data_2ZNH # _model_server_result.job_id wY2nL8acu2lKvYOYdFbXTw _model_server_result.datetime_utc '2025-08-31 03:53:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2znh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 2ZNH # _exptl.entry_id 2ZNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.62 _cell.angle_gamma 90 _cell.entry_id 2ZNH _cell.length_a 71.35 _cell.length_b 99.88 _cell.length_c 92.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 501 NAG 2 n C NAG 2 C 2 NAG A 502 NAG 3 n D NAG 1 D 1 NAG A 601 NAG 3 n D NAG 2 D 2 NAG A 602 NAG 3 n D MAN 3 D 3 MAN A 603 MAN 3 n E NAG 1 E 1 NAG B 601 NAG 3 n E NAG 2 E 2 NAG B 602 NAG 3 n E MAN 3 E 3 MAN B 603 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 21 A CYS 21 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 247 A CYS 247 1_555 A SG CYS 430 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 8 B CYS 8 1_555 B SG CYS 128 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 21 B CYS 21 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 247 B CYS 247 1_555 B SG CYS 430 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 96 A ASN 96 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale2 A ND2 ASN 155 A ASN 155 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 192 A ASN 192 1_555 F C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.139 ? covale ? covale4 B ND2 ASN 96 B ASN 96 1_555 G C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 155 B ASN 155 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 281 n n C1 O1 NAG sing 282 n n C1 O5 NAG sing 283 n n C1 H1 NAG sing 284 n n C2 C3 NAG sing 285 n n C2 N2 NAG sing 286 n n C2 H2 NAG sing 287 n n C3 C4 NAG sing 288 n n C3 O3 NAG sing 289 n n C3 H3 NAG sing 290 n n C4 C5 NAG sing 291 n n C4 O4 NAG sing 292 n n C4 H4 NAG sing 293 n n C5 C6 NAG sing 294 n n C5 O5 NAG sing 295 n n C5 H5 NAG sing 296 n n C6 O6 NAG sing 297 n n C6 H61 NAG sing 298 n n C6 H62 NAG sing 299 n n C7 C8 NAG sing 300 n n C7 N2 NAG sing 301 n n C7 O7 NAG doub 302 n n C8 H81 NAG sing 303 n n C8 H82 NAG sing 304 n n C8 H83 NAG sing 305 n n N2 HN2 NAG sing 306 n n O1 HO1 NAG sing 307 n n O3 HO3 NAG sing 308 n n O4 HO4 NAG sing 309 n n O6 HO6 NAG sing 310 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2ZNH _atom_sites.fract_transf_matrix[1][1] 0.014015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 701 701 NAG NAG . G 4 NAG B 1 501 501 NAG NAG . H 5 CIT B 1 604 604 CIT CIT . I 5 CIT B 1 605 605 CIT CIT . J 6 HOH A 1 702 702 HOH HOH . J 6 HOH A 2 703 703 HOH HOH . J 6 HOH A 3 704 704 HOH HOH . J 6 HOH A 4 705 705 HOH HOH . J 6 HOH A 5 706 706 HOH HOH . J 6 HOH A 6 707 707 HOH HOH . J 6 HOH A 7 708 708 HOH HOH . J 6 HOH A 8 709 709 HOH HOH . J 6 HOH A 9 710 710 HOH HOH . J 6 HOH A 10 711 711 HOH HOH . J 6 HOH A 11 712 712 HOH HOH . J 6 HOH A 12 713 713 HOH HOH . J 6 HOH A 13 714 714 HOH HOH . J 6 HOH A 14 715 715 HOH HOH . J 6 HOH A 15 716 716 HOH HOH . J 6 HOH A 16 717 717 HOH HOH . J 6 HOH A 17 718 718 HOH HOH . J 6 HOH A 18 719 719 HOH HOH . J 6 HOH A 19 720 720 HOH HOH . J 6 HOH A 20 721 721 HOH HOH . J 6 HOH A 21 722 722 HOH HOH . J 6 HOH A 22 723 723 HOH HOH . J 6 HOH A 23 724 724 HOH HOH . J 6 HOH A 24 725 725 HOH HOH . J 6 HOH A 25 726 726 HOH HOH . J 6 HOH A 26 727 727 HOH HOH . J 6 HOH A 27 728 728 HOH HOH . J 6 HOH A 28 729 729 HOH HOH . J 6 HOH A 29 730 730 HOH HOH . J 6 HOH A 30 731 731 HOH HOH . J 6 HOH A 31 732 732 HOH HOH . J 6 HOH A 32 733 733 HOH HOH . J 6 HOH A 33 734 734 HOH HOH . J 6 HOH A 34 735 735 HOH HOH . J 6 HOH A 35 736 736 HOH HOH . J 6 HOH A 36 737 737 HOH HOH . K 6 HOH B 1 606 606 HOH HOH . K 6 HOH B 2 607 607 HOH HOH . K 6 HOH B 3 608 608 HOH HOH . K 6 HOH B 4 609 609 HOH HOH . K 6 HOH B 5 610 610 HOH HOH . K 6 HOH B 6 611 611 HOH HOH . K 6 HOH B 7 612 612 HOH HOH . K 6 HOH B 8 613 613 HOH HOH . K 6 HOH B 9 614 614 HOH HOH . K 6 HOH B 10 615 615 HOH HOH . K 6 HOH B 11 616 616 HOH HOH . K 6 HOH B 12 617 617 HOH HOH . K 6 HOH B 13 618 618 HOH HOH . K 6 HOH B 14 619 619 HOH HOH . K 6 HOH B 15 620 620 HOH HOH . K 6 HOH B 16 621 621 HOH HOH . K 6 HOH B 17 622 622 HOH HOH . K 6 HOH B 18 623 623 HOH HOH . K 6 HOH B 19 624 624 HOH HOH . K 6 HOH B 20 625 625 HOH HOH . K 6 HOH B 21 626 626 HOH HOH . K 6 HOH B 22 627 627 HOH HOH . K 6 HOH B 23 628 628 HOH HOH . K 6 HOH B 24 629 629 HOH HOH . K 6 HOH B 25 630 630 HOH HOH . K 6 HOH B 26 631 631 HOH HOH . K 6 HOH B 27 632 632 HOH HOH . K 6 HOH B 28 633 633 HOH HOH . K 6 HOH B 29 634 634 HOH HOH . K 6 HOH B 30 635 635 HOH HOH . K 6 HOH B 31 636 636 HOH HOH . K 6 HOH B 32 637 637 HOH HOH . K 6 HOH B 33 638 638 HOH HOH . K 6 HOH B 34 639 639 HOH HOH . K 6 HOH B 35 640 640 HOH HOH . K 6 HOH B 36 641 641 HOH HOH . K 6 HOH B 37 642 642 HOH HOH . K 6 HOH B 38 643 643 HOH HOH . K 6 HOH B 39 644 644 HOH HOH . K 6 HOH B 40 645 645 HOH HOH . K 6 HOH B 41 646 646 HOH HOH . K 6 HOH B 42 647 647 HOH HOH . K 6 HOH B 43 648 648 HOH HOH . K 6 HOH B 44 649 649 HOH HOH . K 6 HOH B 45 650 650 HOH HOH . K 6 HOH B 46 651 651 HOH HOH . K 6 HOH B 47 652 652 HOH HOH . K 6 HOH B 48 653 653 HOH HOH . K 6 HOH B 49 654 654 HOH HOH . K 6 HOH B 50 655 655 HOH HOH . K 6 HOH B 51 656 656 HOH HOH . K 6 HOH B 52 657 657 HOH HOH . K 6 HOH B 53 658 658 HOH HOH . K 6 HOH B 54 659 659 HOH HOH . K 6 HOH B 55 660 660 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 48.781 -21.681 7.931 1 77.53 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . F 4 50.317 -21.878 7.803 1 79.83 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . F 4 50.742 -22.238 6.371 1 80.66 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . F 4 49.869 -23.364 5.811 1 81.15 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . F 4 48.405 -22.907 5.904 1 81.24 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . F 4 47.379 -23.852 5.268 1 81.03 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . F 4 52.273 -20.661 8.525 1 82.03 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . F 4 53.277 -20.121 7.517 1 82.04 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . F 4 50.986 -20.647 8.181 1 81.39 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . F 4 52.109 -22.622 6.341 1 80.26 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . F 4 50.224 -23.623 4.458 1 82.61 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . F 4 48.054 -22.741 7.293 1 80.16 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . F 4 46.051 -23.479 5.619 1 81.98 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . F 4 52.673 -21.083 9.615 1 82.18 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 724 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #