data_2ZKJ # _model_server_result.job_id K8KLW1ZkbzfYJGo_5V4euA _model_server_result.datetime_utc '2024-11-16 16:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2ZKJ # _exptl.entry_id 2ZKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.1 _cell.angle_gamma 90 _cell.entry_id 2ZKJ _cell.length_a 71.616 _cell.length_b 68.743 _cell.length_c 81.554 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -34.3715 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 241 A ASN 258 1_555 C MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 C MG MG . A MG 500 1_555 D O1A ADP . A ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 C MG MG . A MG 500 1_555 D O3B ADP . A ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 C MG MG . A MG 500 1_555 E O1 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 C MG MG . A MG 500 1_555 I O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 C MG MG . A MG 500 1_555 I O HOH . A HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 B OD1 ASN 241 B ASN 258 1_555 F MG MG . B MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc8 F MG MG . B MG 500 1_555 G O3B ADP . B ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 F MG MG . B MG 500 1_555 G O1A ADP . B ADP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc10 F MG MG . B MG 500 1_555 H O2 PO4 . B PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc11 F MG MG . B MG 500 1_555 J O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc12 F MG MG . B MG 500 1_555 J O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZKJ _atom_sites.fract_transf_matrix[1][1] 0.013963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002487 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 500 500 MG MG . D 3 ADP A 1 501 501 ADP ADP . E 4 PO4 A 1 502 502 PO4 PO4 . F 2 MG B 1 500 500 MG MG . G 3 ADP B 1 501 501 ADP ADP . H 4 PO4 B 1 502 502 PO4 PO4 . I 5 HOH A 1 503 503 HOH HOH . I 5 HOH A 2 504 504 HOH HOH . I 5 HOH A 3 505 505 HOH HOH . I 5 HOH A 4 506 506 HOH HOH . I 5 HOH A 5 507 507 HOH HOH . I 5 HOH A 6 508 508 HOH HOH . I 5 HOH A 7 509 509 HOH HOH . I 5 HOH A 8 510 510 HOH HOH . I 5 HOH A 9 511 511 HOH HOH . I 5 HOH A 10 512 512 HOH HOH . I 5 HOH A 11 513 513 HOH HOH . I 5 HOH A 12 514 514 HOH HOH . I 5 HOH A 13 515 515 HOH HOH . I 5 HOH A 14 516 516 HOH HOH . I 5 HOH A 15 517 517 HOH HOH . I 5 HOH A 16 518 518 HOH HOH . I 5 HOH A 17 519 519 HOH HOH . I 5 HOH A 18 520 520 HOH HOH . I 5 HOH A 19 521 521 HOH HOH . I 5 HOH A 20 522 522 HOH HOH . I 5 HOH A 21 523 523 HOH HOH . I 5 HOH A 22 524 524 HOH HOH . I 5 HOH A 23 525 525 HOH HOH . I 5 HOH A 24 526 526 HOH HOH . I 5 HOH A 25 527 527 HOH HOH . I 5 HOH A 26 528 528 HOH HOH . I 5 HOH A 27 529 529 HOH HOH . I 5 HOH A 28 530 530 HOH HOH . I 5 HOH A 29 531 531 HOH HOH . I 5 HOH A 30 532 532 HOH HOH . I 5 HOH A 31 533 533 HOH HOH . I 5 HOH A 32 534 534 HOH HOH . I 5 HOH A 33 535 535 HOH HOH . I 5 HOH A 34 536 536 HOH HOH . I 5 HOH A 35 537 537 HOH HOH . I 5 HOH A 36 538 538 HOH HOH . I 5 HOH A 37 539 539 HOH HOH . I 5 HOH A 38 540 540 HOH HOH . I 5 HOH A 39 541 541 HOH HOH . I 5 HOH A 40 542 542 HOH HOH . I 5 HOH A 41 543 543 HOH HOH . I 5 HOH A 42 544 544 HOH HOH . I 5 HOH A 43 545 545 HOH HOH . I 5 HOH A 44 546 546 HOH HOH . I 5 HOH A 45 547 547 HOH HOH . I 5 HOH A 46 548 548 HOH HOH . I 5 HOH A 47 549 549 HOH HOH . I 5 HOH A 48 550 550 HOH HOH . I 5 HOH A 49 551 551 HOH HOH . I 5 HOH A 50 552 552 HOH HOH . I 5 HOH A 51 553 553 HOH HOH . I 5 HOH A 52 554 554 HOH HOH . I 5 HOH A 53 555 555 HOH HOH . I 5 HOH A 54 556 556 HOH HOH . I 5 HOH A 55 557 557 HOH HOH . I 5 HOH A 56 558 558 HOH HOH . I 5 HOH A 57 559 559 HOH HOH . I 5 HOH A 58 560 560 HOH HOH . I 5 HOH A 59 561 561 HOH HOH . I 5 HOH A 60 562 562 HOH HOH . I 5 HOH A 61 563 563 HOH HOH . I 5 HOH A 62 564 564 HOH HOH . I 5 HOH A 63 565 565 HOH HOH . I 5 HOH A 64 566 566 HOH HOH . I 5 HOH A 65 567 567 HOH HOH . I 5 HOH A 66 568 568 HOH HOH . I 5 HOH A 67 569 569 HOH HOH . I 5 HOH A 68 570 570 HOH HOH . I 5 HOH A 69 571 571 HOH HOH . I 5 HOH A 70 572 572 HOH HOH . I 5 HOH A 71 573 573 HOH HOH . I 5 HOH A 72 574 574 HOH HOH . I 5 HOH A 73 575 575 HOH HOH . I 5 HOH A 74 576 576 HOH HOH . I 5 HOH A 75 577 577 HOH HOH . I 5 HOH A 76 578 578 HOH HOH . I 5 HOH A 77 579 579 HOH HOH . I 5 HOH A 78 580 580 HOH HOH . I 5 HOH A 79 581 581 HOH HOH . I 5 HOH A 80 582 582 HOH HOH . I 5 HOH A 81 583 583 HOH HOH . I 5 HOH A 82 584 584 HOH HOH . I 5 HOH A 83 585 585 HOH HOH . I 5 HOH A 84 586 586 HOH HOH . I 5 HOH A 85 587 587 HOH HOH . I 5 HOH A 86 588 588 HOH HOH . I 5 HOH A 87 589 589 HOH HOH . I 5 HOH A 88 590 590 HOH HOH . I 5 HOH A 89 591 591 HOH HOH . I 5 HOH A 90 592 592 HOH HOH . I 5 HOH A 91 593 593 HOH HOH . I 5 HOH A 92 594 594 HOH HOH . I 5 HOH A 93 595 595 HOH HOH . I 5 HOH A 94 596 596 HOH HOH . I 5 HOH A 95 597 597 HOH HOH . I 5 HOH A 96 598 598 HOH HOH . I 5 HOH A 97 599 599 HOH HOH . I 5 HOH A 98 600 600 HOH HOH . I 5 HOH A 99 601 601 HOH HOH . I 5 HOH A 100 602 602 HOH HOH . J 5 HOH B 1 503 503 HOH HOH . J 5 HOH B 2 504 504 HOH HOH . J 5 HOH B 3 505 505 HOH HOH . J 5 HOH B 4 506 506 HOH HOH . J 5 HOH B 5 507 507 HOH HOH . J 5 HOH B 6 508 508 HOH HOH . J 5 HOH B 7 509 509 HOH HOH . J 5 HOH B 8 510 510 HOH HOH . J 5 HOH B 9 511 511 HOH HOH . J 5 HOH B 10 512 512 HOH HOH . J 5 HOH B 11 513 513 HOH HOH . J 5 HOH B 12 514 514 HOH HOH . J 5 HOH B 13 515 515 HOH HOH . J 5 HOH B 14 516 516 HOH HOH . J 5 HOH B 15 517 517 HOH HOH . J 5 HOH B 16 518 518 HOH HOH . J 5 HOH B 17 519 519 HOH HOH . J 5 HOH B 18 520 520 HOH HOH . J 5 HOH B 19 521 521 HOH HOH . J 5 HOH B 20 522 522 HOH HOH . J 5 HOH B 21 523 523 HOH HOH . J 5 HOH B 22 524 524 HOH HOH . J 5 HOH B 23 525 525 HOH HOH . J 5 HOH B 24 526 526 HOH HOH . J 5 HOH B 25 527 527 HOH HOH . J 5 HOH B 26 528 528 HOH HOH . J 5 HOH B 27 529 529 HOH HOH . J 5 HOH B 28 530 530 HOH HOH . J 5 HOH B 29 531 531 HOH HOH . J 5 HOH B 30 532 532 HOH HOH . J 5 HOH B 31 533 533 HOH HOH . J 5 HOH B 32 534 534 HOH HOH . J 5 HOH B 33 535 535 HOH HOH . J 5 HOH B 34 536 536 HOH HOH . J 5 HOH B 35 537 537 HOH HOH . J 5 HOH B 36 538 538 HOH HOH . J 5 HOH B 37 539 539 HOH HOH . J 5 HOH B 38 540 540 HOH HOH . J 5 HOH B 39 541 541 HOH HOH . J 5 HOH B 40 542 542 HOH HOH . J 5 HOH B 41 543 543 HOH HOH . J 5 HOH B 42 544 544 HOH HOH . J 5 HOH B 43 545 545 HOH HOH . J 5 HOH B 44 546 546 HOH HOH . J 5 HOH B 45 547 547 HOH HOH . J 5 HOH B 46 548 548 HOH HOH . J 5 HOH B 47 549 549 HOH HOH . J 5 HOH B 48 550 550 HOH HOH . J 5 HOH B 49 551 551 HOH HOH . J 5 HOH B 50 552 552 HOH HOH . J 5 HOH B 51 553 553 HOH HOH . J 5 HOH B 52 554 554 HOH HOH . J 5 HOH B 53 555 555 HOH HOH . J 5 HOH B 54 556 556 HOH HOH . J 5 HOH B 55 557 557 HOH HOH . J 5 HOH B 56 558 558 HOH HOH . J 5 HOH B 57 559 559 HOH HOH . J 5 HOH B 58 560 560 HOH HOH . J 5 HOH B 59 561 561 HOH HOH . J 5 HOH B 60 562 562 HOH HOH . J 5 HOH B 61 563 563 HOH HOH . J 5 HOH B 62 564 564 HOH HOH . J 5 HOH B 63 565 565 HOH HOH . J 5 HOH B 64 566 566 HOH HOH . J 5 HOH B 65 567 567 HOH HOH . J 5 HOH B 66 568 568 HOH HOH . J 5 HOH B 67 569 569 HOH HOH . J 5 HOH B 68 570 570 HOH HOH . J 5 HOH B 69 571 571 HOH HOH . J 5 HOH B 70 572 572 HOH HOH . J 5 HOH B 71 573 573 HOH HOH . J 5 HOH B 72 574 574 HOH HOH . J 5 HOH B 73 575 575 HOH HOH . J 5 HOH B 74 576 576 HOH HOH . J 5 HOH B 75 577 577 HOH HOH . J 5 HOH B 76 578 578 HOH HOH . J 5 HOH B 77 579 579 HOH HOH . J 5 HOH B 78 580 580 HOH HOH . J 5 HOH B 79 581 581 HOH HOH . J 5 HOH B 80 582 582 HOH HOH . J 5 HOH B 81 583 583 HOH HOH . J 5 HOH B 82 584 584 HOH HOH . J 5 HOH B 83 585 585 HOH HOH . J 5 HOH B 84 586 586 HOH HOH . J 5 HOH B 85 587 587 HOH HOH . J 5 HOH B 86 588 588 HOH HOH . J 5 HOH B 87 589 589 HOH HOH . J 5 HOH B 88 590 590 HOH HOH . J 5 HOH B 89 591 591 HOH HOH . J 5 HOH B 90 592 592 HOH HOH . J 5 HOH B 91 593 593 HOH HOH . J 5 HOH B 92 594 594 HOH HOH . J 5 HOH B 93 595 595 HOH HOH . J 5 HOH B 94 596 596 HOH HOH . J 5 HOH B 95 597 597 HOH HOH . J 5 HOH B 96 598 598 HOH HOH . J 5 HOH B 97 599 599 HOH HOH . J 5 HOH B 98 600 600 HOH HOH . J 5 HOH B 99 601 601 HOH HOH . J 5 HOH B 100 602 602 HOH HOH . J 5 HOH B 101 603 603 HOH HOH . J 5 HOH B 102 604 604 HOH HOH . J 5 HOH B 103 605 605 HOH HOH . J 5 HOH B 104 606 606 HOH HOH . J 5 HOH B 105 607 607 HOH HOH . J 5 HOH B 106 608 608 HOH HOH . J 5 HOH B 107 609 609 HOH HOH . J 5 HOH B 108 610 610 HOH HOH . J 5 HOH B 109 611 611 HOH HOH . J 5 HOH B 110 612 612 HOH HOH . J 5 HOH B 111 613 613 HOH HOH . J 5 HOH B 112 614 614 HOH HOH . J 5 HOH B 113 615 615 HOH HOH . J 5 HOH B 114 616 616 HOH HOH . J 5 HOH B 115 617 617 HOH HOH . J 5 HOH B 116 618 618 HOH HOH . J 5 HOH B 117 619 619 HOH HOH . J 5 HOH B 118 620 620 HOH HOH . J 5 HOH B 119 621 621 HOH HOH . J 5 HOH B 120 622 622 HOH HOH . J 5 HOH B 121 623 623 HOH HOH . J 5 HOH B 122 624 624 HOH HOH . J 5 HOH B 123 625 625 HOH HOH . J 5 HOH B 124 626 626 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.413 _atom_site.Cartn_y 6.925 _atom_site.Cartn_z 23.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #