data_2ZLW # _model_server_result.job_id VNNU9m7kDWgb2VPBo8kRTg _model_server_result.datetime_utc '2025-03-06 04:14:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zlw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":142}' # _entry.id 2ZLW # _exptl.entry_id 2ZLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.28 _cell.angle_gamma 90 _cell.entry_id 2ZLW _cell.length_a 108.272 _cell.length_b 63.265 _cell.length_c 108.149 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2ZLW _atom_sites.fract_transf_matrix[1][1] 0.009236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003597 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 142 HEM HEM . F 3 HEM B 1 147 147 HEM HEM . G 3 HEM C 1 142 142 HEM HEM . H 3 HEM D 1 147 147 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 -5.24 -10.497 45.124 1 24.73 ? CHA HEM 142 A 1 HETATM 2 C CHB HEM . . . E 3 -2.528 -11.954 41.453 1 23.91 ? CHB HEM 142 A 1 HETATM 3 C CHC HEM . . . E 3 -4.013 -8.176 38.816 1 23.36 ? CHC HEM 142 A 1 HETATM 4 C CHD HEM . . . E 3 -5.903 -6.231 42.83 1 24.13 ? CHD HEM 142 A 1 HETATM 5 C C1A HEM . . . E 3 -4.387 -11.222 44.326 1 25.17 ? C1A HEM 142 A 1 HETATM 6 C C2A HEM . . . E 3 -3.755 -12.463 44.701 1 25.48 ? C2A HEM 142 A 1 HETATM 7 C C3A HEM . . . E 3 -2.891 -12.822 43.724 1 25.23 ? C3A HEM 142 A 1 HETATM 8 C C4A HEM . . . E 3 -3.019 -11.797 42.711 1 24.71 ? C4A HEM 142 A 1 HETATM 9 C CMA HEM . . . E 3 -1.967 -14.053 43.638 1 25.5 ? CMA HEM 142 A 1 HETATM 10 C CAA HEM . . . E 3 -3.98 -13.135 46.035 1 26.19 ? CAA HEM 142 A 1 HETATM 11 C CBA HEM . . . E 3 -2.834 -12.721 46.952 1 27.84 ? CBA HEM 142 A 1 HETATM 12 C CGA HEM . . . E 3 -3.136 -13.211 48.338 1 27.8 ? CGA HEM 142 A 1 HETATM 13 O O1A HEM . . . E 3 -3.144 -14.451 48.554 1 27.53 ? O1A HEM 142 A 1 HETATM 14 O O2A HEM . . . E 3 -3.374 -12.333 49.197 1 28.32 ? O2A HEM 142 A 1 HETATM 15 C C1B HEM . . . E 3 -2.851 -11.139 40.41 1 23.02 ? C1B HEM 142 A 1 HETATM 16 C C2B HEM . . . E 3 -2.473 -11.411 39.039 1 22.3 ? C2B HEM 142 A 1 HETATM 17 C C3B HEM . . . E 3 -2.798 -10.328 38.314 1 21.83 ? C3B HEM 142 A 1 HETATM 18 C C4B HEM . . . E 3 -3.458 -9.384 39.202 1 22.64 ? C4B HEM 142 A 1 HETATM 19 C CMB HEM . . . E 3 -1.836 -12.711 38.517 1 21.65 ? CMB HEM 142 A 1 HETATM 20 C CAB HEM . . . E 3 -2.468 -10.126 36.911 1 19.95 ? CAB HEM 142 A 1 HETATM 21 C CBB HEM . . . E 3 -1.271 -9.602 36.59 1 20.09 ? CBB HEM 142 A 1 HETATM 22 C C1C HEM . . . E 3 -4.603 -7.277 39.703 1 23.86 ? C1C HEM 142 A 1 HETATM 23 C C2C HEM . . . E 3 -5.12 -5.973 39.34 1 23.32 ? C2C HEM 142 A 1 HETATM 24 C C3C HEM . . . E 3 -5.524 -5.367 40.488 1 23.28 ? C3C HEM 142 A 1 HETATM 25 C C4C HEM . . . E 3 -5.357 -6.334 41.559 1 23.6 ? C4C HEM 142 A 1 HETATM 26 C CMC HEM . . . E 3 -5.186 -5.456 37.898 1 22.75 ? CMC HEM 142 A 1 HETATM 27 C CAC HEM . . . E 3 -5.912 -3.962 40.722 1 23.92 ? CAC HEM 142 A 1 HETATM 28 C CBC HEM . . . E 3 -6.433 -3.103 39.755 1 24.56 ? CBC HEM 142 A 1 HETATM 29 C C1D HEM . . . E 3 -5.961 -7.237 43.797 1 24.31 ? C1D HEM 142 A 1 HETATM 30 C C2D HEM . . . E 3 -6.474 -7.07 45.154 1 24.56 ? C2D HEM 142 A 1 HETATM 31 C C3D HEM . . . E 3 -6.208 -8.316 45.818 1 24.65 ? C3D HEM 142 A 1 HETATM 32 C C4D HEM . . . E 3 -5.59 -9.178 44.857 1 24.98 ? C4D HEM 142 A 1 HETATM 33 C CMD HEM . . . E 3 -7.216 -5.86 45.757 1 25.26 ? CMD HEM 142 A 1 HETATM 34 C CAD HEM . . . E 3 -6.521 -8.687 47.251 1 24.81 ? CAD HEM 142 A 1 HETATM 35 C CBD HEM . . . E 3 -5.255 -8.382 48.051 1 24.95 ? CBD HEM 142 A 1 HETATM 36 C CGD HEM . . . E 3 -5.604 -8.3 49.507 1 24.51 ? CGD HEM 142 A 1 HETATM 37 O O1D HEM . . . E 3 -6.563 -7.558 49.83 1 25.33 ? O1D HEM 142 A 1 HETATM 38 O O2D HEM . . . E 3 -4.935 -8.973 50.315 1 23.89 ? O2D HEM 142 A 1 HETATM 39 N NA HEM . . . E 3 -3.902 -10.802 43.088 1 24.5 ? NA HEM 142 A 1 HETATM 40 N NB HEM . . . E 3 -3.459 -9.89 40.515 1 23.29 ? NB HEM 142 A 1 HETATM 41 N NC HEM . . . E 3 -4.747 -7.485 41.084 1 23.98 ? NC HEM 142 A 1 HETATM 42 N ND HEM . . . E 3 -5.405 -8.504 43.65 1 24.29 ? ND HEM 142 A 1 HETATM 43 FE FE HEM . . . E 3 -4.132 -9.079 42.142 1 23.59 ? FE HEM 142 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #