data_2ZKC # _model_server_result.job_id oaMzUMKNE6hKgUE9owjVTg _model_server_result.datetime_utc '2025-01-10 08:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2ZKC # _exptl.entry_id 2ZKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZKC _cell.length_a 63.839 _cell.length_b 63.839 _cell.length_c 135.894 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -67.947 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 2ZKC _atom_sites.fract_transf_matrix[1][1] 0.015664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BPZ A 1 999 999 BPZ BPZ . C 3 GOL A 1 501 501 GOL GOL . D 3 GOL A 1 502 502 GOL GOL . E 4 HOH A 1 1 1 HOH HOH . E 4 HOH A 2 2 2 HOH HOH . E 4 HOH A 3 3 3 HOH HOH . E 4 HOH A 4 4 4 HOH HOH . E 4 HOH A 5 5 5 HOH HOH . E 4 HOH A 6 6 6 HOH HOH . E 4 HOH A 7 7 7 HOH HOH . E 4 HOH A 8 8 8 HOH HOH . E 4 HOH A 9 10 10 HOH HOH . E 4 HOH A 10 11 11 HOH HOH . E 4 HOH A 11 12 12 HOH HOH . E 4 HOH A 12 13 13 HOH HOH . E 4 HOH A 13 14 14 HOH HOH . E 4 HOH A 14 15 15 HOH HOH . E 4 HOH A 15 16 16 HOH HOH . E 4 HOH A 16 17 17 HOH HOH . E 4 HOH A 17 18 18 HOH HOH . E 4 HOH A 18 19 19 HOH HOH . E 4 HOH A 19 20 20 HOH HOH . E 4 HOH A 20 21 21 HOH HOH . E 4 HOH A 21 22 22 HOH HOH . E 4 HOH A 22 23 23 HOH HOH . E 4 HOH A 23 24 24 HOH HOH . E 4 HOH A 24 25 25 HOH HOH . E 4 HOH A 25 26 26 HOH HOH . E 4 HOH A 26 28 28 HOH HOH . E 4 HOH A 27 29 29 HOH HOH . E 4 HOH A 28 30 30 HOH HOH . E 4 HOH A 29 31 31 HOH HOH . E 4 HOH A 30 32 32 HOH HOH . E 4 HOH A 31 33 33 HOH HOH . E 4 HOH A 32 34 34 HOH HOH . E 4 HOH A 33 35 35 HOH HOH . E 4 HOH A 34 36 36 HOH HOH . E 4 HOH A 35 37 37 HOH HOH . E 4 HOH A 36 38 38 HOH HOH . E 4 HOH A 37 40 40 HOH HOH . E 4 HOH A 38 41 41 HOH HOH . E 4 HOH A 39 42 42 HOH HOH . E 4 HOH A 40 43 43 HOH HOH . E 4 HOH A 41 44 44 HOH HOH . E 4 HOH A 42 45 45 HOH HOH . E 4 HOH A 43 46 46 HOH HOH . E 4 HOH A 44 48 48 HOH HOH . E 4 HOH A 45 49 49 HOH HOH . E 4 HOH A 46 50 50 HOH HOH . E 4 HOH A 47 51 51 HOH HOH . E 4 HOH A 48 52 52 HOH HOH . E 4 HOH A 49 53 53 HOH HOH . E 4 HOH A 50 54 54 HOH HOH . E 4 HOH A 51 55 55 HOH HOH . E 4 HOH A 52 56 56 HOH HOH . E 4 HOH A 53 57 57 HOH HOH . E 4 HOH A 54 58 58 HOH HOH . E 4 HOH A 55 59 59 HOH HOH . E 4 HOH A 56 60 60 HOH HOH . E 4 HOH A 57 61 61 HOH HOH . E 4 HOH A 58 62 62 HOH HOH . E 4 HOH A 59 63 63 HOH HOH . E 4 HOH A 60 64 64 HOH HOH . E 4 HOH A 61 65 65 HOH HOH . E 4 HOH A 62 66 66 HOH HOH . E 4 HOH A 63 67 67 HOH HOH . E 4 HOH A 64 68 68 HOH HOH . E 4 HOH A 65 69 69 HOH HOH . E 4 HOH A 66 70 70 HOH HOH . E 4 HOH A 67 71 71 HOH HOH . E 4 HOH A 68 72 72 HOH HOH . E 4 HOH A 69 74 74 HOH HOH . E 4 HOH A 70 75 75 HOH HOH . E 4 HOH A 71 76 76 HOH HOH . E 4 HOH A 72 77 77 HOH HOH . E 4 HOH A 73 79 79 HOH HOH . E 4 HOH A 74 80 80 HOH HOH . E 4 HOH A 75 81 81 HOH HOH . E 4 HOH A 76 82 82 HOH HOH . E 4 HOH A 77 83 83 HOH HOH . E 4 HOH A 78 84 84 HOH HOH . E 4 HOH A 79 85 85 HOH HOH . E 4 HOH A 80 86 86 HOH HOH . E 4 HOH A 81 87 87 HOH HOH . E 4 HOH A 82 88 88 HOH HOH . E 4 HOH A 83 90 90 HOH HOH . E 4 HOH A 84 92 92 HOH HOH . E 4 HOH A 85 93 93 HOH HOH . E 4 HOH A 86 94 94 HOH HOH . E 4 HOH A 87 95 95 HOH HOH . E 4 HOH A 88 96 96 HOH HOH . E 4 HOH A 89 97 97 HOH HOH . E 4 HOH A 90 98 98 HOH HOH . E 4 HOH A 91 99 99 HOH HOH . E 4 HOH A 92 100 100 HOH HOH . E 4 HOH A 93 101 101 HOH HOH . E 4 HOH A 94 102 102 HOH HOH . E 4 HOH A 95 103 103 HOH HOH . E 4 HOH A 96 105 105 HOH HOH . E 4 HOH A 97 106 106 HOH HOH . E 4 HOH A 98 107 107 HOH HOH . E 4 HOH A 99 108 108 HOH HOH . E 4 HOH A 100 110 110 HOH HOH . E 4 HOH A 101 111 111 HOH HOH . E 4 HOH A 102 112 112 HOH HOH . E 4 HOH A 103 113 113 HOH HOH . E 4 HOH A 104 114 114 HOH HOH . E 4 HOH A 105 115 115 HOH HOH . E 4 HOH A 106 116 116 HOH HOH . E 4 HOH A 107 117 117 HOH HOH . E 4 HOH A 108 118 118 HOH HOH . E 4 HOH A 109 120 120 HOH HOH . E 4 HOH A 110 121 121 HOH HOH . E 4 HOH A 111 122 122 HOH HOH . E 4 HOH A 112 123 123 HOH HOH . E 4 HOH A 113 125 125 HOH HOH . E 4 HOH A 114 127 127 HOH HOH . E 4 HOH A 115 128 128 HOH HOH . E 4 HOH A 116 129 129 HOH HOH . E 4 HOH A 117 130 130 HOH HOH . E 4 HOH A 118 131 131 HOH HOH . E 4 HOH A 119 133 133 HOH HOH . E 4 HOH A 120 134 134 HOH HOH . E 4 HOH A 121 135 135 HOH HOH . E 4 HOH A 122 136 136 HOH HOH . E 4 HOH A 123 138 138 HOH HOH . E 4 HOH A 124 139 139 HOH HOH . E 4 HOH A 125 142 142 HOH HOH . E 4 HOH A 126 143 143 HOH HOH . E 4 HOH A 127 147 147 HOH HOH . E 4 HOH A 128 149 149 HOH HOH . E 4 HOH A 129 150 150 HOH HOH . E 4 HOH A 130 151 151 HOH HOH . E 4 HOH A 131 152 152 HOH HOH . E 4 HOH A 132 153 153 HOH HOH . E 4 HOH A 133 155 155 HOH HOH . E 4 HOH A 134 156 156 HOH HOH . E 4 HOH A 135 157 157 HOH HOH . E 4 HOH A 136 158 158 HOH HOH . E 4 HOH A 137 159 159 HOH HOH . E 4 HOH A 138 160 160 HOH HOH . E 4 HOH A 139 161 161 HOH HOH . E 4 HOH A 140 162 162 HOH HOH . E 4 HOH A 141 163 163 HOH HOH . E 4 HOH A 142 164 164 HOH HOH . E 4 HOH A 143 165 165 HOH HOH . E 4 HOH A 144 166 166 HOH HOH . E 4 HOH A 145 167 167 HOH HOH . E 4 HOH A 146 168 168 HOH HOH . E 4 HOH A 147 169 169 HOH HOH . E 4 HOH A 148 170 170 HOH HOH . E 4 HOH A 149 171 171 HOH HOH . E 4 HOH A 150 172 172 HOH HOH . E 4 HOH A 151 173 173 HOH HOH . E 4 HOH A 152 174 174 HOH HOH . E 4 HOH A 153 175 175 HOH HOH . E 4 HOH A 154 176 176 HOH HOH . E 4 HOH A 155 177 177 HOH HOH . E 4 HOH A 156 178 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -12.454 -18.033 -26.082 1 45.73 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 3 -12.348 -19.083 -27.024 1 48.07 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 3 -11.082 -17.435 -25.789 1 43.1 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 3 -10.658 -17.763 -24.469 1 44.48 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 3 -11.048 -15.93 -26.084 1 41.92 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 3 -11.947 -15.149 -25.316 1 34.55 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #