data_2ZK2 # _model_server_result.job_id NQLejvpcJqtV7yRljC7mgQ _model_server_result.datetime_utc '2024-11-26 13:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":477}' # _entry.id 2ZK2 # _exptl.entry_id 2ZK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.02 _cell.angle_gamma 90 _cell.entry_id 2ZK2 _cell.length_a 93.381 _cell.length_b 61.347 _cell.length_c 118.687 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,D,E 2 1 B,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6905 30.6735 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG2 GSH . A GSH 1 1_555 D C14 PTG . A PTG 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale2 A SG CYS 95 A CYS 285 1_555 D C8 PTG . A PTG 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? # _chem_comp.formula 'C20 H28 O3' _chem_comp.formula_weight 316.435 _chem_comp.id PTG _chem_comp.mon_nstd_flag . _chem_comp.name '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '15-deoxy-delta(12,14)-prostaglandin J2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTG sing 313 n n C1 H1 PTG sing 314 n n C1 H1A PTG sing 315 n n C1 H1B PTG sing 316 n n C2 C3 PTG sing 317 n n C2 H2 PTG sing 318 n n C2 H2A PTG sing 319 n n C3 C4 PTG sing 320 n n C3 H3 PTG sing 321 n n C3 H3A PTG sing 322 n n C4 C5 PTG sing 323 n n C4 H4 PTG sing 324 n n C4 H4A PTG sing 325 n n C5 C6 PTG sing 326 n n C5 H5 PTG sing 327 n n C5 H5A PTG sing 328 n n C6 C7 PTG doub 329 e n C6 H6 PTG sing 330 n n C7 C8 PTG sing 331 n n C7 H7 PTG sing 332 n n C8 C10 PTG doub 333 z n C8 H8 PTG sing 334 n n C10 C11 PTG sing 335 n n C10 C15 PTG sing 336 n n C11 O12 PTG doub 337 n n C13 C14 PTG doub 338 n n C13 H13 PTG sing 339 n n C14 C15 PTG sing 340 n n C14 H14 PTG sing 341 n n C15 C16 PTG sing 342 n n C15 H15 PTG sing 343 n n C16 C17 PTG sing 344 n n C16 H16 PTG sing 345 n n C16 H16A PTG sing 346 n n C17 C18 PTG doub 347 n n C17 H17 PTG sing 348 e n C18 C19 PTG sing 349 n n C18 H18 PTG sing 350 n n C19 C20 PTG sing 351 n n C19 H19 PTG sing 352 n n C19 H19A PTG sing 353 n n C20 C21 PTG sing 354 n n C20 H20 PTG sing 355 n n C20 H20A PTG sing 356 n n C21 C22 PTG sing 357 n n C21 H21 PTG sing 358 n n C21 H21A PTG sing 359 n n C22 O23 PTG doub 360 n n C22 O24 PTG sing 361 n n C13 C11 PTG sing 362 n n O24 H28 PTG sing 363 n n # _atom_sites.entry_id 2ZK2 _atom_sites.fract_transf_matrix[1][1] 0.010709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002476 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 1 1 GSH GSH . D 3 PTG A 1 477 477 PTG PTG . E 4 HOH A 1 1003 1003 HOH HOH . E 4 HOH A 2 1005 1005 HOH HOH . E 4 HOH A 3 1006 1006 HOH HOH . E 4 HOH A 4 1009 1009 HOH HOH . E 4 HOH A 5 1010 1010 HOH HOH . E 4 HOH A 6 1011 1011 HOH HOH . E 4 HOH A 7 1013 1013 HOH HOH . E 4 HOH A 8 1015 1015 HOH HOH . E 4 HOH A 9 1017 1017 HOH HOH . E 4 HOH A 10 1018 1018 HOH HOH . E 4 HOH A 11 1019 1019 HOH HOH . E 4 HOH A 12 1020 1020 HOH HOH . E 4 HOH A 13 1022 1022 HOH HOH . E 4 HOH A 14 1024 1024 HOH HOH . E 4 HOH A 15 1025 1025 HOH HOH . E 4 HOH A 16 1027 1027 HOH HOH . E 4 HOH A 17 1028 1028 HOH HOH . E 4 HOH A 18 1029 1029 HOH HOH . E 4 HOH A 19 1032 1032 HOH HOH . E 4 HOH A 20 1033 1033 HOH HOH . E 4 HOH A 21 1036 1036 HOH HOH . E 4 HOH A 22 1038 1038 HOH HOH . E 4 HOH A 23 1040 1040 HOH HOH . E 4 HOH A 24 1042 1042 HOH HOH . E 4 HOH A 25 1046 1046 HOH HOH . E 4 HOH A 26 1048 1048 HOH HOH . E 4 HOH A 27 1049 1049 HOH HOH . E 4 HOH A 28 1051 1051 HOH HOH . E 4 HOH A 29 1053 1053 HOH HOH . E 4 HOH A 30 1054 1054 HOH HOH . E 4 HOH A 31 1056 1056 HOH HOH . E 4 HOH A 32 1057 1057 HOH HOH . E 4 HOH A 33 1058 1058 HOH HOH . E 4 HOH A 34 1060 1060 HOH HOH . E 4 HOH A 35 1061 1061 HOH HOH . E 4 HOH A 36 1062 1062 HOH HOH . E 4 HOH A 37 1063 1063 HOH HOH . E 4 HOH A 38 1064 1064 HOH HOH . E 4 HOH A 39 1066 1066 HOH HOH . E 4 HOH A 40 1067 1067 HOH HOH . E 4 HOH A 41 1069 1069 HOH HOH . E 4 HOH A 42 1070 1070 HOH HOH . E 4 HOH A 43 1071 1071 HOH HOH . E 4 HOH A 44 1072 1072 HOH HOH . E 4 HOH A 45 1074 1074 HOH HOH . E 4 HOH A 46 1075 1075 HOH HOH . E 4 HOH A 47 1076 1076 HOH HOH . E 4 HOH A 48 1078 1078 HOH HOH . E 4 HOH A 49 1079 1079 HOH HOH . E 4 HOH A 50 1080 1080 HOH HOH . E 4 HOH A 51 1081 1081 HOH HOH . E 4 HOH A 52 1084 1084 HOH HOH . E 4 HOH A 53 1086 1086 HOH HOH . E 4 HOH A 54 1087 1087 HOH HOH . F 4 HOH B 1 1001 1001 HOH HOH . F 4 HOH B 2 1002 1002 HOH HOH . F 4 HOH B 3 1004 1004 HOH HOH . F 4 HOH B 4 1007 1007 HOH HOH . F 4 HOH B 5 1008 1008 HOH HOH . F 4 HOH B 6 1012 1012 HOH HOH . F 4 HOH B 7 1016 1016 HOH HOH . F 4 HOH B 8 1021 1021 HOH HOH . F 4 HOH B 9 1023 1023 HOH HOH . F 4 HOH B 10 1026 1026 HOH HOH . F 4 HOH B 11 1030 1030 HOH HOH . F 4 HOH B 12 1031 1031 HOH HOH . F 4 HOH B 13 1034 1034 HOH HOH . F 4 HOH B 14 1037 1037 HOH HOH . F 4 HOH B 15 1039 1039 HOH HOH . F 4 HOH B 16 1041 1041 HOH HOH . F 4 HOH B 17 1043 1043 HOH HOH . F 4 HOH B 18 1045 1045 HOH HOH . F 4 HOH B 19 1047 1047 HOH HOH . F 4 HOH B 20 1050 1050 HOH HOH . F 4 HOH B 21 1052 1052 HOH HOH . F 4 HOH B 22 1055 1055 HOH HOH . F 4 HOH B 23 1059 1059 HOH HOH . F 4 HOH B 24 1065 1065 HOH HOH . F 4 HOH B 25 1068 1068 HOH HOH . F 4 HOH B 26 1073 1073 HOH HOH . F 4 HOH B 27 1077 1077 HOH HOH . F 4 HOH B 28 1082 1082 HOH HOH . F 4 HOH B 29 1083 1083 HOH HOH . F 4 HOH B 30 1085 1085 HOH HOH . F 4 HOH B 31 1088 1088 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTG . . . D 3 19.794 65.172 20.828 1 53.98 ? C1 PTG 477 A 1 HETATM 2 C C2 PTG . . . D 3 18.614 65.586 19.965 1 53.26 ? C2 PTG 477 A 1 HETATM 3 C C3 PTG . . . D 3 18.198 64.513 18.962 1 57.59 ? C3 PTG 477 A 1 HETATM 4 C C4 PTG . . . D 3 19.209 64.296 17.812 1 58.74 ? C4 PTG 477 A 1 HETATM 5 C C5 PTG . . . D 3 18.715 63.207 16.854 1 61.42 ? C5 PTG 477 A 1 HETATM 6 C C6 PTG . . . D 3 19.721 63.003 15.744 1 61.92 ? C6 PTG 477 A 1 HETATM 7 C C7 PTG . . . D 3 19.668 63.582 14.561 1 63.27 ? C7 PTG 477 A 1 HETATM 8 C C8 PTG . . . D 3 18.526 64.552 14.23 1 65 ? C8 PTG 477 A 1 HETATM 9 C C10 PTG . . . D 3 17.768 64.255 12.892 1 66.83 ? C10 PTG 477 A 1 HETATM 10 C C11 PTG . . . D 3 18.328 64.636 11.545 1 67.5 ? C11 PTG 477 A 1 HETATM 11 O O12 PTG . . . D 3 19.435 65.094 11.339 1 68.07 ? O12 PTG 477 A 1 HETATM 12 C C13 PTG . . . D 3 17.447 64.394 10.593 1 67.77 ? C13 PTG 477 A 1 HETATM 13 C C14 PTG . . . D 3 16.289 63.879 11.114 1 69.01 ? C14 PTG 477 A 1 HETATM 14 C C15 PTG . . . D 3 16.438 63.507 12.633 1 68.23 ? C15 PTG 477 A 1 HETATM 15 C C16 PTG . . . D 3 15.225 64.054 13.444 1 68.54 ? C16 PTG 477 A 1 HETATM 16 C C17 PTG . . . D 3 14.991 63.469 14.823 1 68.01 ? C17 PTG 477 A 1 HETATM 17 C C18 PTG . . . D 3 13.946 62.685 15.112 1 68 ? C18 PTG 477 A 1 HETATM 18 C C19 PTG . . . D 3 12.855 62.259 14.125 1 66.58 ? C19 PTG 477 A 1 HETATM 19 C C20 PTG . . . D 3 12.287 60.843 14.488 1 65.97 ? C20 PTG 477 A 1 HETATM 20 C C21 PTG . . . D 3 11.67 60.782 15.916 1 66.01 ? C21 PTG 477 A 1 HETATM 21 C C22 PTG . . . D 3 10.195 60.282 15.94 1 66.35 ? C22 PTG 477 A 1 HETATM 22 O O23 PTG . . . D 3 9.53 60.39 14.893 1 68.13 ? O23 PTG 477 A 1 HETATM 23 O O24 PTG . . . D 3 9.766 59.806 17.027 1 64.23 ? O24 PTG 477 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #