199 535 540 HOH HOH . C 3 HOH A 200 536 541 HOH HOH . C 3 HOH A 201 537 542 HOH HOH . C 3 HOH A 202 538 543 HOH HOH . C 3 HOH A 203 539 544 HOH HOH . C 3 HOH A 204 540 545 HOH HOH . C 3 HOH A 205 541 546 HOH HOH . C 3 HOH A 206 542 547 HOH HOH . C 3 HOH A 207 543 548 HOH HOH . C 3 HOH A 208 544 549 HOH HOH . C 3 HOH A 209 545 551 HOH HOH . C 3 HOH A 210 546 552 HOH HOH . C 3 HOH A 211 547 553 HOH HOH . C 3 HOH A 212 548 554 HOH HOH . C 3 HOH A 213 549 555 HOH HOH . C 3 HOH A 214 550 556 HOH HOH . C 3 HOH A 215 551 557 HOH HOH . C 3 HOH A 216 552 558 HOH HOH . C 3 HOH A 217 553 559 HOH HOH . C 3 HOH A 218 554 560 HOH HOH . C 3 HOH A 219 555 561 HOH HOH . C 3 HOH A 220 556 562 HOH HOH . C 3 HOH A 221 557 563 HOH HOH . C 3 HOH A 222 558 564 HOH HOH . C 3 HOH A 223 559 565 HOH HOH . C 3 HOH A 224 560 566 HOH HOH . C 3 HOH A 225 561 567 HOH HOH . C 3 HOH A 226 562 568 HOH HOH . C 3 HOH A 227 563 569 HOH HOH . C 3 HOH A 228 564 570 HOH HOH . C 3 HOH A 229 565 571 HOH HOH . C 3 HOH A 230 566 572 HOH HOH . C 3 HOH A 231 567 574 HOH HOH . C 3 HOH A 232 568 575 HOH HOH . C 3 HOH A 233 569 576 HOH HOH . C 3 HOH A 234 570 577 HOH HOH . C 3 HOH A 235 571 578 HOH HOH . C 3 HOH A 236 572 580 HOH HOH . C 3 HOH A 237 573 582 HOH HOH . C 3 HOH A 238 574 583 HOH HOH . C 3 HOH A 239 575 584 HOH HOH . C 3 HOH A 240 576 585 HOH HOH . C 3 HOH A 241 577 586 HOH HOH . C 3 HOH A 242 578 587 HOH HOH . C 3 HOH A 243 579 588 HOH HOH . C 3 HOH A 244 580 589 HOH HOH . C 3 HOH A 245 581 591 HOH HOH . C 3 HOH A 246 582 592 HOH HOH . C 3 HOH A 247 583 593 HOH HOH . C 3 HOH A 248 584 594 HOH HOH . C 3 HOH A 249 585 595 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REF . . . B 2 36.299 -4.121 11.346 1 40.25 ? C1 REF 336 A 1 HETATM 2 C C2 REF . . . B 2 36.762 -3.998 10.051 1 42.01 ? C2 REF 336 A 1 HETATM 3 C C3 REF . . . B 2 37.036 -5.156 9.373 1 42.86 ? C3 REF 336 A 1 HETATM 4 C C4 REF . . . B 2 36.854 -6.391 9.987 1 44.06 ? C4 REF 336 A 1 HETATM 5 O O5 REF . . . B 2 36.408 -6.478 11.213 1 42.75 ? O5 REF 336 A 1 HETATM 6 C C6 REF . . . B 2 36.127 -5.396 11.893 1 40.68 ? C6 REF 336 A 1 HETATM 7 C C7 REF . . . B 2 37.495 -5.03 8.077 1 44.81 ? C7 REF 336 A 1 HETATM 8 C C8 REF . . . B 2 37.802 -6.167 7.341 1 48.22 ? C8 REF 336 A 1 HETATM 9 C C9 REF . . . B 2 37.638 -7.409 7.936 1 47.91 ? C9 REF 336 A 1 HETATM 10 C C10 REF . . . B 2 37.173 -7.517 9.234 1 45.96 ? C10 REF 336 A 1 HETATM 11 C C11 REF . . . B 2 36.957 -2.765 9.429 1 44.41 ? C11 REF 336 A 1 HETATM 12 O O12 REF . . . B 2 37.384 -2.676 8.203 1 45.9 ? O12 REF 336 A 1 HETATM 13 C C13 REF . . . B 2 37.65 -3.759 7.528 1 45.69 ? C13 REF 336 A 1 HETATM 14 C C14 REF . . . B 2 36.02 -2.965 12.064 1 40.57 ? C14 REF 336 A 1 HETATM 15 C C15 REF . . . B 2 36.226 -1.726 11.463 1 38.72 ? C15 REF 336 A 1 HETATM 16 C C16 REF . . . B 2 36.69 -1.618 10.156 1 42.18 ? C16 REF 336 A 1 HETATM 17 O O19 REF . . . B 2 37.057 -8.75 9.708 1 46.27 ? O19 REF 336 A 1 HETATM 18 O O20 REF . . . B 2 37.939 -8.572 7.254 1 53.09 ? O20 REF 336 A 1 HETATM 19 O O21 REF . . . B 2 38.094 -3.672 6.271 1 49.68 ? O21 REF 336 A 1 HETATM 20 O O22 REF . . . B 2 36.897 -0.367 9.596 1 37.99 ? O22 REF 336 A 1 HETATM 21 O O23 REF . . . B 2 35.981 -0.586 12.165 1 43.14 ? O23 REF 336 A 1 HETATM 22 O O24 REF . . . B 2 35.654 -5.501 13.16 1 40.85 ? O24 REF 336 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 22 #