data_2ZN9
#
_model_server_result.job_id            RhhHAbx-PjTrb9k14uyeVA 
_model_server_result.datetime_utc      '2024-11-21 23:26:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zn9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1}' 
#
_entry.id    2ZN9 
#
_exptl.entry_id    2ZN9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NONAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZN9 
_cell.length_a            72.024 
_cell.length_b            72.024 
_cell.length_c            91.663 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZN9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,C,D,E,F,G,L 2 1 
B,H,I,J,K,M 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_565 -y,x+1,z+1/4 0 -1 0 1 0 0 0 0 1 0 72.024 22.91575 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H38 O10' 
_chem_comp.formula_weight    414.488 
_chem_comp.id                2PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NONAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 2PE sing 87 n n 
O1 HO1 2PE sing 88 n n 
C2 C3 2PE sing 89 n n 
C2 H21 2PE sing 90 n n 
C2 H22 2PE sing 91 n n 
C3 O4 2PE sing 92 n n 
C3 H31 2PE sing 93 n n 
C3 H32 2PE sing 94 n n 
O4 C5 2PE sing 95 n n 
C5 C6 2PE sing 96 n n 
C5 H51 2PE sing 97 n n 
C5 H52 2PE sing 98 n n 
C6 O7 2PE sing 99 n n 
C6 H61 2PE sing 100 n n 
C6 H62 2PE sing 101 n n 
O7 C8 2PE sing 102 n n 
C8 C9 2PE sing 103 n n 
C8 H81 2PE sing 104 n n 
C8 H82 2PE sing 105 n n 
C9 O10 2PE sing 106 n n 
C9 H91 2PE sing 107 n n 
C9 H92 2PE sing 108 n n 
O10 C11 2PE sing 109 n n 
C11 C12 2PE sing 110 n n 
C11 H111 2PE sing 111 n n 
C11 H112 2PE sing 112 n n 
C12 O13 2PE sing 113 n n 
C12 H121 2PE sing 114 n n 
C12 H122 2PE sing 115 n n 
O13 C14 2PE sing 116 n n 
C14 C15 2PE sing 117 n n 
C14 H141 2PE sing 118 n n 
C14 H142 2PE sing 119 n n 
C15 O16 2PE sing 120 n n 
C15 H151 2PE sing 121 n n 
C15 H152 2PE sing 122 n n 
O16 C17 2PE sing 123 n n 
C17 C18 2PE sing 124 n n 
C17 H171 2PE sing 125 n n 
C17 H172 2PE sing 126 n n 
C18 O19 2PE sing 127 n n 
C18 H181 2PE sing 128 n n 
C18 H182 2PE sing 129 n n 
O19 C20 2PE sing 130 n n 
C20 C21 2PE sing 131 n n 
C20 H201 2PE sing 132 n n 
C20 H202 2PE sing 133 n n 
C21 O22 2PE sing 134 n n 
C21 H211 2PE sing 135 n n 
C21 H212 2PE sing 136 n n 
O22 C23 2PE sing 137 n n 
C23 C24 2PE sing 138 n n 
C23 H231 2PE sing 139 n n 
C23 H232 2PE sing 140 n n 
C24 O25 2PE sing 141 n n 
C24 H241 2PE sing 142 n n 
C24 H242 2PE sing 143 n n 
O25 C26 2PE sing 144 n n 
C26 C27 2PE sing 145 n n 
C26 H261 2PE sing 146 n n 
C26 H262 2PE sing 147 n n 
C27 O28 2PE sing 148 n n 
C27 H271 2PE sing 149 n n 
C27 H272 2PE sing 150 n n 
O28 HO2 2PE sing 151 n n 
#
_atom_sites.entry_id                     2ZN9 
_atom_sites.fract_transf_matrix[1][1]    0.013884 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013884 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01091 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 901 901 CA CA . 
D 2 CA A 1 902 902 CA CA . 
E 2 CA A 1 903 903 CA CA . 
F 2 CA A 1 904 904 CA CA . 
G 3 2PE A 1 1 1 2PE 2PE . 
H 2 CA B 1 901 901 CA CA . 
I 2 CA B 1 902 902 CA CA . 
J 2 CA B 1 903 903 CA CA . 
K 4 12P B 1 2 2 12P 12P . 
L 5 HOH A 1 905 19 HOH HOH . 
L 5 HOH A 2 906 20 HOH HOH . 
L 5 HOH A 3 907 21 HOH HOH . 
L 5 HOH A 4 908 22 HOH HOH . 
L 5 HOH A 5 909 23 HOH HOH . 
L 5 HOH A 6 910 24 HOH HOH . 
L 5 HOH A 7 911 25 HOH HOH . 
L 5 HOH A 8 912 26 HOH HOH . 
L 5 HOH A 9 913 27 HOH HOH . 
L 5 HOH A 10 914 28 HOH HOH . 
L 5 HOH A 11 915 29 HOH HOH . 
L 5 HOH A 12 916 30 HOH HOH . 
L 5 HOH A 13 917 31 HOH HOH . 
L 5 HOH A 14 918 32 HOH HOH . 
L 5 HOH A 15 919 34 HOH HOH . 
L 5 HOH A 16 920 35 HOH HOH . 
L 5 HOH A 17 921 36 HOH HOH . 
L 5 HOH A 18 922 37 HOH HOH . 
L 5 HOH A 19 923 38 HOH HOH . 
L 5 HOH A 20 924 40 HOH HOH . 
L 5 HOH A 21 925 41 HOH HOH . 
L 5 HOH A 22 926 42 HOH HOH . 
L 5 HOH A 23 927 45 HOH HOH . 
L 5 HOH A 24 928 46 HOH HOH . 
M 5 HOH B 1 904 33 HOH HOH . 
M 5 HOH B 2 905 44 HOH HOH . 
M 5 HOH B 3 906 1 HOH HOH . 
M 5 HOH B 4 907 2 HOH HOH . 
M 5 HOH B 5 908 3 HOH HOH . 
M 5 HOH B 6 909 4 HOH HOH . 
M 5 HOH B 7 910 5 HOH HOH . 
M 5 HOH B 8 911 6 HOH HOH . 
M 5 HOH B 9 912 7 HOH HOH . 
M 5 HOH B 10 913 8 HOH HOH . 
M 5 HOH B 11 914 9 HOH HOH . 
M 5 HOH B 12 915 10 HOH HOH . 
M 5 HOH B 13 916 11 HOH HOH . 
M 5 HOH B 14 917 12 HOH HOH . 
M 5 HOH B 15 918 13 HOH HOH . 
M 5 HOH B 16 919 14 HOH HOH . 
M 5 HOH B 17 920 15 HOH HOH . 
M 5 HOH B 18 921 16 HOH HOH . 
M 5 HOH B 19 922 17 HOH HOH . 
M 5 HOH B 20 923 18 HOH HOH . 
M 5 HOH B 21 924 43 HOH HOH . 
M 5 HOH B 22 925 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 2PE . . . G 3 -24.089 0.579 7.691 1 59.08 ? O1 2PE 1 A 1 
HETATM 2 C C2 2PE . . . G 3 -22.791 1.211 7.633 1 57.96 ? C2 2PE 1 A 1 
HETATM 3 C C3 2PE . . . G 3 -22.35 1.47 6.188 1 56.39 ? C3 2PE 1 A 1 
HETATM 4 O O4 2PE . . . G 3 -21.027 0.964 5.971 1 55.41 ? O4 2PE 1 A 1 
HETATM 5 C C5 2PE . . . G 3 -20.745 0.444 4.659 1 56.49 ? C5 2PE 1 A 1 
HETATM 6 C C6 2PE . . . G 3 -21.533 -0.828 4.323 1 58.8 ? C6 2PE 1 A 1 
HETATM 7 O O7 2PE . . . G 3 -20.725 -1.942 3.914 1 59.62 ? O7 2PE 1 A 1 
HETATM 8 C C8 2PE . . . G 3 -20.922 -3.11 4.739 1 60.66 ? C8 2PE 1 A 1 
HETATM 9 C C9 2PE . . . G 3 -21.894 -4.137 4.133 1 60.69 ? C9 2PE 1 A 1 
HETATM 10 O O10 2PE . . . G 3 -22.643 -4.828 5.158 1 60.74 ? O10 2PE 1 A 1 
HETATM 11 C C11 2PE . . . G 3 -22.965 -6.189 4.813 1 58.32 ? C11 2PE 1 A 1 
HETATM 12 C C12 2PE . . . G 3 -24.097 -6.789 5.676 1 55.1 ? C12 2PE 1 A 1 
HETATM 13 O O13 2PE . . . G 3 -23.757 -8.017 6.366 1 51.1 ? O13 2PE 1 A 1 
HETATM 14 C C14 2PE . . . G 3 -22.688 -8.776 5.782 1 48.41 ? C14 2PE 1 A 1 
HETATM 15 C C15 2PE . . . G 3 -22.969 -10.267 5.842 1 47.76 ? C15 2PE 1 A 1 
HETATM 16 O O16 2PE . . . G 3 -22.265 -10.993 4.832 1 48.19 ? O16 2PE 1 A 1 
HETATM 17 C C17 2PE . . . G 3 -23.09 -11.831 4.017 1 46.87 ? C17 2PE 1 A 1 
HETATM 18 C C18 2PE . . . G 3 -22.508 -11.937 2.596 1 47.07 ? C18 2PE 1 A 1 
HETATM 19 O O19 2PE . . . G 3 -23.325 -11.236 1.633 1 47.94 ? O19 2PE 1 A 1 
HETATM 20 C C20 2PE . . . G 3 -23.109 -11.632 0.262 1 46.41 ? C20 2PE 1 A 1 
HETATM 21 C C21 2PE . . . G 3 -24.43 -11.535 -0.494 1 45.56 ? C21 2PE 1 A 1 
HETATM 22 O O22 2PE . . . G 3 -24.378 -12.139 -1.787 1 46.6 ? O22 2PE 1 A 1 
HETATM 23 C C23 2PE . . . G 3 -25.119 -13.355 -1.973 1 44.59 ? C23 2PE 1 A 1 
HETATM 24 C C24 2PE . . . G 3 -24.406 -14.194 -3.035 1 45.06 ? C24 2PE 1 A 1 
HETATM 25 O O25 2PE . . . G 3 -25.116 -15.414 -3.316 1 47.07 ? O25 2PE 1 A 1 
HETATM 26 C C26 2PE . . . G 3 -24.336 -16.488 -3.875 1 46.21 ? C26 2PE 1 A 1 
HETATM 27 C C27 2PE . . . G 3 -23.674 -16.161 -5.222 1 47.54 ? C27 2PE 1 A 1 
HETATM 28 O O28 2PE . . . G 3 -22.822 -17.248 -5.633 1 49.11 ? O28 2PE 1 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#