data_2ZK5
#
_model_server_result.job_id            uab5gp-_oxiIz3y9iiseLA 
_model_server_result.datetime_utc      '2024-11-22 09:47:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zk5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    2ZK5 
#
_exptl.entry_id    2ZK5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.294 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.34 
_cell.angle_gamma         90 
_cell.entry_id            2ZK5 
_cell.length_a            92.922 
_cell.length_b            61.725 
_cell.length_c            118.042 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1 
B,D,F 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.461 30.8625 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C8 NRO . A NRO 1 1_555 A SG CYS 95 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
covale ? covale2 D C8 NRO . B NRO 2 1_555 B SG CYS 95 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
#
_chem_comp.formula           'C16 H15 N O5' 
_chem_comp.formula_weight    301.294 
_chem_comp.id                NRO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NRO sing 237 n n 
C2 C3 NRO sing 238 n n 
C3 C4 NRO sing 239 n n 
C4 C8 NRO doub 240 n n 
C4 N5 NRO sing 241 n n 
C8 C10 NRO sing 242 n n 
C10 O11 NRO sing 243 n y 
C10 C12 NRO doub 244 n y 
C14 C15 NRO sing 245 n y 
C14 O11 NRO sing 246 n y 
C14 C13 NRO doub 247 z y 
C15 C16 NRO doub 248 n y 
C15 C17 NRO sing 249 n y 
C16 C20 NRO sing 250 n y 
C17 C18 NRO doub 251 n y 
C19 C20 NRO doub 252 n y 
C19 C18 NRO sing 253 n y 
C20 C21 NRO sing 254 n n 
C21 O22 NRO doub 255 n n 
C21 O23 NRO sing 256 n n 
N5 O6 NRO doub 257 n n 
N5 O7 NRO sing 258 n n 
C12 C13 NRO sing 259 n y 
C1 H1 NRO sing 260 n n 
C1 H1A NRO sing 261 n n 
C1 H1B NRO sing 262 n n 
C2 H2 NRO sing 263 n n 
C2 H2A NRO sing 264 n n 
C3 H3 NRO sing 265 n n 
C3 H3A NRO sing 266 n n 
C8 H8 NRO sing 267 n n 
C16 H16 NRO sing 268 n n 
C17 H17 NRO sing 269 n n 
C19 H19 NRO sing 270 n n 
C12 H12 NRO sing 271 n n 
C13 H13 NRO sing 272 n n 
C18 H18 NRO sing 273 n n 
O23 HO23 NRO sing 274 n n 
#
_atom_sites.entry_id                     2ZK5 
_atom_sites.fract_transf_matrix[1][1]    0.010762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002354 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NRO A 1 1 1 NRO NRO . 
D 2 NRO B 1 2 2 NRO NRO . 
E 3 HOH A 1 1002 1002 HOH HOH . 
E 3 HOH A 2 1003 1003 HOH HOH . 
E 3 HOH A 3 1013 1013 HOH HOH . 
E 3 HOH A 4 1014 1014 HOH HOH . 
E 3 HOH A 5 1015 1015 HOH HOH . 
E 3 HOH A 6 1020 1020 HOH HOH . 
E 3 HOH A 7 1022 1022 HOH HOH . 
E 3 HOH A 8 1023 1023 HOH HOH . 
E 3 HOH A 9 1024 1024 HOH HOH . 
E 3 HOH A 10 1025 1025 HOH HOH . 
E 3 HOH A 11 1027 1027 HOH HOH . 
E 3 HOH A 12 1028 1028 HOH HOH . 
E 3 HOH A 13 1029 1029 HOH HOH . 
E 3 HOH A 14 1030 1030 HOH HOH . 
E 3 HOH A 15 1033 1033 HOH HOH . 
E 3 HOH A 16 1034 1034 HOH HOH . 
E 3 HOH A 17 1036 1036 HOH HOH . 
E 3 HOH A 18 1037 1037 HOH HOH . 
E 3 HOH A 19 1039 1039 HOH HOH . 
E 3 HOH A 20 1043 1043 HOH HOH . 
E 3 HOH A 21 1044 1044 HOH HOH . 
E 3 HOH A 22 1048 1048 HOH HOH . 
E 3 HOH A 23 1049 1049 HOH HOH . 
E 3 HOH A 24 1050 1050 HOH HOH . 
E 3 HOH A 25 1052 1052 HOH HOH . 
E 3 HOH A 26 1053 1053 HOH HOH . 
E 3 HOH A 27 1054 1054 HOH HOH . 
E 3 HOH A 28 1055 1055 HOH HOH . 
E 3 HOH A 29 1057 1057 HOH HOH . 
E 3 HOH A 30 1058 1058 HOH HOH . 
E 3 HOH A 31 1059 1059 HOH HOH . 
E 3 HOH A 32 1061 1061 HOH HOH . 
E 3 HOH A 33 1065 1065 HOH HOH . 
E 3 HOH A 34 1068 1068 HOH HOH . 
E 3 HOH A 35 1069 1069 HOH HOH . 
E 3 HOH A 36 1070 1070 HOH HOH . 
E 3 HOH A 37 1071 1071 HOH HOH . 
E 3 HOH A 38 1077 1077 HOH HOH . 
E 3 HOH A 39 1079 1079 HOH HOH . 
E 3 HOH A 40 1080 1080 HOH HOH . 
F 3 HOH B 1 1006 1006 HOH HOH . 
F 3 HOH B 2 1007 1007 HOH HOH . 
F 3 HOH B 3 1008 1008 HOH HOH . 
F 3 HOH B 4 1009 1009 HOH HOH . 
F 3 HOH B 5 1010 1010 HOH HOH . 
F 3 HOH B 6 1011 1011 HOH HOH . 
F 3 HOH B 7 1012 1012 HOH HOH . 
F 3 HOH B 8 1016 1016 HOH HOH . 
F 3 HOH B 9 1018 1018 HOH HOH . 
F 3 HOH B 10 1026 1026 HOH HOH . 
F 3 HOH B 11 1031 1031 HOH HOH . 
F 3 HOH B 12 1032 1032 HOH HOH . 
F 3 HOH B 13 1035 1035 HOH HOH . 
F 3 HOH B 14 1038 1038 HOH HOH . 
F 3 HOH B 15 1040 1040 HOH HOH . 
F 3 HOH B 16 1041 1041 HOH HOH . 
F 3 HOH B 17 1042 1042 HOH HOH . 
F 3 HOH B 18 1045 1045 HOH HOH . 
F 3 HOH B 19 1046 1046 HOH HOH . 
F 3 HOH B 20 1056 1056 HOH HOH . 
F 3 HOH B 21 1060 1060 HOH HOH . 
F 3 HOH B 22 1062 1062 HOH HOH . 
F 3 HOH B 23 1063 1063 HOH HOH . 
F 3 HOH B 24 1066 1066 HOH HOH . 
F 3 HOH B 25 1067 1067 HOH HOH . 
F 3 HOH B 26 1072 1072 HOH HOH . 
F 3 HOH B 27 1073 1073 HOH HOH . 
F 3 HOH B 28 1074 1074 HOH HOH . 
F 3 HOH B 29 1075 1075 HOH HOH . 
F 3 HOH B 30 1076 1076 HOH HOH . 
F 3 HOH B 31 1078 1078 HOH HOH . 
F 3 HOH B 32 1081 1081 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NRO . . . C 2 14.291 63.708 14.665 1 62.1 ? C1 NRO 1 A 1 
HETATM 2 C C2 NRO . . . C 2 15.238 63.29 13.533 1 62.46 ? C2 NRO 1 A 1 
HETATM 3 C C3 NRO . . . C 2 16.305 64.372 13.25 1 60.95 ? C3 NRO 1 A 1 
HETATM 4 C C4 NRO . . . C 2 17.24 63.955 12.1 1 60.33 ? C4 NRO 1 A 1 
HETATM 5 C C8 NRO . . . C 2 18.526 64.838 12.026 1 57.01 ? C8 NRO 1 A 1 
HETATM 6 C C10 NRO . . . C 2 18.585 65.696 10.728 1 56.92 ? C10 NRO 1 A 1 
HETATM 7 C C14 NRO . . . C 2 18.153 67.169 9.179 1 56.35 ? C14 NRO 1 A 1 
HETATM 8 C C15 NRO . . . C 2 17.504 68.239 8.496 1 55.46 ? C15 NRO 1 A 1 
HETATM 9 C C16 NRO . . . C 2 16.08 68.409 8.619 1 54.45 ? C16 NRO 1 A 1 
HETATM 10 C C17 NRO . . . C 2 18.261 69.16 7.685 1 55.96 ? C17 NRO 1 A 1 
HETATM 11 C C19 NRO . . . C 2 16.21 70.415 7.131 1 56.2 ? C19 NRO 1 A 1 
HETATM 12 C C20 NRO . . . C 2 15.421 69.506 7.935 1 56.25 ? C20 NRO 1 A 1 
HETATM 13 C C21 NRO . . . C 2 13.899 69.709 8.051 1 57.69 ? C21 NRO 1 A 1 
HETATM 14 N N5 NRO . . . C 2 16.503 63.996 10.782 1 61.39 ? N5 NRO 1 A 1 
HETATM 15 O O6 NRO . . . C 2 17.103 63.408 9.648 1 62.93 ? O6 NRO 1 A 1 
HETATM 16 O O7 NRO . . . C 2 15.208 64.592 10.624 1 63.33 ? O7 NRO 1 A 1 
HETATM 17 O O11 NRO . . . C 2 17.72 66.698 10.402 1 56.8 ? O11 NRO 1 A 1 
HETATM 18 C C12 NRO . . . C 2 19.498 65.552 9.77 1 56.28 ? C12 NRO 1 A 1 
HETATM 19 C C13 NRO . . . C 2 19.236 66.452 8.822 1 56.14 ? C13 NRO 1 A 1 
HETATM 20 C C18 NRO . . . C 2 17.629 70.252 6.998 1 57.12 ? C18 NRO 1 A 1 
HETATM 21 O O22 NRO . . . C 2 13.217 68.913 8.743 1 58.56 ? O22 NRO 1 A 1 
HETATM 22 O O23 NRO . . . C 2 13.367 70.675 7.448 1 58.69 ? O23 NRO 1 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#