data_2ZK6 # _model_server_result.job_id zsum6kcKdpX1zJi03PCzqA _model_server_result.datetime_utc '2024-11-23 14:35:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 2ZK6 # _exptl.entry_id 2ZK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.302 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description difluoro(5-{2-[(5-octyl-1H-pyrrol-2-yl-kappaN)methylidene]-2H-pyrrol-5-yl-kappaN}pentanoato)boron _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.91 _cell.angle_gamma 90 _cell.entry_id 2ZK6 _cell.length_a 93.425 _cell.length_b 61.149 _cell.length_c 118.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.7125 30.5745 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H31 B F2 N2 O2' _chem_comp.formula_weight 404.302 _chem_comp.id C08 _chem_comp.mon_nstd_flag . _chem_comp.name difluoro(5-{2-[(5-octyl-1H-pyrrol-2-yl-kappaN)methylidene]-2H-pyrrol-5-yl-kappaN}pentanoato)boron _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4,4-difluoro-5-octyl-4-bora-3a,4a-diaza-s-indacene-3-pentanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 C08 sing 70 n n C01 C22 C08 doub 71 n n C02 C03 C08 doub 72 n y C02 N01 C08 sing 73 n y C03 C04 C08 sing 74 n y C04 C05 C08 doub 75 n y C05 C06 C08 sing 76 n n C05 N01 C08 sing 77 n y C06 C07 C08 sing 78 n n C07 C08 C08 sing 79 n n C08 C09 C08 sing 80 n n C09 C10 C08 sing 81 n n C10 C11 C08 sing 82 n n C11 C12 C08 sing 83 n n C12 C13 C08 sing 84 n n N01 B C08 sing 85 n n B F01 C08 sing 86 n n B N02 C08 sing 87 n n B F02 C08 sing 88 n n N02 C14 C08 doub 89 n n N02 C22 C08 sing 90 n n C14 C15 C08 sing 91 n n C14 C20 C08 sing 92 n n C15 C16 C08 sing 93 n n C16 C17 C08 sing 94 n n C17 C18 C08 sing 95 n n C18 C19 C08 sing 96 n n C19 O01 C08 sing 97 n n C19 O02 C08 doub 98 n n C20 C21 C08 doub 99 n n C21 C22 C08 sing 100 n n C01 H01 C08 sing 101 n n C03 H03 C08 sing 102 n n C04 H04 C08 sing 103 n n C06 H06 C08 sing 104 n n C06 H06A C08 sing 105 n n C07 H07 C08 sing 106 n n C07 H07A C08 sing 107 n n C08 H08 C08 sing 108 n n C08 H08A C08 sing 109 n n C09 H09 C08 sing 110 n n C09 H09A C08 sing 111 n n C10 H10 C08 sing 112 n n C10 H10A C08 sing 113 n n C11 H11 C08 sing 114 n n C11 H11A C08 sing 115 n n C12 H12 C08 sing 116 n n C12 H12A C08 sing 117 n n C13 H13 C08 sing 118 n n C13 H13A C08 sing 119 n n C13 H13B C08 sing 120 n n C15 H15 C08 sing 121 n n C15 H15A C08 sing 122 n n C16 H16 C08 sing 123 n n C16 H16A C08 sing 124 n n C17 H17 C08 sing 125 n n C17 H17A C08 sing 126 n n C18 H18 C08 sing 127 n n C18 H18A C08 sing 128 n n O01 HO01 C08 sing 129 n n C20 H20 C08 sing 130 n n C21 H21 C08 sing 131 n n # _atom_sites.entry_id 2ZK6 _atom_sites.fract_transf_matrix[1][1] 0.010704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002453 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C08 A 1 1 1 C08 C08 . D 2 C08 B 1 2 2 C08 C08 . E 3 HOH A 1 1001 1001 HOH HOH . E 3 HOH A 2 1004 1004 HOH HOH . E 3 HOH A 3 1005 1005 HOH HOH . E 3 HOH A 4 1006 1006 HOH HOH . E 3 HOH A 5 1015 1015 HOH HOH . E 3 HOH A 6 1016 1016 HOH HOH . E 3 HOH A 7 1018 1018 HOH HOH . E 3 HOH A 8 1019 1019 HOH HOH . E 3 HOH A 9 1021 1021 HOH HOH . E 3 HOH A 10 1023 1023 HOH HOH . E 3 HOH A 11 1024 1024 HOH HOH . E 3 HOH A 12 1026 1026 HOH HOH . E 3 HOH A 13 1028 1028 HOH HOH . E 3 HOH A 14 1029 1029 HOH HOH . E 3 HOH A 15 1030 1030 HOH HOH . E 3 HOH A 16 1034 1034 HOH HOH . E 3 HOH A 17 1036 1036 HOH HOH . E 3 HOH A 18 1037 1037 HOH HOH . E 3 HOH A 19 1039 1039 HOH HOH . F 3 HOH B 1 1002 1002 HOH HOH . F 3 HOH B 2 1003 1003 HOH HOH . F 3 HOH B 3 1007 1007 HOH HOH . F 3 HOH B 4 1008 1008 HOH HOH . F 3 HOH B 5 1009 1009 HOH HOH . F 3 HOH B 6 1010 1010 HOH HOH . F 3 HOH B 7 1011 1011 HOH HOH . F 3 HOH B 8 1013 1013 HOH HOH . F 3 HOH B 9 1014 1014 HOH HOH . F 3 HOH B 10 1017 1017 HOH HOH . F 3 HOH B 11 1020 1020 HOH HOH . F 3 HOH B 12 1022 1022 HOH HOH . F 3 HOH B 13 1027 1027 HOH HOH . F 3 HOH B 14 1032 1032 HOH HOH . F 3 HOH B 15 1033 1033 HOH HOH . F 3 HOH B 16 1038 1038 HOH HOH . F 3 HOH B 17 1040 1040 HOH HOH . F 3 HOH B 18 1041 1041 HOH HOH . F 3 HOH B 19 1042 1042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 C08 . . . D 2 35.621 40.183 40.567 1 74.07 ? C01 C08 2 B 1 HETATM 2 C C02 C08 . . . D 2 35.596 39.199 39.537 1 73.65 ? C02 C08 2 B 1 HETATM 3 C C03 C08 . . . D 2 35.472 39.357 38.197 1 72.92 ? C03 C08 2 B 1 HETATM 4 C C04 C08 . . . D 2 35.503 38.046 37.588 1 72.37 ? C04 C08 2 B 1 HETATM 5 C C05 C08 . . . D 2 35.65 37.109 38.564 1 71.9 ? C05 C08 2 B 1 HETATM 6 C C06 C08 . . . D 2 35.711 35.591 38.442 1 68.36 ? C06 C08 2 B 1 HETATM 7 C C07 C08 . . . D 2 35.574 34.955 37.035 1 65.35 ? C07 C08 2 B 1 HETATM 8 C C08 C08 . . . D 2 34.089 34.752 36.604 1 62.97 ? C08 C08 2 B 1 HETATM 9 C C09 C08 . . . D 2 33.321 33.722 37.463 1 61.25 ? C09 C08 2 B 1 HETATM 10 C C10 C08 . . . D 2 33.637 32.268 37.06 1 60.24 ? C10 C08 2 B 1 HETATM 11 C C11 C08 . . . D 2 32.419 31.338 37.236 1 59.21 ? C11 C08 2 B 1 HETATM 12 C C12 C08 . . . D 2 32.551 30.419 38.469 1 57.76 ? C12 C08 2 B 1 HETATM 13 C C13 C08 . . . D 2 32.015 29.013 38.2 1 55.7 ? C13 C08 2 B 1 HETATM 14 N N01 C08 . . . D 2 35.72 37.821 39.868 1 73.88 ? N01 C08 2 B 1 HETATM 15 B B C08 . . . D 2 36.985 37.667 40.722 1 74.05 ? B C08 2 B 1 HETATM 16 F F01 C08 . . . D 2 38.039 37.728 39.986 1 74.56 ? F01 C08 2 B 1 HETATM 17 N N02 C08 . . . D 2 37.083 38.715 41.778 1 74.21 ? N02 C08 2 B 1 HETATM 18 C C14 C08 . . . D 2 37.744 38.783 42.917 1 73.53 ? C14 C08 2 B 1 HETATM 19 C C15 C08 . . . D 2 38.715 37.828 43.645 1 72.87 ? C15 C08 2 B 1 HETATM 20 C C16 C08 . . . D 2 39.202 36.629 42.848 1 72.62 ? C16 C08 2 B 1 HETATM 21 C C17 C08 . . . D 2 39.462 35.393 43.715 1 72.58 ? C17 C08 2 B 1 HETATM 22 C C18 C08 . . . D 2 39.873 34.18 42.878 1 71.9 ? C18 C08 2 B 1 HETATM 23 C C19 C08 . . . D 2 38.647 33.413 42.359 1 71.61 ? C19 C08 2 B 1 HETATM 24 O O01 C08 . . . D 2 38.996 32.325 41.621 1 72.2 ? O01 C08 2 B 1 HETATM 25 O O02 C08 . . . D 2 37.461 33.682 42.542 1 69.52 ? O02 C08 2 B 1 HETATM 26 C C20 C08 . . . D 2 37.463 40.083 43.614 1 73.37 ? C20 C08 2 B 1 HETATM 27 C C21 C08 . . . D 2 36.624 40.732 42.797 1 73.32 ? C21 C08 2 B 1 HETATM 28 C C22 C08 . . . D 2 36.377 39.921 41.646 1 74.35 ? C22 C08 2 B 1 HETATM 29 F F02 C08 . . . D 2 36.878 36.501 41.267 1 74.85 ? F02 C08 2 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 29 #