data_2ZK3
#
_model_server_result.job_id            52M3JlffJ8amYU7fvOP6dQ 
_model_server_result.datetime_utc      '2024-11-23 00:06:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zk3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    2ZK3 
#
_exptl.entry_id    2ZK3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.45 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5E,11E,14E)-8-oxoicosa-5,9,11,14-tetraenoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103 
_cell.angle_gamma         90 
_cell.entry_id            2ZK3 
_cell.length_a            93.303 
_cell.length_b            60.994 
_cell.length_c            118.39 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZK3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6515 30.497 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C11 OCX . A OCX 1 1_555 A SG CYS 95 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
covale ? covale2 D C11 OCX . B OCX 2 1_555 B SG CYS 95 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
#
_chem_comp.formula           'C20 H30 O3' 
_chem_comp.formula_weight    318.45 
_chem_comp.id                OCX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5E,11E,14E)-8-oxoicosa-5,9,11,14-tetraenoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '8-oxo-eicosatetraenoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCX sing 237 n n 
C1 H1 OCX sing 238 n n 
C1 H1A OCX sing 239 n n 
C1 H1B OCX sing 240 n n 
C2 C3 OCX sing 241 n n 
C2 H2 OCX sing 242 n n 
C2 H2A OCX sing 243 n n 
C3 C4 OCX sing 244 n n 
C3 H3 OCX sing 245 n n 
C3 H3A OCX sing 246 n n 
C4 C5 OCX sing 247 n n 
C4 H4 OCX sing 248 n n 
C4 H4A OCX sing 249 n n 
C5 C6 OCX sing 250 n n 
C5 H5 OCX sing 251 n n 
C5 H5A OCX sing 252 n n 
C6 C7 OCX doub 253 e n 
C6 H6 OCX sing 254 n n 
C7 C8 OCX sing 255 n n 
C7 H7 OCX sing 256 n n 
C8 C9 OCX sing 257 n n 
C8 H8 OCX sing 258 n n 
C8 H8A OCX sing 259 n n 
C9 C10 OCX doub 260 e n 
C9 H9 OCX sing 261 n n 
C10 C11 OCX sing 262 n n 
C10 H10 OCX sing 263 n n 
C11 C13 OCX doub 264 e n 
C11 H11 OCX sing 265 n n 
C13 C14 OCX sing 266 n n 
C13 H13 OCX sing 267 n n 
C14 O15 OCX doub 268 n n 
C14 C16 OCX sing 269 n n 
C16 C17 OCX sing 270 n n 
C16 H16 OCX sing 271 n n 
C16 H16A OCX sing 272 n n 
C17 C18 OCX doub 273 e n 
C17 H17 OCX sing 274 n n 
C18 C19 OCX sing 275 n n 
C18 H18 OCX sing 276 n n 
C19 C20 OCX sing 277 n n 
C19 H19 OCX sing 278 n n 
C19 H19A OCX sing 279 n n 
C20 C21 OCX sing 280 n n 
C20 H20 OCX sing 281 n n 
C20 H20A OCX sing 282 n n 
C21 C22 OCX sing 283 n n 
C21 H21 OCX sing 284 n n 
C21 H21A OCX sing 285 n n 
C22 O23 OCX sing 286 n n 
C22 O24 OCX doub 287 n n 
O23 H30 OCX sing 288 n n 
#
_atom_sites.entry_id                     2ZK3 
_atom_sites.fract_transf_matrix[1][1]    0.010718 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002474 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016395 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OCX A 1 1 1 OCX OCX . 
D 2 OCX B 1 2 2 OCX OCX . 
E 3 HOH A 1 1003 1003 HOH HOH . 
E 3 HOH A 2 1004 1004 HOH HOH . 
E 3 HOH A 3 1005 1005 HOH HOH . 
E 3 HOH A 4 1009 1009 HOH HOH . 
E 3 HOH A 5 1013 1013 HOH HOH . 
E 3 HOH A 6 1016 1016 HOH HOH . 
E 3 HOH A 7 1017 1017 HOH HOH . 
E 3 HOH A 8 1018 1018 HOH HOH . 
E 3 HOH A 9 1020 1020 HOH HOH . 
E 3 HOH A 10 1022 1022 HOH HOH . 
E 3 HOH A 11 1023 1023 HOH HOH . 
E 3 HOH A 12 1026 1026 HOH HOH . 
E 3 HOH A 13 1027 1027 HOH HOH . 
E 3 HOH A 14 1029 1029 HOH HOH . 
E 3 HOH A 15 1031 1031 HOH HOH . 
E 3 HOH A 16 1033 1033 HOH HOH . 
E 3 HOH A 17 1034 1034 HOH HOH . 
E 3 HOH A 18 1035 1035 HOH HOH . 
E 3 HOH A 19 1037 1037 HOH HOH . 
E 3 HOH A 20 1038 1038 HOH HOH . 
E 3 HOH A 21 1039 1039 HOH HOH . 
E 3 HOH A 22 1041 1041 HOH HOH . 
E 3 HOH A 23 1042 1042 HOH HOH . 
E 3 HOH A 24 1043 1043 HOH HOH . 
E 3 HOH A 25 1044 1044 HOH HOH . 
E 3 HOH A 26 1047 1047 HOH HOH . 
E 3 HOH A 27 1050 1050 HOH HOH . 
E 3 HOH A 28 1054 1054 HOH HOH . 
E 3 HOH A 29 1055 1055 HOH HOH . 
E 3 HOH A 30 1057 1057 HOH HOH . 
E 3 HOH A 31 1059 1059 HOH HOH . 
E 3 HOH A 32 1060 1060 HOH HOH . 
E 3 HOH A 33 1062 1062 HOH HOH . 
E 3 HOH A 34 1063 1063 HOH HOH . 
E 3 HOH A 35 1067 1067 HOH HOH . 
E 3 HOH A 36 1068 1068 HOH HOH . 
E 3 HOH A 37 1069 1069 HOH HOH . 
F 3 HOH B 1 1001 1001 HOH HOH . 
F 3 HOH B 2 1002 1002 HOH HOH . 
F 3 HOH B 3 1006 1006 HOH HOH . 
F 3 HOH B 4 1007 1007 HOH HOH . 
F 3 HOH B 5 1008 1008 HOH HOH . 
F 3 HOH B 6 1010 1010 HOH HOH . 
F 3 HOH B 7 1011 1011 HOH HOH . 
F 3 HOH B 8 1012 1012 HOH HOH . 
F 3 HOH B 9 1014 1014 HOH HOH . 
F 3 HOH B 10 1015 1015 HOH HOH . 
F 3 HOH B 11 1019 1019 HOH HOH . 
F 3 HOH B 12 1024 1024 HOH HOH . 
F 3 HOH B 13 1028 1028 HOH HOH . 
F 3 HOH B 14 1030 1030 HOH HOH . 
F 3 HOH B 15 1032 1032 HOH HOH . 
F 3 HOH B 16 1036 1036 HOH HOH . 
F 3 HOH B 17 1040 1040 HOH HOH . 
F 3 HOH B 18 1045 1045 HOH HOH . 
F 3 HOH B 19 1048 1048 HOH HOH . 
F 3 HOH B 20 1049 1049 HOH HOH . 
F 3 HOH B 21 1051 1051 HOH HOH . 
F 3 HOH B 22 1052 1052 HOH HOH . 
F 3 HOH B 23 1053 1053 HOH HOH . 
F 3 HOH B 24 1056 1056 HOH HOH . 
F 3 HOH B 25 1058 1058 HOH HOH . 
F 3 HOH B 26 1061 1061 HOH HOH . 
F 3 HOH B 27 1064 1064 HOH HOH . 
F 3 HOH B 28 1065 1065 HOH HOH . 
F 3 HOH B 29 1066 1066 HOH HOH . 
F 3 HOH B 30 1070 1070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCX . . . D 2 32.22 29.614 38.641 1 59.01 ? C1 OCX 2 B 1 
HETATM 2 C C2 OCX . . . D 2 31.727 30.953 38.086 1 60.55 ? C2 OCX 2 B 1 
HETATM 3 C C3 OCX . . . D 2 32.847 31.995 38.095 1 62.18 ? C3 OCX 2 B 1 
HETATM 4 C C4 OCX . . . D 2 32.547 33.192 37.176 1 64.02 ? C4 OCX 2 B 1 
HETATM 5 C C5 OCX . . . D 2 33.428 34.411 37.522 1 66.45 ? C5 OCX 2 B 1 
HETATM 6 C C6 OCX . . . D 2 34.676 34.473 36.648 1 67.34 ? C6 OCX 2 B 1 
HETATM 7 C C7 OCX . . . D 2 35.519 35.512 36.641 1 68.9 ? C7 OCX 2 B 1 
HETATM 8 C C8 OCX . . . D 2 35.354 36.767 37.499 1 69.42 ? C8 OCX 2 B 1 
HETATM 9 C C9 OCX . . . D 2 36.475 36.835 38.526 1 70.35 ? C9 OCX 2 B 1 
HETATM 10 C C10 OCX . . . D 2 37.047 37.964 38.98 1 71.08 ? C10 OCX 2 B 1 
HETATM 11 C C11 OCX . . . D 2 36.663 39.418 38.55 1 69.59 ? C11 OCX 2 B 1 
HETATM 12 C C13 OCX . . . D 2 37.099 39.733 37.094 1 72.56 ? C13 OCX 2 B 1 
HETATM 13 C C14 OCX . . . D 2 36.148 40.689 36.308 1 71.74 ? C14 OCX 2 B 1 
HETATM 14 O O15 OCX . . . D 2 35.118 41.094 36.89 1 71.17 ? O15 OCX 2 B 1 
HETATM 15 C C16 OCX . . . D 2 36.519 41.266 34.929 1 71.16 ? C16 OCX 2 B 1 
HETATM 16 C C17 OCX . . . D 2 36.936 40.164 33.96 1 69.58 ? C17 OCX 2 B 1 
HETATM 17 C C18 OCX . . . D 2 37.662 40.389 32.874 1 67.66 ? C18 OCX 2 B 1 
HETATM 18 C C19 OCX . . . D 2 38.148 41.758 32.483 1 65.19 ? C19 OCX 2 B 1 
HETATM 19 C C20 OCX . . . D 2 39.653 41.829 32.491 1 65.57 ? C20 OCX 2 B 1 
HETATM 20 C C21 OCX . . . D 2 40.231 41.458 31.107 1 64.74 ? C21 OCX 2 B 1 
HETATM 21 C C22 OCX . . . D 2 41.664 40.861 31.207 1 64.97 ? C22 OCX 2 B 1 
HETATM 22 O O23 OCX . . . D 2 42.161 40.728 32.369 1 63.62 ? O23 OCX 2 B 1 
HETATM 23 O O24 OCX . . . D 2 42.224 40.557 30.122 1 64.26 ? O24 OCX 2 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#