data_2ZMI # _model_server_result.job_id e21dXksYpFccjQnMhll95g _model_server_result.datetime_utc '2024-10-11 21:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2ZMI # _exptl.entry_id 2ZMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 520.786 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3R,7E,17beta)-17-{(1S,2E,5R)-5-hydroxy-1-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]pent-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.21 _cell.angle_gamma 90 _cell.entry_id 2ZMI _cell.length_a 155.222 _cell.length_b 42.412 _cell.length_c 41.955 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H52 O3' _chem_comp.formula_weight 520.786 _chem_comp.id TT2 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3R,7E,17beta)-17-{(1S,2E,5R)-5-hydroxy-1-methyl-5-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]pent-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C20 TT2 sing 347 n n C17 C16 TT2 sing 348 n n C17 C13 TT2 sing 349 n n C1 C2 TT2 sing 350 n n C1 C10 TT2 sing 351 n n C1 O1 TT2 sing 352 n n C4 C3 TT2 sing 353 n n C4 C5 TT2 sing 354 n n C20 C22 TT2 sing 355 n n C20 C21 TT2 sing 356 n n C12 C11 TT2 sing 357 n n C12 C13 TT2 sing 358 n n C18 C13 TT2 sing 359 n n C2 C3 TT2 sing 360 n n C2 C28 TT2 doub 361 n n C3 O2 TT2 sing 362 n n C16 C15 TT2 sing 363 n n C11 C9 TT2 sing 364 n n C22 C23 TT2 doub 365 n n C23 C24 TT2 sing 366 n n C36 C35 TT2 sing 367 n n C36 C31 TT2 sing 368 n n C24 C25 TT2 sing 369 n n C35 C37 TT2 sing 370 n n C35 C38 TT2 sing 371 n n C31 C30 TT2 sing 372 n n C31 C32 TT2 sing 373 n n C8 C7 TT2 doub 374 n n C8 C14 TT2 sing 375 n n C8 C9 TT2 sing 376 n n C7 C6 TT2 sing 377 n n C14 C15 TT2 sing 378 n n C14 C13 TT2 sing 379 n n C6 C5 TT2 doub 380 n n C5 C10 TT2 sing 381 n n C30 C29 TT2 sing 382 e n C29 C34 TT2 sing 383 n n C29 C37 TT2 sing 384 n n C29 C25 TT2 sing 385 n n C32 C33 TT2 sing 386 n n C34 C33 TT2 sing 387 n n C33 C38 TT2 sing 388 n n C25 O3 TT2 sing 389 n n C17 H17 TT2 sing 390 n n C1 H1 TT2 sing 391 n n C4 H4 TT2 sing 392 n n C4 H4A TT2 sing 393 n n C20 H20 TT2 sing 394 n n C12 H12 TT2 sing 395 n n C12 H12A TT2 sing 396 n n C18 H18 TT2 sing 397 n n C18 H18A TT2 sing 398 n n C18 H18B TT2 sing 399 n n C3 H3 TT2 sing 400 n n C16 H16 TT2 sing 401 n n C16 H16A TT2 sing 402 e n C11 H11 TT2 sing 403 n n C11 H11A TT2 sing 404 n n C28 H28 TT2 sing 405 n n C28 H28A TT2 sing 406 n n C22 H22 TT2 sing 407 n n C23 H23 TT2 sing 408 n n C21 H21 TT2 sing 409 n n C21 H21A TT2 sing 410 n n C21 H21B TT2 sing 411 n n C36 H36 TT2 sing 412 n n C36 H36A TT2 sing 413 n n C24 H24 TT2 sing 414 n n C24 H24A TT2 sing 415 n n C35 H35 TT2 sing 416 n n C31 H31 TT2 sing 417 n n C7 H7 TT2 sing 418 n n C14 H14 TT2 sing 419 n n C9 H9 TT2 sing 420 n n C9 H9A TT2 sing 421 n n C6 H6 TT2 sing 422 n n C15 H15 TT2 sing 423 n n C15 H15A TT2 sing 424 n n C10 H10 TT2 sing 425 n n C10 H10A TT2 sing 426 n n C30 H30 TT2 sing 427 n n C30 H30A TT2 sing 428 n n C32 H32 TT2 sing 429 n n C32 H32A TT2 sing 430 n n C34 H34 TT2 sing 431 n n C34 H34A TT2 sing 432 n n C33 H33 TT2 sing 433 n n C37 H37 TT2 sing 434 n n C37 H37A TT2 sing 435 n n C25 H25 TT2 sing 436 n n C38 H38 TT2 sing 437 n n C38 H38A TT2 sing 438 n n O2 HO2 TT2 sing 439 n n O3 HO3 TT2 sing 440 n n O1 HO1 TT2 sing 441 n n # _atom_sites.entry_id 2ZMI _atom_sites.fract_transf_matrix[1][1] 0.006442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TT2 A 1 1 1 TT2 TT2 . D 4 EDO A 1 424 424 EDO EDO . E 5 FMT A 1 425 425 FMT FMT . F 6 HOH A 1 426 426 HOH HOH . F 6 HOH A 2 427 427 HOH HOH . F 6 HOH A 3 428 428 HOH HOH . F 6 HOH A 4 429 429 HOH HOH . F 6 HOH A 5 430 430 HOH HOH . F 6 HOH A 6 431 431 HOH HOH . F 6 HOH A 7 432 432 HOH HOH . F 6 HOH A 8 433 433 HOH HOH . F 6 HOH A 9 434 434 HOH HOH . F 6 HOH A 10 435 435 HOH HOH . F 6 HOH A 11 436 436 HOH HOH . F 6 HOH A 12 437 437 HOH HOH . F 6 HOH A 13 438 438 HOH HOH . F 6 HOH A 14 439 439 HOH HOH . F 6 HOH A 15 440 440 HOH HOH . F 6 HOH A 16 441 441 HOH HOH . F 6 HOH A 17 442 442 HOH HOH . F 6 HOH A 18 443 443 HOH HOH . F 6 HOH A 19 444 444 HOH HOH . F 6 HOH A 20 445 445 HOH HOH . F 6 HOH A 21 446 446 HOH HOH . F 6 HOH A 22 447 447 HOH HOH . F 6 HOH A 23 448 448 HOH HOH . F 6 HOH A 24 449 449 HOH HOH . F 6 HOH A 25 450 450 HOH HOH . F 6 HOH A 26 451 451 HOH HOH . F 6 HOH A 27 452 452 HOH HOH . F 6 HOH A 28 453 453 HOH HOH . F 6 HOH A 29 454 454 HOH HOH . F 6 HOH A 30 455 455 HOH HOH . F 6 HOH A 31 456 456 HOH HOH . F 6 HOH A 32 457 457 HOH HOH . F 6 HOH A 33 458 458 HOH HOH . F 6 HOH A 34 459 459 HOH HOH . F 6 HOH A 35 460 460 HOH HOH . F 6 HOH A 36 461 461 HOH HOH . F 6 HOH A 37 462 462 HOH HOH . F 6 HOH A 38 463 463 HOH HOH . F 6 HOH A 39 464 464 HOH HOH . F 6 HOH A 40 465 465 HOH HOH . F 6 HOH A 41 466 466 HOH HOH . F 6 HOH A 42 467 467 HOH HOH . F 6 HOH A 43 468 468 HOH HOH . F 6 HOH A 44 469 469 HOH HOH . F 6 HOH A 45 470 470 HOH HOH . F 6 HOH A 46 471 471 HOH HOH . F 6 HOH A 47 472 472 HOH HOH . F 6 HOH A 48 473 473 HOH HOH . F 6 HOH A 49 474 474 HOH HOH . F 6 HOH A 50 475 475 HOH HOH . F 6 HOH A 51 476 476 HOH HOH . F 6 HOH A 52 477 477 HOH HOH . F 6 HOH A 53 478 478 HOH HOH . F 6 HOH A 54 479 479 HOH HOH . F 6 HOH A 55 480 480 HOH HOH . F 6 HOH A 56 481 481 HOH HOH . F 6 HOH A 57 482 482 HOH HOH . F 6 HOH A 58 483 483 HOH HOH . F 6 HOH A 59 484 484 HOH HOH . F 6 HOH A 60 485 485 HOH HOH . F 6 HOH A 61 486 486 HOH HOH . F 6 HOH A 62 487 487 HOH HOH . F 6 HOH A 63 488 488 HOH HOH . F 6 HOH A 64 489 489 HOH HOH . F 6 HOH A 65 490 490 HOH HOH . F 6 HOH A 66 491 491 HOH HOH . F 6 HOH A 67 492 492 HOH HOH . F 6 HOH A 68 493 493 HOH HOH . F 6 HOH A 69 494 494 HOH HOH . F 6 HOH A 70 495 495 HOH HOH . F 6 HOH A 71 496 496 HOH HOH . F 6 HOH A 72 497 497 HOH HOH . F 6 HOH A 73 498 498 HOH HOH . F 6 HOH A 74 499 499 HOH HOH . F 6 HOH A 75 500 500 HOH HOH . F 6 HOH A 76 501 501 HOH HOH . F 6 HOH A 77 502 502 HOH HOH . F 6 HOH A 78 503 503 HOH HOH . F 6 HOH A 79 504 504 HOH HOH . F 6 HOH A 80 505 505 HOH HOH . F 6 HOH A 81 506 506 HOH HOH . F 6 HOH A 82 507 507 HOH HOH . F 6 HOH A 83 508 508 HOH HOH . F 6 HOH A 84 509 509 HOH HOH . F 6 HOH A 85 510 510 HOH HOH . F 6 HOH A 86 511 511 HOH HOH . F 6 HOH A 87 512 512 HOH HOH . F 6 HOH A 88 513 513 HOH HOH . F 6 HOH A 89 514 514 HOH HOH . F 6 HOH A 90 515 515 HOH HOH . F 6 HOH A 91 516 516 HOH HOH . F 6 HOH A 92 517 517 HOH HOH . F 6 HOH A 93 518 518 HOH HOH . F 6 HOH A 94 519 519 HOH HOH . F 6 HOH A 95 520 520 HOH HOH . F 6 HOH A 96 521 521 HOH HOH . F 6 HOH A 97 522 522 HOH HOH . F 6 HOH A 98 523 523 HOH HOH . F 6 HOH A 99 524 524 HOH HOH . F 6 HOH A 100 525 525 HOH HOH . F 6 HOH A 101 526 526 HOH HOH . F 6 HOH A 102 527 527 HOH HOH . F 6 HOH A 103 528 528 HOH HOH . F 6 HOH A 104 529 529 HOH HOH . F 6 HOH A 105 530 530 HOH HOH . F 6 HOH A 106 531 531 HOH HOH . F 6 HOH A 107 532 532 HOH HOH . F 6 HOH A 108 533 533 HOH HOH . F 6 HOH A 109 534 534 HOH HOH . F 6 HOH A 110 535 535 HOH HOH . F 6 HOH A 111 536 536 HOH HOH . F 6 HOH A 112 537 537 HOH HOH . F 6 HOH A 113 538 538 HOH HOH . F 6 HOH A 114 539 539 HOH HOH . F 6 HOH A 115 540 540 HOH HOH . F 6 HOH A 116 541 541 HOH HOH . F 6 HOH A 117 542 542 HOH HOH . F 6 HOH A 118 543 543 HOH HOH . F 6 HOH A 119 544 544 HOH HOH . F 6 HOH A 120 545 545 HOH HOH . F 6 HOH A 121 546 546 HOH HOH . F 6 HOH A 122 547 547 HOH HOH . F 6 HOH A 123 548 548 HOH HOH . F 6 HOH A 124 549 549 HOH HOH . F 6 HOH A 125 550 550 HOH HOH . F 6 HOH A 126 551 551 HOH HOH . F 6 HOH A 127 552 552 HOH HOH . F 6 HOH A 128 553 553 HOH HOH . F 6 HOH A 129 554 554 HOH HOH . F 6 HOH A 130 555 555 HOH HOH . F 6 HOH A 131 556 556 HOH HOH . F 6 HOH A 132 557 557 HOH HOH . F 6 HOH A 133 558 558 HOH HOH . F 6 HOH A 134 559 559 HOH HOH . F 6 HOH A 135 560 560 HOH HOH . F 6 HOH A 136 561 561 HOH HOH . F 6 HOH A 137 562 562 HOH HOH . F 6 HOH A 138 563 563 HOH HOH . F 6 HOH A 139 564 564 HOH HOH . F 6 HOH A 140 565 565 HOH HOH . F 6 HOH A 141 566 566 HOH HOH . F 6 HOH A 142 567 567 HOH HOH . F 6 HOH A 143 568 568 HOH HOH . F 6 HOH A 144 569 569 HOH HOH . F 6 HOH A 145 570 570 HOH HOH . F 6 HOH A 146 571 571 HOH HOH . F 6 HOH A 147 572 572 HOH HOH . F 6 HOH A 148 573 573 HOH HOH . F 6 HOH A 149 574 574 HOH HOH . F 6 HOH A 150 575 575 HOH HOH . F 6 HOH A 151 576 576 HOH HOH . F 6 HOH A 152 577 577 HOH HOH . F 6 HOH A 153 578 578 HOH HOH . F 6 HOH A 154 579 579 HOH HOH . F 6 HOH A 155 580 580 HOH HOH . F 6 HOH A 156 581 581 HOH HOH . F 6 HOH A 157 582 582 HOH HOH . F 6 HOH A 158 583 583 HOH HOH . F 6 HOH A 159 584 584 HOH HOH . F 6 HOH A 160 585 585 HOH HOH . F 6 HOH A 161 586 586 HOH HOH . F 6 HOH A 162 587 587 HOH HOH . F 6 HOH A 163 588 588 HOH HOH . F 6 HOH A 164 589 589 HOH HOH . G 6 HOH C 1 66 66 HOH HOH . G 6 HOH C 2 95 95 HOH HOH . G 6 HOH C 3 134 134 HOH HOH . G 6 HOH C 4 162 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 TT2 . . . C 3 15.868 2.75 26.563 1 17.23 ? C17 TT2 1 A 1 HETATM 2 C C1 TT2 . . . C 3 16.261 5.963 18.838 1 17.17 ? C1 TT2 1 A 1 HETATM 3 C C4 TT2 . . . C 3 15.481 8.478 20.36 1 20.65 ? C4 TT2 1 A 1 HETATM 4 C C20 TT2 . . . C 3 15.101 1.42 26.816 1 18.49 ? C20 TT2 1 A 1 HETATM 5 C C12 TT2 . . . C 3 14.35 4.931 26.747 1 21.79 ? C12 TT2 1 A 1 HETATM 6 C C18 TT2 . . . C 3 14.295 3.481 24.621 1 18.57 ? C18 TT2 1 A 1 HETATM 7 C C2 TT2 . . . C 3 15.764 7.257 18.257 1 17.16 ? C2 TT2 1 A 1 HETATM 8 C C3 TT2 . . . C 3 16.169 8.497 18.988 1 16.24 ? C3 TT2 1 A 1 HETATM 9 C C16 TT2 . . . C 3 17.193 2.507 25.778 1 19.39 ? C16 TT2 1 A 1 HETATM 10 C C11 TT2 . . . C 3 14.207 6.384 26.154 1 19.95 ? C11 TT2 1 A 1 HETATM 11 C C28 TT2 . . . C 3 14.975 7.338 17.173 1 17.51 ? C28 TT2 1 A 1 HETATM 12 C C22 TT2 . . . C 3 13.761 1.562 27.489 1 18.95 ? C22 TT2 1 A 1 HETATM 13 C C23 TT2 . . . C 3 12.633 1.197 26.87 1 17.43 ? C23 TT2 1 A 1 HETATM 14 C C21 TT2 . . . C 3 15.926 0.434 27.663 1 20.98 ? C21 TT2 1 A 1 HETATM 15 C C36 TT2 . . . C 3 6.6 1.011 29.051 1 24.07 ? C36 TT2 1 A 1 HETATM 16 C C24 TT2 . . . C 3 11.263 1.28 27.466 1 18 ? C24 TT2 1 A 1 HETATM 17 C C35 TT2 . . . C 3 6.72 1.192 27.504 1 25.26 ? C35 TT2 1 A 1 HETATM 18 C C31 TT2 . . . C 3 7.313 -0.301 29.504 1 25.04 ? C31 TT2 1 A 1 HETATM 19 C C8 TT2 . . . C 3 16.081 5.946 24.618 1 19.31 ? C8 TT2 1 A 1 HETATM 20 C C7 TT2 . . . C 3 16.185 6.055 23.276 1 19.56 ? C7 TT2 1 A 1 HETATM 21 C C14 TT2 . . . C 3 16.45 4.707 25.379 1 17.37 ? C14 TT2 1 A 1 HETATM 22 C C9 TT2 . . . C 3 15.502 6.976 25.531 1 19.96 ? C9 TT2 1 A 1 HETATM 23 C C6 TT2 . . . C 3 15.838 7.246 22.482 1 21.08 ? C6 TT2 1 A 1 HETATM 24 C C15 TT2 . . . C 3 17.394 3.664 24.813 1 18.06 ? C15 TT2 1 A 1 HETATM 25 C C5 TT2 . . . C 3 15.813 7.2 21.135 1 18.93 ? C5 TT2 1 A 1 HETATM 26 C C13 TT2 . . . C 3 15.169 3.944 25.829 1 18.12 ? C13 TT2 1 A 1 HETATM 27 C C10 TT2 . . . C 3 16.044 5.857 20.363 1 24.38 ? C10 TT2 1 A 1 HETATM 28 C C30 TT2 . . . C 3 8.825 -0.198 29.128 1 25.05 ? C30 TT2 1 A 1 HETATM 29 C C29 TT2 . . . C 3 8.991 -0.014 27.572 1 21.45 ? C29 TT2 1 A 1 HETATM 30 C C32 TT2 . . . C 3 6.675 -1.524 28.769 1 23.37 ? C32 TT2 1 A 1 HETATM 31 C C34 TT2 . . . C 3 8.328 -1.246 26.861 1 22.76 ? C34 TT2 1 A 1 HETATM 32 C C33 TT2 . . . C 3 6.808 -1.35 27.223 1 24.67 ? C33 TT2 1 A 1 HETATM 33 C C37 TT2 . . . C 3 8.234 1.282 27.12 1 22.43 ? C37 TT2 1 A 1 HETATM 34 C C25 TT2 . . . C 3 10.466 0.023 27.137 1 21.05 ? C25 TT2 1 A 1 HETATM 35 C C38 TT2 . . . C 3 6.08 -0.038 26.787 1 24.16 ? C38 TT2 1 A 1 HETATM 36 O O2 TT2 . . . C 3 17.586 8.526 19.186 1 14.32 ? O2 TT2 1 A 1 HETATM 37 O O3 TT2 . . . C 3 11.167 -1.088 27.688 1 22.33 ? O3 TT2 1 A 1 HETATM 38 O O1 TT2 . . . C 3 15.612 4.838 18.25 1 14.6 ? O1 TT2 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #