data_2ZMF # _model_server_result.job_id zy6njxn6YqLWn8FB-8bfnA _model_server_result.datetime_utc '2024-10-11 02:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2ZMF # _exptl.entry_id 2ZMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZMF _cell.length_a 74.506 _cell.length_b 74.506 _cell.length_c 146.524 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 36 A ILE 274 1_555 A N MSE 37 A MSE 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 37 A MSE 275 1_555 A N ILE 38 A ILE 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C CYS 131 A CYS 369 1_555 A N MSE 132 A MSE 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 A C MSE 132 A MSE 370 1_555 A N PRO 133 A PRO 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C GLN 145 A GLN 383 1_555 A N MSE 146 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 146 A MSE 384 1_555 A N VAL 147 A VAL 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 A C LYS 164 A LYS 402 1_555 A N MSE 165 A MSE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 165 A MSE 403 1_555 A N PHE 166 A PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale9 A C ASN 178 A ASN 416 1_555 A N MSE 179 A MSE 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 179 A MSE 417 1_555 A N TYR 180 A TYR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 B C ILE 36 B ILE 274 1_555 B N MSE 37 B MSE 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 B C MSE 37 B MSE 275 1_555 B N ILE 38 B ILE 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale13 B C CYS 131 B CYS 369 1_555 B N MSE 132 B MSE 370 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C CYS 131 B CYS 369 1_555 B N MSE 132 B MSE 370 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.342 ? covale ? covale15 B C MSE 132 B MSE 370 1_555 B N PRO 133 B PRO 371 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 132 B MSE 370 1_555 B N PRO 133 B PRO 371 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 B C GLN 145 B GLN 383 1_555 B N MSE 146 B MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 B C MSE 146 B MSE 384 1_555 B N VAL 147 B VAL 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C LYS 164 B LYS 402 1_555 B N MSE 165 B MSE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale20 B C MSE 165 B MSE 403 1_555 B N PHE 166 B PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale21 B C ASN 178 B ASN 416 1_555 B N MSE 179 B MSE 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C MSE 179 B MSE 417 1_555 B N TYR 180 B TYR 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # _atom_sites.entry_id 2ZMF _atom_sites.fract_transf_matrix[1][1] 0.013422 _atom_sites.fract_transf_matrix[1][2] 0.007749 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 2001 2001 CMP CMP . D 2 CMP B 1 2001 2001 CMP CMP . E 3 HOH A 1 2002 2002 HOH HOH . E 3 HOH A 2 2003 2003 HOH HOH . E 3 HOH A 3 2004 2004 HOH HOH . E 3 HOH A 4 2005 2005 HOH HOH . E 3 HOH A 5 2006 2006 HOH HOH . E 3 HOH A 6 2007 2007 HOH HOH . E 3 HOH A 7 2008 2008 HOH HOH . E 3 HOH A 8 2009 2009 HOH HOH . E 3 HOH A 9 2010 2010 HOH HOH . E 3 HOH A 10 2011 2011 HOH HOH . E 3 HOH A 11 2012 2012 HOH HOH . E 3 HOH A 12 2013 2013 HOH HOH . E 3 HOH A 13 2014 2014 HOH HOH . E 3 HOH A 14 2015 2015 HOH HOH . E 3 HOH A 15 2016 2016 HOH HOH . E 3 HOH A 16 2017 2017 HOH HOH . E 3 HOH A 17 2018 2018 HOH HOH . E 3 HOH A 18 2019 2019 HOH HOH . E 3 HOH A 19 2020 2020 HOH HOH . E 3 HOH A 20 2021 2021 HOH HOH . E 3 HOH A 21 2022 2022 HOH HOH . E 3 HOH A 22 2023 2023 HOH HOH . E 3 HOH A 23 2024 2024 HOH HOH . E 3 HOH A 24 2025 2025 HOH HOH . E 3 HOH A 25 2026 2026 HOH HOH . E 3 HOH A 26 2027 2027 HOH HOH . E 3 HOH A 27 2028 2028 HOH HOH . E 3 HOH A 28 2029 2029 HOH HOH . E 3 HOH A 29 2030 2030 HOH HOH . E 3 HOH A 30 2031 2031 HOH HOH . E 3 HOH A 31 2032 2032 HOH HOH . E 3 HOH A 32 2033 2033 HOH HOH . E 3 HOH A 33 2034 2034 HOH HOH . E 3 HOH A 34 2035 2035 HOH HOH . E 3 HOH A 35 2036 2036 HOH HOH . E 3 HOH A 36 2037 2037 HOH HOH . E 3 HOH A 37 2038 2038 HOH HOH . E 3 HOH A 38 2039 2039 HOH HOH . E 3 HOH A 39 2040 2040 HOH HOH . E 3 HOH A 40 2041 2041 HOH HOH . E 3 HOH A 41 2042 2042 HOH HOH . E 3 HOH A 42 2043 2043 HOH HOH . E 3 HOH A 43 2044 2044 HOH HOH . E 3 HOH A 44 2045 2045 HOH HOH . E 3 HOH A 45 2046 2046 HOH HOH . E 3 HOH A 46 2047 2047 HOH HOH . E 3 HOH A 47 2048 2048 HOH HOH . E 3 HOH A 48 2049 2049 HOH HOH . E 3 HOH A 49 2050 2050 HOH HOH . E 3 HOH A 50 2051 2051 HOH HOH . E 3 HOH A 51 2052 2052 HOH HOH . E 3 HOH A 52 2053 2053 HOH HOH . E 3 HOH A 53 2054 2054 HOH HOH . E 3 HOH A 54 2055 2055 HOH HOH . E 3 HOH A 55 2056 2056 HOH HOH . E 3 HOH A 56 2057 2057 HOH HOH . E 3 HOH A 57 2058 2058 HOH HOH . E 3 HOH A 58 2059 2059 HOH HOH . E 3 HOH A 59 2060 2060 HOH HOH . E 3 HOH A 60 2061 2061 HOH HOH . E 3 HOH A 61 2062 2062 HOH HOH . E 3 HOH A 62 2063 2063 HOH HOH . E 3 HOH A 63 2064 2064 HOH HOH . E 3 HOH A 64 2065 2065 HOH HOH . E 3 HOH A 65 2066 2066 HOH HOH . E 3 HOH A 66 2067 2067 HOH HOH . E 3 HOH A 67 2068 2068 HOH HOH . E 3 HOH A 68 2069 2069 HOH HOH . E 3 HOH A 69 2070 2070 HOH HOH . E 3 HOH A 70 2071 2071 HOH HOH . E 3 HOH A 71 2072 2072 HOH HOH . E 3 HOH A 72 2073 2073 HOH HOH . E 3 HOH A 73 2074 2074 HOH HOH . E 3 HOH A 74 2075 2075 HOH HOH . E 3 HOH A 75 2076 2076 HOH HOH . E 3 HOH A 76 2077 2077 HOH HOH . E 3 HOH A 77 2078 2078 HOH HOH . E 3 HOH A 78 2079 2079 HOH HOH . E 3 HOH A 79 2080 2080 HOH HOH . E 3 HOH A 80 2081 2081 HOH HOH . E 3 HOH A 81 2082 2082 HOH HOH . E 3 HOH A 82 2083 2083 HOH HOH . E 3 HOH A 83 2084 2084 HOH HOH . E 3 HOH A 84 2085 2085 HOH HOH . E 3 HOH A 85 2086 2086 HOH HOH . E 3 HOH A 86 2087 2087 HOH HOH . E 3 HOH A 87 2088 2088 HOH HOH . E 3 HOH A 88 2089 2089 HOH HOH . F 3 HOH B 1 2002 2002 HOH HOH . F 3 HOH B 2 2003 2003 HOH HOH . F 3 HOH B 3 2004 2004 HOH HOH . F 3 HOH B 4 2005 2005 HOH HOH . F 3 HOH B 5 2006 2006 HOH HOH . F 3 HOH B 6 2007 2007 HOH HOH . F 3 HOH B 7 2008 2008 HOH HOH . F 3 HOH B 8 2009 2009 HOH HOH . F 3 HOH B 9 2010 2010 HOH HOH . F 3 HOH B 10 2011 2011 HOH HOH . F 3 HOH B 11 2012 2012 HOH HOH . F 3 HOH B 12 2013 2013 HOH HOH . F 3 HOH B 13 2014 2014 HOH HOH . F 3 HOH B 14 2015 2015 HOH HOH . F 3 HOH B 15 2016 2016 HOH HOH . F 3 HOH B 16 2017 2017 HOH HOH . F 3 HOH B 17 2018 2018 HOH HOH . F 3 HOH B 18 2019 2019 HOH HOH . F 3 HOH B 19 2020 2020 HOH HOH . F 3 HOH B 20 2021 2021 HOH HOH . F 3 HOH B 21 2022 2022 HOH HOH . F 3 HOH B 22 2023 2023 HOH HOH . F 3 HOH B 23 2024 2024 HOH HOH . F 3 HOH B 24 2025 2025 HOH HOH . F 3 HOH B 25 2026 2026 HOH HOH . F 3 HOH B 26 2027 2027 HOH HOH . F 3 HOH B 27 2028 2028 HOH HOH . F 3 HOH B 28 2029 2029 HOH HOH . F 3 HOH B 29 2030 2030 HOH HOH . F 3 HOH B 30 2031 2031 HOH HOH . F 3 HOH B 31 2032 2032 HOH HOH . F 3 HOH B 32 2033 2033 HOH HOH . F 3 HOH B 33 2034 2034 HOH HOH . F 3 HOH B 34 2035 2035 HOH HOH . F 3 HOH B 35 2036 2036 HOH HOH . F 3 HOH B 36 2037 2037 HOH HOH . F 3 HOH B 37 2038 2038 HOH HOH . F 3 HOH B 38 2039 2039 HOH HOH . F 3 HOH B 39 2040 2040 HOH HOH . F 3 HOH B 40 2041 2041 HOH HOH . F 3 HOH B 41 2042 2042 HOH HOH . F 3 HOH B 42 2043 2043 HOH HOH . F 3 HOH B 43 2044 2044 HOH HOH . F 3 HOH B 44 2045 2045 HOH HOH . F 3 HOH B 45 2046 2046 HOH HOH . F 3 HOH B 46 2047 2047 HOH HOH . F 3 HOH B 47 2048 2048 HOH HOH . F 3 HOH B 48 2049 2049 HOH HOH . F 3 HOH B 49 2050 2050 HOH HOH . F 3 HOH B 50 2051 2051 HOH HOH . F 3 HOH B 51 2052 2052 HOH HOH . F 3 HOH B 52 2053 2053 HOH HOH . F 3 HOH B 53 2054 2054 HOH HOH . F 3 HOH B 54 2055 2055 HOH HOH . F 3 HOH B 55 2056 2056 HOH HOH . F 3 HOH B 56 2057 2057 HOH HOH . F 3 HOH B 57 2058 2058 HOH HOH . F 3 HOH B 58 2059 2059 HOH HOH . F 3 HOH B 59 2060 2060 HOH HOH . F 3 HOH B 60 2061 2061 HOH HOH . F 3 HOH B 61 2062 2062 HOH HOH . F 3 HOH B 62 2063 2063 HOH HOH . F 3 HOH B 63 2064 2064 HOH HOH . F 3 HOH B 64 2065 2065 HOH HOH . F 3 HOH B 65 2066 2066 HOH HOH . F 3 HOH B 66 2067 2067 HOH HOH . F 3 HOH B 67 2068 2068 HOH HOH . F 3 HOH B 68 2069 2069 HOH HOH . F 3 HOH B 69 2070 2070 HOH HOH . F 3 HOH B 70 2071 2071 HOH HOH . F 3 HOH B 71 2072 2072 HOH HOH . F 3 HOH B 72 2073 2073 HOH HOH . F 3 HOH B 73 2074 2074 HOH HOH . F 3 HOH B 74 2075 2075 HOH HOH . F 3 HOH B 75 2076 2076 HOH HOH . F 3 HOH B 76 2077 2077 HOH HOH . F 3 HOH B 77 2078 2078 HOH HOH . F 3 HOH B 78 2079 2079 HOH HOH . F 3 HOH B 79 2080 2080 HOH HOH . F 3 HOH B 80 2081 2081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 2 -17.882 16.277 89.01 1 25.78 ? P CMP 2001 B 1 HETATM 2 O O1P CMP . . . D 2 -17.204 17.325 88.194 1 29.45 ? O1P CMP 2001 B 1 HETATM 3 O O2P CMP . . . D 2 -17.279 16.097 90.431 1 27.49 ? O2P CMP 2001 B 1 HETATM 4 O O5' CMP . . . D 2 -19.41 16.803 89.156 1 28.06 ? O5' CMP 2001 B 1 HETATM 5 C C5' CMP . . . D 2 -20.22 16.658 87.981 1 24.71 ? C5' CMP 2001 B 1 HETATM 6 C C4' CMP . . . D 2 -20.063 15.295 87.389 1 25.13 ? C4' CMP 2001 B 1 HETATM 7 O O4' CMP . . . D 2 -20.759 14.999 86.146 1 26.87 ? O4' CMP 2001 B 1 HETATM 8 C C3' CMP . . . D 2 -18.633 14.887 87.048 1 25.83 ? C3' CMP 2001 B 1 HETATM 9 O O3' CMP . . . D 2 -17.888 14.866 88.266 1 24.73 ? O3' CMP 2001 B 1 HETATM 10 C C2' CMP . . . D 2 -18.847 13.541 86.385 1 26.37 ? C2' CMP 2001 B 1 HETATM 11 O O2' CMP . . . D 2 -18.977 12.46 87.33 1 27.18 ? O2' CMP 2001 B 1 HETATM 12 C C1' CMP . . . D 2 -20.237 13.704 85.739 1 26.47 ? C1' CMP 2001 B 1 HETATM 13 N N9 CMP . . . D 2 -20.291 13.854 84.272 1 28.4 ? N9 CMP 2001 B 1 HETATM 14 C C8 CMP . . . D 2 -19.797 14.866 83.498 1 26.22 ? C8 CMP 2001 B 1 HETATM 15 N N7 CMP . . . D 2 -20.071 14.604 82.207 1 29.4 ? N7 CMP 2001 B 1 HETATM 16 C C5 CMP . . . D 2 -20.739 13.432 82.165 1 27.04 ? C5 CMP 2001 B 1 HETATM 17 C C6 CMP . . . D 2 -21.356 12.7 81.147 1 31.19 ? C6 CMP 2001 B 1 HETATM 18 N N6 CMP . . . D 2 -21.324 13.165 79.867 1 26.42 ? N6 CMP 2001 B 1 HETATM 19 N N1 CMP . . . D 2 -21.979 11.514 81.475 1 31.41 ? N1 CMP 2001 B 1 HETATM 20 C C2 CMP . . . D 2 -22.037 11.08 82.739 1 30.82 ? C2 CMP 2001 B 1 HETATM 21 N N3 CMP . . . D 2 -21.499 11.793 83.763 1 29.15 ? N3 CMP 2001 B 1 HETATM 22 C C4 CMP . . . D 2 -20.861 12.959 83.489 1 29.93 ? C4 CMP 2001 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #