data_2ZMH
#
_model_server_result.job_id            ylvdb3qPYsuq0AP7Zx757A 
_model_server_result.datetime_utc      '2024-10-12 00:19:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zmh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    2ZMH 
#
_exptl.entry_id    2ZMH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.759 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R,7E,17beta)-17-{(1R,2E,4R)-4-hydroxy-1-methyl-4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]but-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.47 
_cell.angle_gamma         90 
_cell.entry_id            2ZMH 
_cell.length_a            154.643 
_cell.length_b            42.334 
_cell.length_c            42.066 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZMH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H50 O3' 
_chem_comp.formula_weight    506.759 
_chem_comp.id                NYA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R,7E,17beta)-17-{(1R,2E,4R)-4-hydroxy-1-methyl-4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]but-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C35 C36 NYA sing 237 n n 
C35 C38 NYA sing 238 n n 
C35 C37 NYA sing 239 n n 
C36 C31 NYA sing 240 n n 
C38 C33 NYA sing 241 n n 
C31 C32 NYA sing 242 n n 
C31 C30 NYA sing 243 n n 
C32 C33 NYA sing 244 n n 
C33 C34 NYA sing 245 n n 
C17 C16 NYA sing 246 n n 
C17 C13 NYA sing 247 n n 
C17 C20 NYA sing 248 n n 
C21 C20 NYA sing 249 n n 
C16 C15 NYA sing 250 n n 
C13 C14 NYA sing 251 n n 
C13 C12 NYA sing 252 n n 
C13 C18 NYA sing 253 n n 
C15 C14 NYA sing 254 n n 
C14 C8 NYA sing 255 n n 
C8 C7 NYA doub 256 n n 
C8 C9 NYA sing 257 n n 
C12 C11 NYA sing 258 n n 
C7 C6 NYA sing 259 n n 
C9 C11 NYA sing 260 n n 
C6 C5 NYA doub 261 n n 
C23 C22 NYA doub 262 n n 
C23 C24 NYA sing 263 n n 
C22 C20 NYA sing 264 n n 
C24 C29 NYA sing 265 n n 
C24 O3 NYA sing 266 n n 
C29 C30 NYA sing 267 n n 
C29 C34 NYA sing 268 n n 
C29 C37 NYA sing 269 n n 
C28 C2 NYA doub 270 n n 
C5 C10 NYA sing 271 n n 
C5 C4 NYA sing 272 n n 
C10 C1 NYA sing 273 n n 
C4 C3 NYA sing 274 e n 
C1 C2 NYA sing 275 n n 
C1 O1 NYA sing 276 n n 
C2 C3 NYA sing 277 n n 
C3 O2 NYA sing 278 n n 
C35 H35 NYA sing 279 n n 
C36 H36 NYA sing 280 n n 
C36 H36A NYA sing 281 n n 
C38 H38 NYA sing 282 n n 
C38 H38A NYA sing 283 n n 
C31 H31 NYA sing 284 n n 
C32 H32 NYA sing 285 n n 
C32 H32A NYA sing 286 n n 
C33 H33 NYA sing 287 n n 
C17 H17 NYA sing 288 n n 
C21 H21 NYA sing 289 e n 
C21 H21A NYA sing 290 n n 
C21 H21B NYA sing 291 n n 
C16 H16 NYA sing 292 n n 
C16 H16A NYA sing 293 n n 
C15 H15 NYA sing 294 n n 
C15 H15A NYA sing 295 n n 
C14 H14 NYA sing 296 n n 
C12 H12 NYA sing 297 n n 
C12 H12A NYA sing 298 n n 
C18 H18 NYA sing 299 n n 
C18 H18A NYA sing 300 n n 
C18 H18B NYA sing 301 n n 
C7 H7 NYA sing 302 n n 
C9 H9 NYA sing 303 n n 
C9 H9A NYA sing 304 n n 
C6 H6 NYA sing 305 n n 
C23 H23 NYA sing 306 n n 
C22 H22 NYA sing 307 n n 
C24 H24 NYA sing 308 n n 
C20 H20 NYA sing 309 n n 
C28 H28 NYA sing 310 n n 
C28 H28A NYA sing 311 n n 
C30 H30 NYA sing 312 n n 
C30 H30A NYA sing 313 n n 
C34 H34 NYA sing 314 n n 
C34 H34A NYA sing 315 n n 
C37 H37 NYA sing 316 n n 
C37 H37A NYA sing 317 n n 
C10 H10 NYA sing 318 n n 
C10 H10A NYA sing 319 n n 
C4 H4 NYA sing 320 n n 
C4 H4A NYA sing 321 n n 
C11 H11 NYA sing 322 n n 
C11 H11A NYA sing 323 n n 
C1 H1 NYA sing 324 n n 
C3 H3 NYA sing 325 n n 
O3 HO3 NYA sing 326 n n 
O2 HO2 NYA sing 327 n n 
O1 HO1 NYA sing 328 n n 
#
_atom_sites.entry_id                     2ZMH 
_atom_sites.fract_transf_matrix[1][1]    0.006467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000619 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NYA A 1 1 1 NYA NYA . 
D 4 HOH A 1 424 424 HOH HOH . 
D 4 HOH A 2 425 425 HOH HOH . 
D 4 HOH A 3 426 426 HOH HOH . 
D 4 HOH A 4 427 427 HOH HOH . 
D 4 HOH A 5 428 428 HOH HOH . 
D 4 HOH A 6 429 429 HOH HOH . 
D 4 HOH A 7 430 430 HOH HOH . 
D 4 HOH A 8 431 431 HOH HOH . 
D 4 HOH A 9 432 432 HOH HOH . 
D 4 HOH A 10 433 433 HOH HOH . 
D 4 HOH A 11 434 434 HOH HOH . 
D 4 HOH A 12 435 435 HOH HOH . 
D 4 HOH A 13 436 436 HOH HOH . 
D 4 HOH A 14 437 437 HOH HOH . 
D 4 HOH A 15 438 438 HOH HOH . 
D 4 HOH A 16 439 439 HOH HOH . 
D 4 HOH A 17 440 440 HOH HOH . 
D 4 HOH A 18 441 441 HOH HOH . 
D 4 HOH A 19 442 442 HOH HOH . 
D 4 HOH A 20 443 443 HOH HOH . 
D 4 HOH A 21 444 444 HOH HOH . 
D 4 HOH A 22 445 445 HOH HOH . 
D 4 HOH A 23 446 446 HOH HOH . 
D 4 HOH A 24 447 447 HOH HOH . 
D 4 HOH A 25 448 448 HOH HOH . 
D 4 HOH A 26 449 449 HOH HOH . 
D 4 HOH A 27 450 450 HOH HOH . 
D 4 HOH A 28 451 451 HOH HOH . 
D 4 HOH A 29 452 452 HOH HOH . 
D 4 HOH A 30 453 453 HOH HOH . 
E 4 HOH C 1 28 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C35 NYA . . . C 3 7.498 6.163 26.849 1 35.1 ? C35 NYA 1 A 1 
HETATM 2 C C36 NYA . . . C 3 7.119 6.399 28.345 1 34.32 ? C36 NYA 1 A 1 
HETATM 3 C C38 NYA . . . C 3 6.695 4.939 26.29 1 37.52 ? C38 NYA 1 A 1 
HETATM 4 C C31 NYA . . . C 3 7.429 5.113 29.182 1 37.67 ? C31 NYA 1 A 1 
HETATM 5 C C32 NYA . . . C 3 6.634 3.9 28.605 1 34.55 ? C32 NYA 1 A 1 
HETATM 6 C C33 NYA . . . C 3 7.026 3.661 27.113 1 35.89 ? C33 NYA 1 A 1 
HETATM 7 C C17 NYA . . . C 3 14.806 7.528 27.266 1 27.55 ? C17 NYA 1 A 1 
HETATM 8 C C21 NYA . . . C 3 14.795 6.087 29.329 1 27.4 ? C21 NYA 1 A 1 
HETATM 9 C C16 NYA . . . C 3 15.543 6.789 26.119 1 26.23 ? C16 NYA 1 A 1 
HETATM 10 C C13 NYA . . . C 3 14.106 8.711 26.531 1 24.87 ? C13 NYA 1 A 1 
HETATM 11 C C15 NYA . . . C 3 15.906 7.884 25.087 1 25.28 ? C15 NYA 1 A 1 
HETATM 12 C C14 NYA . . . C 3 15.372 9.159 25.761 1 26.29 ? C14 NYA 1 A 1 
HETATM 13 C C8 NYA . . . C 3 15.044 10.38 24.902 1 27.23 ? C8 NYA 1 A 1 
HETATM 14 C C12 NYA . . . C 3 13.635 9.885 27.454 1 27.73 ? C12 NYA 1 A 1 
HETATM 15 C C18 NYA . . . C 3 12.928 8.269 25.6 1 18.53 ? C18 NYA 1 A 1 
HETATM 16 C C7 NYA . . . C 3 15.026 10.391 23.547 1 30.36 ? C7 NYA 1 A 1 
HETATM 17 C C9 NYA . . . C 3 14.715 11.571 25.767 1 31.91 ? C9 NYA 1 A 1 
HETATM 18 C C6 NYA . . . C 3 14.727 11.596 22.729 1 33.74 ? C6 NYA 1 A 1 
HETATM 19 C C23 NYA . . . C 3 11.809 5.359 28.025 1 36.63 ? C23 NYA 1 A 1 
HETATM 20 C C22 NYA . . . C 3 13.076 5.577 27.632 1 30.67 ? C22 NYA 1 A 1 
HETATM 21 C C24 NYA . . . C 3 10.91 4.275 27.48 1 38.35 ? C24 NYA 1 A 1 
HETATM 22 C C20 NYA . . . C 3 13.92 6.683 28.225 1 25.9 ? C20 NYA 1 A 1 
HETATM 23 C C29 NYA . . . C 3 9.396 4.58 27.595 1 36.52 ? C29 NYA 1 A 1 
HETATM 24 C C28 NYA . . . C 3 14.318 12.026 17.293 1 24.25 ? C28 NYA 1 A 1 
HETATM 25 C C30 NYA . . . C 3 8.958 4.809 29.088 1 35.06 ? C30 NYA 1 A 1 
HETATM 26 C C34 NYA . . . C 3 8.565 3.382 27.008 1 40.76 ? C34 NYA 1 A 1 
HETATM 27 C C37 NYA . . . C 3 9.028 5.862 26.759 1 34.83 ? C37 NYA 1 A 1 
HETATM 28 C C5 NYA . . . C 3 14.64 11.591 21.372 1 30.89 ? C5 NYA 1 A 1 
HETATM 29 C C10 NYA . . . C 3 14.792 10.293 20.531 1 24.59 ? C10 NYA 1 A 1 
HETATM 30 C C4 NYA . . . C 3 14.342 12.911 20.649 1 31.01 ? C4 NYA 1 A 1 
HETATM 31 C C11 NYA . . . C 3 13.517 11.245 26.689 1 29.17 ? C11 NYA 1 A 1 
HETATM 32 C C1 NYA . . . C 3 15.265 10.485 19.078 1 26.84 ? C1 NYA 1 A 1 
HETATM 33 C C2 NYA . . . C 3 14.895 11.846 18.502 1 31.8 ? C2 NYA 1 A 1 
HETATM 34 C C3 NYA . . . C 3 15.186 13.029 19.372 1 32.73 ? C3 NYA 1 A 1 
HETATM 35 O O3 NYA . . . C 3 11.215 3.067 28.172 1 40.41 ? O3 NYA 1 A 1 
HETATM 36 O O2 NYA . . . C 3 16.558 13.034 19.726 1 25.03 ? O2 NYA 1 A 1 
HETATM 37 O O1 NYA . . . C 3 14.68 9.43 18.327 1 29.72 ? O1 NYA 1 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           37 
#