data_2ZLW
#
_model_server_result.job_id            n-8Y_rD1NtsxNTNWKerAmg 
_model_server_result.datetime_utc      '2025-03-06 04:29:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zlw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":147}' 
#
_entry.id    2ZLW 
#
_exptl.entry_id    2ZLW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.28 
_cell.angle_gamma         90 
_cell.entry_id            2ZLW 
_cell.length_a            108.272 
_cell.length_b            63.265 
_cell.length_c            108.149 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZLW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2ZLW 
_atom_sites.fract_transf_matrix[1][1]    0.009236 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003597 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 142 142 HEM HEM . 
F 3 HEM B 1 147 147 HEM HEM . 
G 3 HEM C 1 142 142 HEM HEM . 
H 3 HEM D 1 147 147 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 3 2.905 10.201 10.048 1 23.64 ? CHA HEM 147 B 1 
HETATM 2 C CHB HEM . . . F 3 3.572 11.731 14.639 1 21.42 ? CHB HEM 147 B 1 
HETATM 3 C CHC HEM . . . F 3 1.152 7.78 16.11 1 22.69 ? CHC HEM 147 B 1 
HETATM 4 C CHD HEM . . . F 3 0.532 6.177 11.463 1 22.76 ? CHD HEM 147 B 1 
HETATM 5 C C1A HEM . . . F 3 3.275 10.932 11.174 1 23.82 ? C1A HEM 147 B 1 
HETATM 6 C C2A HEM . . . F 3 4.149 12.098 11.141 1 24.2 ? C2A HEM 147 B 1 
HETATM 7 C C3A HEM . . . F 3 4.394 12.489 12.408 1 22.69 ? C3A HEM 147 B 1 
HETATM 8 C C4A HEM . . . F 3 3.637 11.605 13.27 1 22.72 ? C4A HEM 147 B 1 
HETATM 9 C CMA HEM . . . F 3 5.303 13.642 12.847 1 22.07 ? CMA HEM 147 B 1 
HETATM 10 C CAA HEM . . . F 3 4.708 12.761 9.864 1 25.52 ? CAA HEM 147 B 1 
HETATM 11 C CBA HEM . . . F 3 3.836 13.983 9.513 1 26.67 ? CBA HEM 147 B 1 
HETATM 12 C CGA HEM . . . F 3 4.493 14.914 8.498 1 27.93 ? CGA HEM 147 B 1 
HETATM 13 O O1A HEM . . . F 3 4.943 14.421 7.42 1 28.5 ? O1A HEM 147 B 1 
HETATM 14 O O2A HEM . . . F 3 4.563 16.149 8.766 1 27.35 ? O2A HEM 147 B 1 
HETATM 15 C C1B HEM . . . F 3 2.968 10.8 15.447 1 22.15 ? C1B HEM 147 B 1 
HETATM 16 C C2B HEM . . . F 3 2.951 10.843 16.91 1 21.77 ? C2B HEM 147 B 1 
HETATM 17 C C3B HEM . . . F 3 2.294 9.743 17.335 1 22.37 ? C3B HEM 147 B 1 
HETATM 18 C C4B HEM . . . F 3 1.872 8.971 16.132 1 22.83 ? C4B HEM 147 B 1 
HETATM 19 C CMB HEM . . . F 3 3.604 11.901 17.801 1 21.08 ? CMB HEM 147 B 1 
HETATM 20 C CAB HEM . . . F 3 2.065 9.356 18.741 1 22.24 ? CAB HEM 147 B 1 
HETATM 21 C CBB HEM . . . F 3 2.085 10.192 19.83 1 22.17 ? CBB HEM 147 B 1 
HETATM 22 C C1C HEM . . . F 3 0.821 6.992 14.997 1 23.75 ? C1C HEM 147 B 1 
HETATM 23 C C2C HEM . . . F 3 0.293 5.642 15.061 1 23.31 ? C2C HEM 147 B 1 
HETATM 24 C C3C HEM . . . F 3 0.117 5.185 13.787 1 23.44 ? C3C HEM 147 B 1 
HETATM 25 C C4C HEM . . . F 3 0.546 6.238 12.867 1 23.93 ? C4C HEM 147 B 1 
HETATM 26 C CMC HEM . . . F 3 0.05 4.876 16.348 1 21.92 ? CMC HEM 147 B 1 
HETATM 27 C CAC HEM . . . F 3 -0.301 3.834 13.392 1 23.88 ? CAC HEM 147 B 1 
HETATM 28 C CBC HEM . . . F 3 -1.524 3.589 12.832 1 24.26 ? CBC HEM 147 B 1 
HETATM 29 C C1D HEM . . . F 3 1.135 7.111 10.61 1 22.62 ? C1D HEM 147 B 1 
HETATM 30 C C2D HEM . . . F 3 1.26 7.083 9.154 1 22.49 ? C2D HEM 147 B 1 
HETATM 31 C C3D HEM . . . F 3 2.013 8.249 8.763 1 23.06 ? C3D HEM 147 B 1 
HETATM 32 C C4D HEM . . . F 3 2.263 8.968 9.987 1 23.05 ? C4D HEM 147 B 1 
HETATM 33 C CMD HEM . . . F 3 0.67 6.08 8.157 1 22.48 ? CMD HEM 147 B 1 
HETATM 34 C CAD HEM . . . F 3 2.53 8.603 7.35 1 24.4 ? CAD HEM 147 B 1 
HETATM 35 C CBD HEM . . . F 3 3.891 7.938 7.146 1 26.63 ? CBD HEM 147 B 1 
HETATM 36 C CGD HEM . . . F 3 4.309 7.789 5.686 1 28.08 ? CGD HEM 147 B 1 
HETATM 37 O O1D HEM . . . F 3 3.571 7.143 4.875 1 28.5 ? O1D HEM 147 B 1 
HETATM 38 O O2D HEM . . . F 3 5.41 8.311 5.34 1 28.53 ? O2D HEM 147 B 1 
HETATM 39 N NA HEM . . . F 3 2.989 10.621 12.502 1 23.59 ? NA HEM 147 B 1 
HETATM 40 N NB HEM . . . F 3 2.311 9.638 14.984 1 23.71 ? NB HEM 147 B 1 
HETATM 41 N NC HEM . . . F 3 1.004 7.323 13.638 1 24.06 ? NC HEM 147 B 1 
HETATM 42 N ND HEM . . . F 3 1.75 8.264 11.078 1 23.27 ? ND HEM 147 B 1 
HETATM 43 FE FE HEM . . . F 3 2.008 8.943 13.028 1 24.53 ? FE HEM 147 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#