data_2ZK1
#
_model_server_result.job_id            fn2DTWg3gEknYdVql6Nv-A 
_model_server_result.datetime_utc      '2024-11-23 00:35:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    2ZK1 
#
_exptl.entry_id    2ZK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              316.435 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.02 
_cell.angle_gamma         90 
_cell.entry_id            2ZK1 
_cell.length_a            93.498 
_cell.length_b            60.81 
_cell.length_c            118.203 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.749 30.405 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C8 PTG . A PTG 1 1_555 A SG CYS 95 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
covale ? covale2 D C8 PTG . B PTG 2 1_555 B SG CYS 95 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? 
#
_chem_comp.formula           'C20 H28 O3' 
_chem_comp.formula_weight    316.435 
_chem_comp.id                PTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '15-deoxy-delta(12,14)-prostaglandin J2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PTG sing 277 n n 
C1 H1 PTG sing 278 n n 
C1 H1A PTG sing 279 n n 
C1 H1B PTG sing 280 n n 
C2 C3 PTG sing 281 n n 
C2 H2 PTG sing 282 n n 
C2 H2A PTG sing 283 n n 
C3 C4 PTG sing 284 n n 
C3 H3 PTG sing 285 n n 
C3 H3A PTG sing 286 n n 
C4 C5 PTG sing 287 n n 
C4 H4 PTG sing 288 n n 
C4 H4A PTG sing 289 n n 
C5 C6 PTG sing 290 n n 
C5 H5 PTG sing 291 n n 
C5 H5A PTG sing 292 n n 
C6 C7 PTG doub 293 e n 
C6 H6 PTG sing 294 n n 
C7 C8 PTG sing 295 n n 
C7 H7 PTG sing 296 n n 
C8 C10 PTG doub 297 z n 
C8 H8 PTG sing 298 n n 
C10 C11 PTG sing 299 n n 
C10 C15 PTG sing 300 n n 
C11 O12 PTG doub 301 n n 
C13 C14 PTG doub 302 n n 
C13 H13 PTG sing 303 n n 
C14 C15 PTG sing 304 n n 
C14 H14 PTG sing 305 n n 
C15 C16 PTG sing 306 n n 
C15 H15 PTG sing 307 n n 
C16 C17 PTG sing 308 n n 
C16 H16 PTG sing 309 n n 
C16 H16A PTG sing 310 n n 
C17 C18 PTG doub 311 n n 
C17 H17 PTG sing 312 e n 
C18 C19 PTG sing 313 n n 
C18 H18 PTG sing 314 n n 
C19 C20 PTG sing 315 n n 
C19 H19 PTG sing 316 n n 
C19 H19A PTG sing 317 n n 
C20 C21 PTG sing 318 n n 
C20 H20 PTG sing 319 n n 
C20 H20A PTG sing 320 n n 
C21 C22 PTG sing 321 n n 
C21 H21 PTG sing 322 n n 
C21 H21A PTG sing 323 n n 
C22 O23 PTG doub 324 n n 
C22 O24 PTG sing 325 n n 
C13 C11 PTG sing 326 n n 
O24 H28 PTG sing 327 n n 
#
_atom_sites.entry_id                     2ZK1 
_atom_sites.fract_transf_matrix[1][1]    0.010695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002473 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008683 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PTG A 1 1 1 PTG PTG . 
D 2 PTG B 1 2 2 PTG PTG . 
E 3 HOH A 1 1004 1004 HOH HOH . 
E 3 HOH A 2 1005 1005 HOH HOH . 
E 3 HOH A 3 1006 1006 HOH HOH . 
E 3 HOH A 4 1007 1007 HOH HOH . 
E 3 HOH A 5 1015 1015 HOH HOH . 
E 3 HOH A 6 1016 1016 HOH HOH . 
E 3 HOH A 7 1017 1017 HOH HOH . 
E 3 HOH A 8 1018 1018 HOH HOH . 
E 3 HOH A 9 1019 1019 HOH HOH . 
E 3 HOH A 10 1021 1021 HOH HOH . 
E 3 HOH A 11 1023 1023 HOH HOH . 
E 3 HOH A 12 1025 1025 HOH HOH . 
E 3 HOH A 13 1027 1027 HOH HOH . 
E 3 HOH A 14 1028 1028 HOH HOH . 
E 3 HOH A 15 1030 1030 HOH HOH . 
E 3 HOH A 16 1031 1031 HOH HOH . 
E 3 HOH A 17 1032 1032 HOH HOH . 
E 3 HOH A 18 1036 1036 HOH HOH . 
E 3 HOH A 19 1038 1038 HOH HOH . 
E 3 HOH A 20 1039 1039 HOH HOH . 
E 3 HOH A 21 1041 1041 HOH HOH . 
E 3 HOH A 22 1043 1043 HOH HOH . 
E 3 HOH A 23 1045 1045 HOH HOH . 
E 3 HOH A 24 1048 1048 HOH HOH . 
E 3 HOH A 25 1049 1049 HOH HOH . 
E 3 HOH A 26 1050 1050 HOH HOH . 
E 3 HOH A 27 1051 1051 HOH HOH . 
E 3 HOH A 28 1053 1053 HOH HOH . 
E 3 HOH A 29 1054 1054 HOH HOH . 
E 3 HOH A 30 1055 1055 HOH HOH . 
E 3 HOH A 31 1057 1057 HOH HOH . 
E 3 HOH A 32 1060 1060 HOH HOH . 
E 3 HOH A 33 1061 1061 HOH HOH . 
E 3 HOH A 34 1062 1062 HOH HOH . 
E 3 HOH A 35 1063 1063 HOH HOH . 
F 3 HOH B 1 1001 1001 HOH HOH . 
F 3 HOH B 2 1002 1002 HOH HOH . 
F 3 HOH B 3 1003 1003 HOH HOH . 
F 3 HOH B 4 1009 1009 HOH HOH . 
F 3 HOH B 5 1010 1010 HOH HOH . 
F 3 HOH B 6 1011 1011 HOH HOH . 
F 3 HOH B 7 1012 1012 HOH HOH . 
F 3 HOH B 8 1013 1013 HOH HOH . 
F 3 HOH B 9 1014 1014 HOH HOH . 
F 3 HOH B 10 1020 1020 HOH HOH . 
F 3 HOH B 11 1022 1022 HOH HOH . 
F 3 HOH B 12 1024 1024 HOH HOH . 
F 3 HOH B 13 1026 1026 HOH HOH . 
F 3 HOH B 14 1029 1029 HOH HOH . 
F 3 HOH B 15 1033 1033 HOH HOH . 
F 3 HOH B 16 1034 1034 HOH HOH . 
F 3 HOH B 17 1035 1035 HOH HOH . 
F 3 HOH B 18 1037 1037 HOH HOH . 
F 3 HOH B 19 1040 1040 HOH HOH . 
F 3 HOH B 20 1042 1042 HOH HOH . 
F 3 HOH B 21 1044 1044 HOH HOH . 
F 3 HOH B 22 1046 1046 HOH HOH . 
F 3 HOH B 23 1047 1047 HOH HOH . 
F 3 HOH B 24 1052 1052 HOH HOH . 
F 3 HOH B 25 1056 1056 HOH HOH . 
F 3 HOH B 26 1058 1058 HOH HOH . 
F 3 HOH B 27 1059 1059 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTG . . . D 2 39.527 43.314 28.905 1 76.89 ? C1 PTG 2 B 1 
HETATM 2 C C2 PTG . . . D 2 39.588 41.939 29.586 1 78.66 ? C2 PTG 2 B 1 
HETATM 3 C C3 PTG . . . D 2 39.139 42.063 31.034 1 79.01 ? C3 PTG 2 B 1 
HETATM 4 C C4 PTG . . . D 2 39.478 40.952 32.043 1 79.95 ? C4 PTG 2 B 1 
HETATM 5 C C5 PTG . . . D 2 38.639 40.774 33.322 1 80.79 ? C5 PTG 2 B 1 
HETATM 6 C C6 PTG . . . D 2 38.873 41.947 34.265 1 82.21 ? C6 PTG 2 B 1 
HETATM 7 C C7 PTG . . . D 2 38.523 41.943 35.571 1 82.97 ? C7 PTG 2 B 1 
HETATM 8 C C8 PTG . . . D 2 37.835 40.753 36.311 1 82.1 ? C8 PTG 2 B 1 
HETATM 9 C C10 PTG . . . D 2 36.305 40.733 35.955 1 83.97 ? C10 PTG 2 B 1 
HETATM 10 C C11 PTG . . . D 2 35.265 41.549 36.722 1 84.79 ? C11 PTG 2 B 1 
HETATM 11 O O12 PTG . . . D 2 35.467 42.396 37.595 1 86.72 ? O12 PTG 2 B 1 
HETATM 12 C C13 PTG . . . D 2 34.057 41.175 36.285 1 85.3 ? C13 PTG 2 B 1 
HETATM 13 C C14 PTG . . . D 2 34.122 39.893 35.826 1 84.66 ? C14 PTG 2 B 1 
HETATM 14 C C15 PTG . . . D 2 35.565 39.374 35.98 1 83.63 ? C15 PTG 2 B 1 
HETATM 15 C C16 PTG . . . D 2 35.715 38.558 37.303 1 82.95 ? C16 PTG 2 B 1 
HETATM 16 C C17 PTG . . . D 2 36.426 37.246 37.102 1 82.08 ? C17 PTG 2 B 1 
HETATM 17 C C18 PTG . . . D 2 35.906 36.03 37.256 1 81.43 ? C18 PTG 2 B 1 
HETATM 18 C C19 PTG . . . D 2 34.469 35.799 37.668 1 81.09 ? C19 PTG 2 B 1 
HETATM 19 C C20 PTG . . . D 2 34.143 34.367 38.163 1 80.97 ? C20 PTG 2 B 1 
HETATM 20 C C21 PTG . . . D 2 32.768 33.821 37.696 1 81.25 ? C21 PTG 2 B 1 
HETATM 21 C C22 PTG . . . D 2 32.75 32.269 37.653 1 81.87 ? C22 PTG 2 B 1 
HETATM 22 O O23 PTG . . . D 2 33.495 31.727 36.815 1 82.73 ? O23 PTG 2 B 1 
HETATM 23 O O24 PTG . . . D 2 31.976 31.659 38.442 1 82.51 ? O24 PTG 2 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#