data_2ZLC
#
_model_server_result.job_id            O0ZGAlXO4pna5BaSxj9p3g 
_model_server_result.datetime_utc      '2024-10-11 13:22:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zlc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2ZLC 
#
_exptl.entry_id    2ZLC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              416.636 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.06 
_cell.angle_gamma         90 
_cell.entry_id            2ZLC 
_cell.length_a            153.859 
_cell.length_b            41.998 
_cell.length_c            41.951 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZLC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H44 O3' 
_chem_comp.formula_weight    416.636 
_chem_comp.id                VDX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,25 DIHYDROXY VITAMIN D3' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 VDX sing 376 n n 
O2 HO2 VDX sing 377 n n 
O3 C25 VDX sing 378 n n 
O3 HO3 VDX sing 379 n n 
C1 C2 VDX sing 380 n n 
C1 C10 VDX sing 381 n n 
C1 O1 VDX sing 382 n n 
C1 H11 VDX sing 383 n n 
C2 C3 VDX sing 384 n n 
C2 H21 VDX sing 385 n n 
C2 H22 VDX sing 386 n n 
C3 C4 VDX sing 387 n n 
C3 H31 VDX sing 388 n n 
C4 C5 VDX sing 389 n n 
C4 H41 VDX sing 390 n n 
C4 H42 VDX sing 391 n n 
C5 C6 VDX doub 392 z n 
C5 C10 VDX sing 393 n n 
C6 C7 VDX sing 394 n n 
C6 H61 VDX sing 395 n n 
C7 C8 VDX doub 396 e n 
C7 H71 VDX sing 397 n n 
C8 C9 VDX sing 398 n n 
C8 C14 VDX sing 399 n n 
C9 C11 VDX sing 400 n n 
C9 H91 VDX sing 401 n n 
C9 H92 VDX sing 402 n n 
C10 C19 VDX doub 403 n n 
C11 C12 VDX sing 404 n n 
C11 H111 VDX sing 405 n n 
C11 H112 VDX sing 406 n n 
C12 C13 VDX sing 407 n n 
C12 H121 VDX sing 408 n n 
C12 H122 VDX sing 409 n n 
C13 C14 VDX sing 410 n n 
C13 C17 VDX sing 411 n n 
C13 C18 VDX sing 412 n n 
C14 C15 VDX sing 413 n n 
C14 H141 VDX sing 414 n n 
C15 C16 VDX sing 415 n n 
C15 H151 VDX sing 416 n n 
C15 H152 VDX sing 417 n n 
C16 C17 VDX sing 418 n n 
C16 H161 VDX sing 419 n n 
C16 H162 VDX sing 420 n n 
C17 C20 VDX sing 421 n n 
C17 H171 VDX sing 422 n n 
C18 H181 VDX sing 423 n n 
C18 H182 VDX sing 424 n n 
C18 H183 VDX sing 425 n n 
C19 H191 VDX sing 426 n n 
C19 H192 VDX sing 427 n n 
C20 C21 VDX sing 428 n n 
C20 C22 VDX sing 429 n n 
C20 H201 VDX sing 430 n n 
C21 H211 VDX sing 431 n n 
C21 H212 VDX sing 432 n n 
C21 H213 VDX sing 433 n n 
C22 C23 VDX sing 434 n n 
C22 H221 VDX sing 435 n n 
C22 H222 VDX sing 436 n n 
C23 C24 VDX sing 437 n n 
C23 H231 VDX sing 438 n n 
C23 H232 VDX sing 439 n n 
C24 C25 VDX sing 440 n n 
C24 H241 VDX sing 441 n n 
C24 H242 VDX sing 442 n n 
C25 C26 VDX sing 443 n n 
C25 C27 VDX sing 444 n n 
C26 H261 VDX sing 445 n n 
C26 H262 VDX sing 446 n n 
C26 H263 VDX sing 447 n n 
C27 H271 VDX sing 448 n n 
C27 H272 VDX sing 449 n n 
C27 H273 VDX sing 450 n n 
O1 HO1 VDX sing 451 n n 
#
_atom_sites.entry_id                     2ZLC 
_atom_sites.fract_transf_matrix[1][1]    0.006499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00069 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VDX A 1 500 500 VDX VDX . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 29 29 HOH HOH . 
D 4 HOH A 29 30 30 HOH HOH . 
D 4 HOH A 30 31 31 HOH HOH . 
D 4 HOH A 31 32 32 HOH HOH . 
D 4 HOH A 32 33 33 HOH HOH . 
D 4 HOH A 33 34 34 HOH HOH . 
D 4 HOH A 34 35 35 HOH HOH . 
D 4 HOH A 35 36 36 HOH HOH . 
D 4 HOH A 36 37 37 HOH HOH . 
D 4 HOH A 37 38 38 HOH HOH . 
D 4 HOH A 38 39 39 HOH HOH . 
D 4 HOH A 39 40 40 HOH HOH . 
D 4 HOH A 40 42 42 HOH HOH . 
D 4 HOH A 41 43 43 HOH HOH . 
D 4 HOH A 42 44 44 HOH HOH . 
D 4 HOH A 43 45 45 HOH HOH . 
D 4 HOH A 44 46 46 HOH HOH . 
D 4 HOH A 45 47 47 HOH HOH . 
D 4 HOH A 46 48 48 HOH HOH . 
D 4 HOH A 47 49 49 HOH HOH . 
D 4 HOH A 48 50 50 HOH HOH . 
D 4 HOH A 49 51 51 HOH HOH . 
D 4 HOH A 50 52 52 HOH HOH . 
D 4 HOH A 51 53 53 HOH HOH . 
D 4 HOH A 52 54 54 HOH HOH . 
D 4 HOH A 53 55 55 HOH HOH . 
D 4 HOH A 54 56 56 HOH HOH . 
D 4 HOH A 55 57 57 HOH HOH . 
D 4 HOH A 56 58 58 HOH HOH . 
D 4 HOH A 57 59 59 HOH HOH . 
D 4 HOH A 58 60 60 HOH HOH . 
D 4 HOH A 59 61 61 HOH HOH . 
D 4 HOH A 60 62 62 HOH HOH . 
D 4 HOH A 61 63 63 HOH HOH . 
D 4 HOH A 62 64 64 HOH HOH . 
D 4 HOH A 63 65 65 HOH HOH . 
D 4 HOH A 64 66 66 HOH HOH . 
D 4 HOH A 65 67 67 HOH HOH . 
D 4 HOH A 66 69 69 HOH HOH . 
D 4 HOH A 67 70 70 HOH HOH . 
D 4 HOH A 68 71 71 HOH HOH . 
D 4 HOH A 69 72 72 HOH HOH . 
D 4 HOH A 70 73 73 HOH HOH . 
D 4 HOH A 71 74 74 HOH HOH . 
D 4 HOH A 72 75 75 HOH HOH . 
D 4 HOH A 73 76 76 HOH HOH . 
D 4 HOH A 74 77 77 HOH HOH . 
D 4 HOH A 75 78 78 HOH HOH . 
D 4 HOH A 76 79 79 HOH HOH . 
D 4 HOH A 77 80 80 HOH HOH . 
D 4 HOH A 78 81 81 HOH HOH . 
E 4 HOH C 1 10 10 HOH HOH . 
E 4 HOH C 2 41 41 HOH HOH . 
E 4 HOH C 3 82 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 VDX . . . C 3 16.262 9.019 19.387 1 30.58 ? O2 VDX 500 A 1 
HETATM 2 O O3 VDX . . . C 3 9.372 -1.554 28.086 1 34.32 ? O3 VDX 500 A 1 
HETATM 3 C C1 VDX . . . C 3 14.703 6.494 19.066 1 25.74 ? C1 VDX 500 A 1 
HETATM 4 C C2 VDX . . . C 3 14.377 7.842 18.363 1 30.56 ? C2 VDX 500 A 1 
HETATM 5 C C3 VDX . . . C 3 14.844 9.046 19.253 1 25.37 ? C3 VDX 500 A 1 
HETATM 6 C C4 VDX . . . C 3 14.201 8.996 20.678 1 29.92 ? C4 VDX 500 A 1 
HETATM 7 C C5 VDX . . . C 3 14.307 7.575 21.313 1 30.79 ? C5 VDX 500 A 1 
HETATM 8 C C6 VDX . . . C 3 14.691 7.585 22.678 1 31.23 ? C6 VDX 500 A 1 
HETATM 9 C C7 VDX . . . C 3 14.871 6.477 23.51 1 24.51 ? C7 VDX 500 A 1 
HETATM 10 C C8 VDX . . . C 3 14.669 6.401 24.888 1 27.68 ? C8 VDX 500 A 1 
HETATM 11 C C9 VDX . . . C 3 14.187 7.604 25.775 1 30.95 ? C9 VDX 500 A 1 
HETATM 12 C C10 VDX . . . C 3 14.02 6.441 20.464 1 31.43 ? C10 VDX 500 A 1 
HETATM 13 C C11 VDX . . . C 3 12.969 7.217 26.668 1 30.75 ? C11 VDX 500 A 1 
HETATM 14 C C12 VDX . . . C 3 13.085 5.79 27.321 1 31.39 ? C12 VDX 500 A 1 
HETATM 15 C C13 VDX . . . C 3 13.498 4.642 26.336 1 30.01 ? C13 VDX 500 A 1 
HETATM 16 C C14 VDX . . . C 3 14.864 5.083 25.695 1 27.73 ? C14 VDX 500 A 1 
HETATM 17 C C15 VDX . . . C 3 15.369 3.788 24.955 1 28.56 ? C15 VDX 500 A 1 
HETATM 18 C C16 VDX . . . C 3 14.801 2.658 25.845 1 27.18 ? C16 VDX 500 A 1 
HETATM 19 C C17 VDX . . . C 3 14.094 3.374 27.014 1 31.95 ? C17 VDX 500 A 1 
HETATM 20 C C18 VDX . . . C 3 12.323 4.42 25.302 1 27.21 ? C18 VDX 500 A 1 
HETATM 21 C C19 VDX . . . C 3 13.177 5.366 20.809 1 33.56 ? C19 VDX 500 A 1 
HETATM 22 C C20 VDX . . . C 3 13.102 2.414 27.824 1 29.59 ? C20 VDX 500 A 1 
HETATM 23 C C21 VDX . . . C 3 13.864 1.47 28.772 1 31.95 ? C21 VDX 500 A 1 
HETATM 24 C C22 VDX . . . C 3 12.171 1.487 26.958 1 29.44 ? C22 VDX 500 A 1 
HETATM 25 C C23 VDX . . . C 3 10.782 1.264 27.595 1 34.65 ? C23 VDX 500 A 1 
HETATM 26 C C24 VDX . . . C 3 9.849 0.408 26.689 1 38.8 ? C24 VDX 500 A 1 
HETATM 27 C C25 VDX . . . C 3 8.756 -0.459 27.381 1 39.4 ? C25 VDX 500 A 1 
HETATM 28 C C26 VDX . . . C 3 7.964 0.384 28.382 1 37.12 ? C26 VDX 500 A 1 
HETATM 29 C C27 VDX . . . C 3 7.773 -1.03 26.351 1 36.4 ? C27 VDX 500 A 1 
HETATM 30 O O1 VDX . . . C 3 14.314 5.423 18.19 1 39.9 ? O1 VDX 500 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#