data_2ZMB # _model_server_result.job_id zlpLCQMngHXrmxc8G4DQeQ _model_server_result.datetime_utc '2024-11-23 16:53:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":690}' # _entry.id 2ZMB # _exptl.entry_id 2ZMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.99 _cell.angle_gamma 90 _cell.entry_id 2ZMB _cell.length_a 63.52 _cell.length_b 50.402 _cell.length_c 66.289 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BGC C1 O1 . O4 HO4 . sing 4 ? 2 5 3 BGC BGC C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 BGC NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 BGC BGC C1 O1 . O4 HO4 . sing 9 ? 4 5 4 MAN BGC C1 O1 . O4 HO4 . sing 10 ? 4 6 5 MAN MAN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n B BGC 3 B 3 BGC B 3 MAN 2 n B MAN 4 B 4 MAN B 4 MAN 2 n B BGC 5 B 5 BGC B 5 MAN 3 n C NAG 1 C 1 NAG B 6 NAG 3 n C NAG 2 C 2 NAG B 7 NAG 4 n D NAG 1 D 1 NAG B 8 NAG 4 n D NAG 2 D 2 NAG B 9 NAG 4 n D BGC 3 D 3 BGC B 10 MAN 4 n D BGC 4 D 4 BGC B 11 MAN 4 n D MAN 5 D 5 MAN B 12 MAN 4 n D MAN 6 D 6 MAN B 13 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale2 A ND2 ASN 135 A ASN 476 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 B O4 BGC . B BGC 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 B O6 BGC . B BGC 3 1_555 B C1 BGC . B BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BGC . D BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale10 D O4 BGC . D BGC 3 1_555 D C1 BGC . D BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale11 D O4 BGC . D BGC 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale12 D O4 MAN . D MAN 5 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? metalc ? metalc1 A OD1 ASP 54 A ASP 395 1_555 E FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OH TYR 92 A TYR 433 1_555 E FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A OH TYR 185 A TYR 526 1_555 E FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc4 A NE2 HIS 247 A HIS 588 1_555 H ZN ZN . A ZN 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 A NE2 HIS 254 A HIS 595 1_555 E FE FE . A FE 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc6 A OE2 GLU 318 A GLU 659 1_555 G ZN ZN . A ZN 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 E FE FE . A FE 687 1_555 F O1 CO3 . A CO3 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc8 E FE FE . A FE 687 1_555 F O2 CO3 . A CO3 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZMB _atom_sites.fract_transf_matrix[1][1] 0.015743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005112 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FE A 1 687 1 FE FE . F 6 CO3 A 1 688 2 CO3 CO3 . G 7 ZN A 1 689 3 ZN ZN . H 7 ZN A 1 690 4 ZN ZN . I 8 SO4 A 1 691 5 SO4 SO4 . J 9 PXB A 1 692 1 PXB MOL . K 10 HOH A 1 693 1 HOH HOH . K 10 HOH A 2 694 2 HOH HOH . K 10 HOH A 3 695 3 HOH HOH . K 10 HOH A 4 696 4 HOH HOH . K 10 HOH A 5 697 5 HOH HOH . K 10 HOH A 6 698 6 HOH HOH . K 10 HOH A 7 699 7 HOH HOH . K 10 HOH A 8 700 8 HOH HOH . K 10 HOH A 9 701 9 HOH HOH . K 10 HOH A 10 702 10 HOH HOH . K 10 HOH A 11 703 11 HOH HOH . K 10 HOH A 12 704 12 HOH HOH . K 10 HOH A 13 705 13 HOH HOH . K 10 HOH A 14 706 14 HOH HOH . K 10 HOH A 15 707 15 HOH HOH . K 10 HOH A 16 708 16 HOH HOH . K 10 HOH A 17 709 17 HOH HOH . K 10 HOH A 18 710 18 HOH HOH . K 10 HOH A 19 711 19 HOH HOH . K 10 HOH A 20 712 20 HOH HOH . K 10 HOH A 21 713 21 HOH HOH . K 10 HOH A 22 714 22 HOH HOH . K 10 HOH A 23 715 23 HOH HOH . K 10 HOH A 24 716 24 HOH HOH . K 10 HOH A 25 717 25 HOH HOH . K 10 HOH A 26 718 26 HOH HOH . K 10 HOH A 27 719 27 HOH HOH . K 10 HOH A 28 720 28 HOH HOH . K 10 HOH A 29 721 29 HOH HOH . K 10 HOH A 30 722 30 HOH HOH . K 10 HOH A 31 723 31 HOH HOH . K 10 HOH A 32 724 32 HOH HOH . K 10 HOH A 33 725 33 HOH HOH . K 10 HOH A 34 726 34 HOH HOH . K 10 HOH A 35 727 35 HOH HOH . K 10 HOH A 36 728 36 HOH HOH . K 10 HOH A 37 729 37 HOH HOH . K 10 HOH A 38 730 38 HOH HOH . K 10 HOH A 39 731 39 HOH HOH . K 10 HOH A 40 732 40 HOH HOH . K 10 HOH A 41 733 41 HOH HOH . K 10 HOH A 42 734 42 HOH HOH . K 10 HOH A 43 735 43 HOH HOH . K 10 HOH A 44 736 44 HOH HOH . K 10 HOH A 45 737 45 HOH HOH . K 10 HOH A 46 738 46 HOH HOH . K 10 HOH A 47 739 47 HOH HOH . K 10 HOH A 48 740 48 HOH HOH . K 10 HOH A 49 741 49 HOH HOH . K 10 HOH A 50 742 50 HOH HOH . K 10 HOH A 51 743 51 HOH HOH . K 10 HOH A 52 744 52 HOH HOH . K 10 HOH A 53 745 53 HOH HOH . K 10 HOH A 54 746 54 HOH HOH . K 10 HOH A 55 747 55 HOH HOH . K 10 HOH A 56 748 56 HOH HOH . K 10 HOH A 57 749 57 HOH HOH . K 10 HOH A 58 750 58 HOH HOH . K 10 HOH A 59 751 59 HOH HOH . K 10 HOH A 60 752 60 HOH HOH . K 10 HOH A 61 753 61 HOH HOH . K 10 HOH A 62 754 62 HOH HOH . K 10 HOH A 63 755 63 HOH HOH . K 10 HOH A 64 756 64 HOH HOH . K 10 HOH A 65 757 65 HOH HOH . K 10 HOH A 66 758 66 HOH HOH . K 10 HOH A 67 759 67 HOH HOH . K 10 HOH A 68 760 68 HOH HOH . K 10 HOH A 69 761 69 HOH HOH . K 10 HOH A 70 762 70 HOH HOH . K 10 HOH A 71 763 71 HOH HOH . K 10 HOH A 72 764 72 HOH HOH . K 10 HOH A 73 765 73 HOH HOH . K 10 HOH A 74 766 74 HOH HOH . K 10 HOH A 75 767 75 HOH HOH . K 10 HOH A 76 768 76 HOH HOH . K 10 HOH A 77 769 77 HOH HOH . K 10 HOH A 78 770 78 HOH HOH . K 10 HOH A 79 771 79 HOH HOH . K 10 HOH A 80 772 80 HOH HOH . K 10 HOH A 81 773 81 HOH HOH . K 10 HOH A 82 774 82 HOH HOH . K 10 HOH A 83 775 83 HOH HOH . K 10 HOH A 84 776 84 HOH HOH . K 10 HOH A 85 777 85 HOH HOH . K 10 HOH A 86 778 86 HOH HOH . K 10 HOH A 87 779 87 HOH HOH . K 10 HOH A 88 780 88 HOH HOH . K 10 HOH A 89 781 89 HOH HOH . K 10 HOH A 90 782 90 HOH HOH . K 10 HOH A 91 783 91 HOH HOH . K 10 HOH A 92 784 92 HOH HOH . K 10 HOH A 93 785 93 HOH HOH . K 10 HOH A 94 786 94 HOH HOH . K 10 HOH A 95 787 95 HOH HOH . K 10 HOH A 96 788 96 HOH HOH . K 10 HOH A 97 789 97 HOH HOH . K 10 HOH A 98 790 98 HOH HOH . K 10 HOH A 99 791 99 HOH HOH . K 10 HOH A 100 792 100 HOH HOH . K 10 HOH A 101 793 101 HOH HOH . K 10 HOH A 102 794 102 HOH HOH . K 10 HOH A 103 795 103 HOH HOH . K 10 HOH A 104 796 104 HOH HOH . K 10 HOH A 105 797 105 HOH HOH . K 10 HOH A 106 798 106 HOH HOH . K 10 HOH A 107 799 107 HOH HOH . K 10 HOH A 108 800 108 HOH HOH . K 10 HOH A 109 801 109 HOH HOH . K 10 HOH A 110 802 110 HOH HOH . K 10 HOH A 111 803 111 HOH HOH . K 10 HOH A 112 804 112 HOH HOH . K 10 HOH A 113 805 113 HOH HOH . K 10 HOH A 114 806 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 3.121 _atom_site.Cartn_y 10.651 _atom_site.Cartn_z 7.578 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 690 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #