data_2ZMJ
#
_model_server_result.job_id            TrE3z-rOsErPPJF-SOxHHg 
_model_server_result.datetime_utc      '2024-10-25 20:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    2ZMJ 
#
_exptl.entry_id    2ZMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              534.812 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R,7E,17beta)-17-{(1S,2E,5R)-5-hydroxy-1-methyl-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.5 
_cell.angle_gamma         90 
_cell.entry_id            2ZMJ 
_cell.length_a            153.73 
_cell.length_b            43.242 
_cell.length_c            41.953 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H54 O3' 
_chem_comp.formula_weight    534.812 
_chem_comp.id                MI4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R,7E,17beta)-17-{(1S,2E,5R)-5-hydroxy-1-methyl-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-2-en-1-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 MI4 sing 237 n n 
C16 C17 MI4 sing 238 n n 
C21 C20 MI4 sing 239 n n 
C34 C33 MI4 sing 240 n n 
C34 C29 MI4 sing 241 n n 
C15 C14 MI4 sing 242 n n 
C13 C14 MI4 sing 243 n n 
C13 C12 MI4 sing 244 n n 
C13 C18 MI4 sing 245 n n 
C13 C17 MI4 sing 246 n n 
C28 C2 MI4 doub 247 n n 
C37 C35 MI4 sing 248 n n 
C37 C29 MI4 sing 249 n n 
C14 C8 MI4 sing 250 n n 
C33 C32 MI4 sing 251 n n 
C33 C38 MI4 sing 252 n n 
C35 C36 MI4 sing 253 n n 
C35 C38 MI4 sing 254 n n 
C30 C31 MI4 sing 255 n n 
C30 C29 MI4 sing 256 n n 
C8 C7 MI4 doub 257 n n 
C8 C9 MI4 sing 258 n n 
C12 C11 MI4 sing 259 n n 
C31 C32 MI4 sing 260 n n 
C31 C36 MI4 sing 261 n n 
C11 C9 MI4 sing 262 n n 
C7 C6 MI4 sing 263 n n 
C23 C22 MI4 doub 264 n n 
C23 C24 MI4 sing 265 n n 
C22 C20 MI4 sing 266 n n 
C24 C25 MI4 sing 267 n n 
C25 C26 MI4 sing 268 n n 
C25 O3 MI4 sing 269 n n 
C20 C17 MI4 sing 270 n n 
C26 C29 MI4 sing 271 n n 
C3 C4 MI4 sing 272 n n 
C3 C2 MI4 sing 273 n n 
C3 O2 MI4 sing 274 n n 
C6 C5 MI4 doub 275 e n 
C5 C10 MI4 sing 276 n n 
C5 C4 MI4 sing 277 n n 
C10 C1 MI4 sing 278 n n 
C1 C2 MI4 sing 279 n n 
C1 O1 MI4 sing 280 n n 
C16 H16 MI4 sing 281 n n 
C16 H16A MI4 sing 282 n n 
C21 H21 MI4 sing 283 n n 
C21 H21A MI4 sing 284 n n 
C21 H21B MI4 sing 285 n n 
C34 H34 MI4 sing 286 n n 
C34 H34A MI4 sing 287 n n 
C15 H15 MI4 sing 288 n n 
C15 H15A MI4 sing 289 n n 
C28 H28 MI4 sing 290 n n 
C28 H28A MI4 sing 291 n n 
C37 H37 MI4 sing 292 n n 
C37 H37A MI4 sing 293 e n 
C14 H14 MI4 sing 294 n n 
C33 H33 MI4 sing 295 n n 
C35 H35 MI4 sing 296 n n 
C30 H30 MI4 sing 297 n n 
C30 H30A MI4 sing 298 n n 
C12 H12 MI4 sing 299 n n 
C12 H12A MI4 sing 300 n n 
C18 H18 MI4 sing 301 n n 
C18 H18A MI4 sing 302 n n 
C18 H18B MI4 sing 303 n n 
C31 H31 MI4 sing 304 n n 
C11 H11 MI4 sing 305 n n 
C11 H11A MI4 sing 306 n n 
C7 H7 MI4 sing 307 n n 
C32 H32 MI4 sing 308 n n 
C32 H32A MI4 sing 309 n n 
C23 H23 MI4 sing 310 n n 
C22 H22 MI4 sing 311 n n 
C24 H24 MI4 sing 312 n n 
C24 H24A MI4 sing 313 n n 
C25 H25 MI4 sing 314 n n 
C20 H20 MI4 sing 315 n n 
C26 H26 MI4 sing 316 n n 
C26 H26A MI4 sing 317 n n 
C17 H17 MI4 sing 318 n n 
C3 H3 MI4 sing 319 n n 
C9 H9 MI4 sing 320 n n 
C9 H9A MI4 sing 321 n n 
C6 H6 MI4 sing 322 n n 
C36 H36 MI4 sing 323 n n 
C36 H36A MI4 sing 324 n n 
C38 H38 MI4 sing 325 n n 
C38 H38A MI4 sing 326 n n 
C10 H10 MI4 sing 327 n n 
C10 H10A MI4 sing 328 n n 
C1 H1 MI4 sing 329 n n 
C4 H4 MI4 sing 330 n n 
C4 H4A MI4 sing 331 n n 
O3 HO3 MI4 sing 332 n n 
O1 HO1 MI4 sing 333 n n 
O2 HO2 MI4 sing 334 n n 
#
_atom_sites.entry_id                     2ZMJ 
_atom_sites.fract_transf_matrix[1][1]    0.006505 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000626 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MI4 A 1 1 1 MI4 MI4 . 
D 4 HOH A 1 424 424 HOH HOH . 
D 4 HOH A 2 425 425 HOH HOH . 
D 4 HOH A 3 426 426 HOH HOH . 
D 4 HOH A 4 427 427 HOH HOH . 
D 4 HOH A 5 428 428 HOH HOH . 
D 4 HOH A 6 429 429 HOH HOH . 
D 4 HOH A 7 430 430 HOH HOH . 
D 4 HOH A 8 431 431 HOH HOH . 
D 4 HOH A 9 432 432 HOH HOH . 
D 4 HOH A 10 433 433 HOH HOH . 
D 4 HOH A 11 434 434 HOH HOH . 
D 4 HOH A 12 435 435 HOH HOH . 
D 4 HOH A 13 436 436 HOH HOH . 
D 4 HOH A 14 437 437 HOH HOH . 
D 4 HOH A 15 438 438 HOH HOH . 
E 4 HOH C 1 2 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C16 MI4 . . . C 3 15.91 6.684 25.746 1 39.87 ? C16 MI4 1 A 1 
HETATM 2 C C21 MI4 . . . C 3 14.585 4.571 27.372 1 45.04 ? C21 MI4 1 A 1 
HETATM 3 C C34 MI4 . . . C 3 8.198 3.208 28.967 1 51.88 ? C34 MI4 1 A 1 
HETATM 4 C C15 MI4 . . . C 3 16.23 7.903 24.892 1 37.96 ? C15 MI4 1 A 1 
HETATM 5 C C13 MI4 . . . C 3 14.176 8.369 26.137 1 39.28 ? C13 MI4 1 A 1 
HETATM 6 C C28 MI4 . . . C 3 14.045 12.142 17.32 1 36.66 ? C28 MI4 1 A 1 
HETATM 7 C C37 MI4 . . . C 3 9.632 4.002 26.997 1 51.5 ? C37 MI4 1 A 1 
HETATM 8 C C14 MI4 . . . C 3 15.478 9.007 25.6 1 38.54 ? C14 MI4 1 A 1 
HETATM 9 C C33 MI4 . . . C 3 7.911 1.867 28.209 1 50.58 ? C33 MI4 1 A 1 
HETATM 10 C C35 MI4 . . . C 3 9.343 2.672 26.242 1 51.53 ? C35 MI4 1 A 1 
HETATM 11 C C30 MI4 . . . C 3 7.153 4.542 27.068 1 51.36 ? C30 MI4 1 A 1 
HETATM 12 C C8 MI4 . . . C 3 15.117 10.273 24.822 1 39.05 ? C8 MI4 1 A 1 
HETATM 13 C C12 MI4 . . . C 3 13.571 9.408 27.153 1 37.92 ? C12 MI4 1 A 1 
HETATM 14 C C18 MI4 . . . C 3 13.135 8.028 25.022 1 37.8 ? C18 MI4 1 A 1 
HETATM 15 C C31 MI4 . . . C 3 6.843 3.212 26.301 1 52.95 ? C31 MI4 1 A 1 
HETATM 16 C C11 MI4 . . . C 3 13.415 10.846 26.548 1 35.52 ? C11 MI4 1 A 1 
HETATM 17 C C7 MI4 . . . C 3 15.188 10.39 23.459 1 41.9 ? C7 MI4 1 A 1 
HETATM 18 C C32 MI4 . . . C 3 6.632 2.05 27.338 1 52.6 ? C32 MI4 1 A 1 
HETATM 19 C C23 MI4 . . . C 3 11.739 6.476 28.269 1 49.6 ? C23 MI4 1 A 1 
HETATM 20 C C22 MI4 . . . C 3 13.045 6.183 28.343 1 46.95 ? C22 MI4 1 A 1 
HETATM 21 C C24 MI4 . . . C 3 10.872 6.773 29.453 1 49.87 ? C24 MI4 1 A 1 
HETATM 22 C C25 MI4 . . . C 3 9.878 5.651 29.691 1 51.61 ? C25 MI4 1 A 1 
HETATM 23 C C20 MI4 . . . C 3 13.849 5.893 27.108 1 43.44 ? C20 MI4 1 A 1 
HETATM 24 C C26 MI4 . . . C 3 8.754 5.718 28.648 1 51.11 ? C26 MI4 1 A 1 
HETATM 25 C C17 MI4 . . . C 3 14.808 7.079 26.759 1 41.5 ? C17 MI4 1 A 1 
HETATM 26 C C29 MI4 . . . C 3 8.436 4.383 27.944 1 51.89 ? C29 MI4 1 A 1 
HETATM 27 C C3 MI4 . . . C 3 15.131 13.138 19.287 1 38.48 ? C3 MI4 1 A 1 
HETATM 28 C C9 MI4 . . . C 3 14.634 11.353 25.758 1 36.98 ? C9 MI4 1 A 1 
HETATM 29 C C6 MI4 . . . C 3 14.846 11.608 22.694 1 39.23 ? C6 MI4 1 A 1 
HETATM 30 C C36 MI4 . . . C 3 8.054 2.86 25.378 1 51.33 ? C36 MI4 1 A 1 
HETATM 31 C C38 MI4 . . . C 3 9.117 1.527 27.281 1 50.89 ? C38 MI4 1 A 1 
HETATM 32 C C5 MI4 . . . C 3 14.863 11.666 21.342 1 40.11 ? C5 MI4 1 A 1 
HETATM 33 C C10 MI4 . . . C 3 15.206 10.421 20.471 1 38.06 ? C10 MI4 1 A 1 
HETATM 34 C C1 MI4 . . . C 3 15.197 10.598 18.936 1 37.58 ? C1 MI4 1 A 1 
HETATM 35 C C4 MI4 . . . C 3 14.501 12.999 20.67 1 37.42 ? C4 MI4 1 A 1 
HETATM 36 C C2 MI4 . . . C 3 14.75 11.962 18.45 1 39.39 ? C2 MI4 1 A 1 
HETATM 37 O O3 MI4 . . . C 3 9.32 5.799 30.98 1 51.78 ? O3 MI4 1 A 1 
HETATM 38 O O1 MI4 . . . C 3 14.368 9.579 18.408 1 41.16 ? O1 MI4 1 A 1 
HETATM 39 O O2 MI4 . . . C 3 16.54 13.201 19.428 1 36.33 ? O2 MI4 1 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           39 
#