data_2ZK2
#
_model_server_result.job_id            3L-w4To50-pDyS6cLxKwYw 
_model_server_result.datetime_utc      '2024-11-01 21:40:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":477}' 
#
_entry.id    2ZK2 
#
_exptl.entry_id    2ZK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              316.435 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.02 
_cell.angle_gamma         90 
_cell.entry_id            2ZK2 
_cell.length_a            93.381 
_cell.length_b            61.347 
_cell.length_c            118.687 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,D,E 2 1 
B,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6905 30.6735 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG2 GSH . A GSH 1 1_555 D C14 PTG . A PTG 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? 
covale ? covale2 A SG CYS 95 A CYS 285 1_555 D C8 PTG . A PTG 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
#
_chem_comp.formula           'C20 H28 O3' 
_chem_comp.formula_weight    316.435 
_chem_comp.id                PTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '15-deoxy-delta(12,14)-prostaglandin J2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PTG sing 313 n n 
C1 H1 PTG sing 314 n n 
C1 H1A PTG sing 315 n n 
C1 H1B PTG sing 316 n n 
C2 C3 PTG sing 317 n n 
C2 H2 PTG sing 318 n n 
C2 H2A PTG sing 319 n n 
C3 C4 PTG sing 320 n n 
C3 H3 PTG sing 321 n n 
C3 H3A PTG sing 322 n n 
C4 C5 PTG sing 323 n n 
C4 H4 PTG sing 324 n n 
C4 H4A PTG sing 325 n n 
C5 C6 PTG sing 326 n n 
C5 H5 PTG sing 327 n n 
C5 H5A PTG sing 328 n n 
C6 C7 PTG doub 329 e n 
C6 H6 PTG sing 330 n n 
C7 C8 PTG sing 331 n n 
C7 H7 PTG sing 332 n n 
C8 C10 PTG doub 333 z n 
C8 H8 PTG sing 334 n n 
C10 C11 PTG sing 335 n n 
C10 C15 PTG sing 336 n n 
C11 O12 PTG doub 337 n n 
C13 C14 PTG doub 338 n n 
C13 H13 PTG sing 339 n n 
C14 C15 PTG sing 340 n n 
C14 H14 PTG sing 341 n n 
C15 C16 PTG sing 342 n n 
C15 H15 PTG sing 343 n n 
C16 C17 PTG sing 344 n n 
C16 H16 PTG sing 345 n n 
C16 H16A PTG sing 346 n n 
C17 C18 PTG doub 347 n n 
C17 H17 PTG sing 348 e n 
C18 C19 PTG sing 349 n n 
C18 H18 PTG sing 350 n n 
C19 C20 PTG sing 351 n n 
C19 H19 PTG sing 352 n n 
C19 H19A PTG sing 353 n n 
C20 C21 PTG sing 354 n n 
C20 H20 PTG sing 355 n n 
C20 H20A PTG sing 356 n n 
C21 C22 PTG sing 357 n n 
C21 H21 PTG sing 358 n n 
C21 H21A PTG sing 359 n n 
C22 O23 PTG doub 360 n n 
C22 O24 PTG sing 361 n n 
C13 C11 PTG sing 362 n n 
O24 H28 PTG sing 363 n n 
#
_atom_sites.entry_id                     2ZK2 
_atom_sites.fract_transf_matrix[1][1]    0.010709 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002476 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GSH A 1 1 1 GSH GSH . 
D 3 PTG A 1 477 477 PTG PTG . 
E 4 HOH A 1 1003 1003 HOH HOH . 
E 4 HOH A 2 1005 1005 HOH HOH . 
E 4 HOH A 3 1006 1006 HOH HOH . 
E 4 HOH A 4 1009 1009 HOH HOH . 
E 4 HOH A 5 1010 1010 HOH HOH . 
E 4 HOH A 6 1011 1011 HOH HOH . 
E 4 HOH A 7 1013 1013 HOH HOH . 
E 4 HOH A 8 1015 1015 HOH HOH . 
E 4 HOH A 9 1017 1017 HOH HOH . 
E 4 HOH A 10 1018 1018 HOH HOH . 
E 4 HOH A 11 1019 1019 HOH HOH . 
E 4 HOH A 12 1020 1020 HOH HOH . 
E 4 HOH A 13 1022 1022 HOH HOH . 
E 4 HOH A 14 1024 1024 HOH HOH . 
E 4 HOH A 15 1025 1025 HOH HOH . 
E 4 HOH A 16 1027 1027 HOH HOH . 
E 4 HOH A 17 1028 1028 HOH HOH . 
E 4 HOH A 18 1029 1029 HOH HOH . 
E 4 HOH A 19 1032 1032 HOH HOH . 
E 4 HOH A 20 1033 1033 HOH HOH . 
E 4 HOH A 21 1036 1036 HOH HOH . 
E 4 HOH A 22 1038 1038 HOH HOH . 
E 4 HOH A 23 1040 1040 HOH HOH . 
E 4 HOH A 24 1042 1042 HOH HOH . 
E 4 HOH A 25 1046 1046 HOH HOH . 
E 4 HOH A 26 1048 1048 HOH HOH . 
E 4 HOH A 27 1049 1049 HOH HOH . 
E 4 HOH A 28 1051 1051 HOH HOH . 
E 4 HOH A 29 1053 1053 HOH HOH . 
E 4 HOH A 30 1054 1054 HOH HOH . 
E 4 HOH A 31 1056 1056 HOH HOH . 
E 4 HOH A 32 1057 1057 HOH HOH . 
E 4 HOH A 33 1058 1058 HOH HOH . 
E 4 HOH A 34 1060 1060 HOH HOH . 
E 4 HOH A 35 1061 1061 HOH HOH . 
E 4 HOH A 36 1062 1062 HOH HOH . 
E 4 HOH A 37 1063 1063 HOH HOH . 
E 4 HOH A 38 1064 1064 HOH HOH . 
E 4 HOH A 39 1066 1066 HOH HOH . 
E 4 HOH A 40 1067 1067 HOH HOH . 
E 4 HOH A 41 1069 1069 HOH HOH . 
E 4 HOH A 42 1070 1070 HOH HOH . 
E 4 HOH A 43 1071 1071 HOH HOH . 
E 4 HOH A 44 1072 1072 HOH HOH . 
E 4 HOH A 45 1074 1074 HOH HOH . 
E 4 HOH A 46 1075 1075 HOH HOH . 
E 4 HOH A 47 1076 1076 HOH HOH . 
E 4 HOH A 48 1078 1078 HOH HOH . 
E 4 HOH A 49 1079 1079 HOH HOH . 
E 4 HOH A 50 1080 1080 HOH HOH . 
E 4 HOH A 51 1081 1081 HOH HOH . 
E 4 HOH A 52 1084 1084 HOH HOH . 
E 4 HOH A 53 1086 1086 HOH HOH . 
E 4 HOH A 54 1087 1087 HOH HOH . 
F 4 HOH B 1 1001 1001 HOH HOH . 
F 4 HOH B 2 1002 1002 HOH HOH . 
F 4 HOH B 3 1004 1004 HOH HOH . 
F 4 HOH B 4 1007 1007 HOH HOH . 
F 4 HOH B 5 1008 1008 HOH HOH . 
F 4 HOH B 6 1012 1012 HOH HOH . 
F 4 HOH B 7 1016 1016 HOH HOH . 
F 4 HOH B 8 1021 1021 HOH HOH . 
F 4 HOH B 9 1023 1023 HOH HOH . 
F 4 HOH B 10 1026 1026 HOH HOH . 
F 4 HOH B 11 1030 1030 HOH HOH . 
F 4 HOH B 12 1031 1031 HOH HOH . 
F 4 HOH B 13 1034 1034 HOH HOH . 
F 4 HOH B 14 1037 1037 HOH HOH . 
F 4 HOH B 15 1039 1039 HOH HOH . 
F 4 HOH B 16 1041 1041 HOH HOH . 
F 4 HOH B 17 1043 1043 HOH HOH . 
F 4 HOH B 18 1045 1045 HOH HOH . 
F 4 HOH B 19 1047 1047 HOH HOH . 
F 4 HOH B 20 1050 1050 HOH HOH . 
F 4 HOH B 21 1052 1052 HOH HOH . 
F 4 HOH B 22 1055 1055 HOH HOH . 
F 4 HOH B 23 1059 1059 HOH HOH . 
F 4 HOH B 24 1065 1065 HOH HOH . 
F 4 HOH B 25 1068 1068 HOH HOH . 
F 4 HOH B 26 1073 1073 HOH HOH . 
F 4 HOH B 27 1077 1077 HOH HOH . 
F 4 HOH B 28 1082 1082 HOH HOH . 
F 4 HOH B 29 1083 1083 HOH HOH . 
F 4 HOH B 30 1085 1085 HOH HOH . 
F 4 HOH B 31 1088 1088 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTG . . . D 3 19.794 65.172 20.828 1 53.98 ? C1 PTG 477 A 1 
HETATM 2 C C2 PTG . . . D 3 18.614 65.586 19.965 1 53.26 ? C2 PTG 477 A 1 
HETATM 3 C C3 PTG . . . D 3 18.198 64.513 18.962 1 57.59 ? C3 PTG 477 A 1 
HETATM 4 C C4 PTG . . . D 3 19.209 64.296 17.812 1 58.74 ? C4 PTG 477 A 1 
HETATM 5 C C5 PTG . . . D 3 18.715 63.207 16.854 1 61.42 ? C5 PTG 477 A 1 
HETATM 6 C C6 PTG . . . D 3 19.721 63.003 15.744 1 61.92 ? C6 PTG 477 A 1 
HETATM 7 C C7 PTG . . . D 3 19.668 63.582 14.561 1 63.27 ? C7 PTG 477 A 1 
HETATM 8 C C8 PTG . . . D 3 18.526 64.552 14.23 1 65 ? C8 PTG 477 A 1 
HETATM 9 C C10 PTG . . . D 3 17.768 64.255 12.892 1 66.83 ? C10 PTG 477 A 1 
HETATM 10 C C11 PTG . . . D 3 18.328 64.636 11.545 1 67.5 ? C11 PTG 477 A 1 
HETATM 11 O O12 PTG . . . D 3 19.435 65.094 11.339 1 68.07 ? O12 PTG 477 A 1 
HETATM 12 C C13 PTG . . . D 3 17.447 64.394 10.593 1 67.77 ? C13 PTG 477 A 1 
HETATM 13 C C14 PTG . . . D 3 16.289 63.879 11.114 1 69.01 ? C14 PTG 477 A 1 
HETATM 14 C C15 PTG . . . D 3 16.438 63.507 12.633 1 68.23 ? C15 PTG 477 A 1 
HETATM 15 C C16 PTG . . . D 3 15.225 64.054 13.444 1 68.54 ? C16 PTG 477 A 1 
HETATM 16 C C17 PTG . . . D 3 14.991 63.469 14.823 1 68.01 ? C17 PTG 477 A 1 
HETATM 17 C C18 PTG . . . D 3 13.946 62.685 15.112 1 68 ? C18 PTG 477 A 1 
HETATM 18 C C19 PTG . . . D 3 12.855 62.259 14.125 1 66.58 ? C19 PTG 477 A 1 
HETATM 19 C C20 PTG . . . D 3 12.287 60.843 14.488 1 65.97 ? C20 PTG 477 A 1 
HETATM 20 C C21 PTG . . . D 3 11.67 60.782 15.916 1 66.01 ? C21 PTG 477 A 1 
HETATM 21 C C22 PTG . . . D 3 10.195 60.282 15.94 1 66.35 ? C22 PTG 477 A 1 
HETATM 22 O O23 PTG . . . D 3 9.53 60.39 14.893 1 68.13 ? O23 PTG 477 A 1 
HETATM 23 O O24 PTG . . . D 3 9.766 59.806 17.027 1 64.23 ? O24 PTG 477 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#