data_2ZNK
#
_model_server_result.job_id            dmK30TGvBUOZxbTDrviVzQ 
_model_server_result.datetime_utc      '2024-10-18 16:29:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2znk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3003}' 
#
_entry.id    2ZNK 
#
_exptl.entry_id    2ZNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.5 
_cell.angle_gamma         90 
_cell.entry_id            2ZNK 
_cell.length_a            70.2 
_cell.length_b            71.6 
_cell.length_c            72.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2ZNK 
_atom_sites.fract_transf_matrix[1][1]    0.014247 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002646 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013961 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 31U H 1 3001 3001 31U 31U . 
E 5 NA H 1 3002 3002 NA NA . 
F 5 NA H 1 3003 3003 NA NA . 
G 6 HOH L 1 4007 4007 HOH HOH . 
G 6 HOH L 2 4008 4008 HOH HOH . 
G 6 HOH L 3 4020 4020 HOH HOH . 
G 6 HOH L 4 4025 4025 HOH HOH . 
G 6 HOH L 5 4027 4027 HOH HOH . 
G 6 HOH L 6 4032 4032 HOH HOH . 
G 6 HOH L 7 4035 4035 HOH HOH . 
G 6 HOH L 8 4044 4044 HOH HOH . 
G 6 HOH L 9 4058 4058 HOH HOH . 
G 6 HOH L 10 4069 4069 HOH HOH . 
G 6 HOH L 11 4071 4071 HOH HOH . 
G 6 HOH L 12 4081 4081 HOH HOH . 
G 6 HOH L 13 4087 4087 HOH HOH . 
G 6 HOH L 14 4110 4110 HOH HOH . 
G 6 HOH L 15 4121 4121 HOH HOH . 
G 6 HOH L 16 4122 4122 HOH HOH . 
G 6 HOH L 17 4124 4124 HOH HOH . 
G 6 HOH L 18 4130 4130 HOH HOH . 
G 6 HOH L 19 4135 4135 HOH HOH . 
G 6 HOH L 20 4136 4136 HOH HOH . 
G 6 HOH L 21 4144 4144 HOH HOH . 
G 6 HOH L 22 4147 4147 HOH HOH . 
G 6 HOH L 23 4163 4163 HOH HOH . 
G 6 HOH L 24 4168 4168 HOH HOH . 
G 6 HOH L 25 4179 4179 HOH HOH . 
G 6 HOH L 26 4182 4182 HOH HOH . 
G 6 HOH L 27 4185 4185 HOH HOH . 
G 6 HOH L 28 4197 4197 HOH HOH . 
G 6 HOH L 29 4207 4207 HOH HOH . 
G 6 HOH L 30 4212 4212 HOH HOH . 
G 6 HOH L 31 4217 4217 HOH HOH . 
G 6 HOH L 32 4222 4222 HOH HOH . 
H 6 HOH H 1 4001 4001 HOH HOH . 
H 6 HOH H 2 4002 4002 HOH HOH . 
H 6 HOH H 3 4003 4003 HOH HOH . 
H 6 HOH H 4 4004 4004 HOH HOH . 
H 6 HOH H 5 4005 4005 HOH HOH . 
H 6 HOH H 6 4006 4006 HOH HOH . 
H 6 HOH H 7 4009 4009 HOH HOH . 
H 6 HOH H 8 4010 4010 HOH HOH . 
H 6 HOH H 9 4011 4011 HOH HOH . 
H 6 HOH H 10 4012 4012 HOH HOH . 
H 6 HOH H 11 4013 4013 HOH HOH . 
H 6 HOH H 12 4014 4014 HOH HOH . 
H 6 HOH H 13 4015 4015 HOH HOH . 
H 6 HOH H 14 4016 4016 HOH HOH . 
H 6 HOH H 15 4017 4017 HOH HOH . 
H 6 HOH H 16 4018 4018 HOH HOH . 
H 6 HOH H 17 4019 4019 HOH HOH . 
H 6 HOH H 18 4021 4021 HOH HOH . 
H 6 HOH H 19 4022 4022 HOH HOH . 
H 6 HOH H 20 4023 4023 HOH HOH . 
H 6 HOH H 21 4024 4024 HOH HOH . 
H 6 HOH H 22 4026 4026 HOH HOH . 
H 6 HOH H 23 4028 4028 HOH HOH . 
H 6 HOH H 24 4029 4029 HOH HOH . 
H 6 HOH H 25 4030 4030 HOH HOH . 
H 6 HOH H 26 4031 4031 HOH HOH . 
H 6 HOH H 27 4033 4033 HOH HOH . 
H 6 HOH H 28 4034 4034 HOH HOH . 
H 6 HOH H 29 4036 4036 HOH HOH . 
H 6 HOH H 30 4037 4037 HOH HOH . 
H 6 HOH H 31 4038 4038 HOH HOH . 
H 6 HOH H 32 4039 4039 HOH HOH . 
H 6 HOH H 33 4040 4040 HOH HOH . 
H 6 HOH H 34 4041 4041 HOH HOH . 
H 6 HOH H 35 4042 4042 HOH HOH . 
H 6 HOH H 36 4043 4043 HOH HOH . 
H 6 HOH H 37 4045 4045 HOH HOH . 
H 6 HOH H 38 4046 4046 HOH HOH . 
H 6 HOH H 39 4047 4047 HOH HOH . 
H 6 HOH H 40 4048 4048 HOH HOH . 
H 6 HOH H 41 4049 4049 HOH HOH . 
H 6 HOH H 42 4050 4050 HOH HOH . 
H 6 HOH H 43 4051 4051 HOH HOH . 
H 6 HOH H 44 4052 4052 HOH HOH . 
H 6 HOH H 45 4053 4053 HOH HOH . 
H 6 HOH H 46 4054 4054 HOH HOH . 
H 6 HOH H 47 4055 4055 HOH HOH . 
H 6 HOH H 48 4056 4056 HOH HOH . 
H 6 HOH H 49 4057 4057 HOH HOH . 
H 6 HOH H 50 4059 4059 HOH HOH . 
H 6 HOH H 51 4060 4060 HOH HOH . 
H 6 HOH H 52 4061 4061 HOH HOH . 
H 6 HOH H 53 4062 4062 HOH HOH . 
H 6 HOH H 54 4063 4063 HOH HOH . 
H 6 HOH H 55 4064 4064 HOH HOH . 
H 6 HOH H 56 4065 4065 HOH HOH . 
H 6 HOH H 57 4066 4066 HOH HOH . 
H 6 HOH H 58 4067 4067 HOH HOH . 
H 6 HOH H 59 4068 4068 HOH HOH . 
H 6 HOH H 60 4070 4070 HOH HOH . 
H 6 HOH H 61 4072 4072 HOH HOH . 
H 6 HOH H 62 4073 4073 HOH HOH . 
H 6 HOH H 63 4074 4074 HOH HOH . 
H 6 HOH H 64 4075 4075 HOH HOH . 
H 6 HOH H 65 4076 4076 HOH HOH . 
H 6 HOH H 66 4077 4077 HOH HOH . 
H 6 HOH H 67 4078 4078 HOH HOH . 
H 6 HOH H 68 4079 4079 HOH HOH . 
H 6 HOH H 69 4080 4080 HOH HOH . 
H 6 HOH H 70 4082 4082 HOH HOH . 
H 6 HOH H 71 4083 4083 HOH HOH . 
H 6 HOH H 72 4084 4084 HOH HOH . 
H 6 HOH H 73 4085 4085 HOH HOH . 
H 6 HOH H 74 4086 4086 HOH HOH . 
H 6 HOH H 75 4088 4088 HOH HOH . 
H 6 HOH H 76 4089 4089 HOH HOH . 
H 6 HOH H 77 4090 4090 HOH HOH . 
H 6 HOH H 78 4091 4091 HOH HOH . 
H 6 HOH H 79 4092 4092 HOH HOH . 
H 6 HOH H 80 4093 4093 HOH HOH . 
H 6 HOH H 81 4094 4094 HOH HOH . 
H 6 HOH H 82 4095 4095 HOH HOH . 
H 6 HOH H 83 4096 4096 HOH HOH . 
H 6 HOH H 84 4097 4097 HOH HOH . 
H 6 HOH H 85 4099 4099 HOH HOH . 
H 6 HOH H 86 4101 4101 HOH HOH . 
H 6 HOH H 87 4102 4102 HOH HOH . 
H 6 HOH H 88 4103 4103 HOH HOH . 
H 6 HOH H 89 4104 4104 HOH HOH . 
H 6 HOH H 90 4106 4106 HOH HOH . 
H 6 HOH H 91 4107 4107 HOH HOH . 
H 6 HOH H 92 4108 4108 HOH HOH . 
H 6 HOH H 93 4109 4109 HOH HOH . 
H 6 HOH H 94 4112 4112 HOH HOH . 
H 6 HOH H 95 4113 4113 HOH HOH . 
H 6 HOH H 96 4114 4114 HOH HOH . 
H 6 HOH H 97 4115 4115 HOH HOH . 
H 6 HOH H 98 4116 4116 HOH HOH . 
H 6 HOH H 99 4117 4117 HOH HOH . 
H 6 HOH H 100 4118 4118 HOH HOH . 
H 6 HOH H 101 4119 4119 HOH HOH . 
H 6 HOH H 102 4120 4120 HOH HOH . 
H 6 HOH H 103 4123 4123 HOH HOH . 
H 6 HOH H 104 4125 4125 HOH HOH . 
H 6 HOH H 105 4126 4126 HOH HOH . 
H 6 HOH H 106 4127 4127 HOH HOH . 
H 6 HOH H 107 4128 4128 HOH HOH . 
H 6 HOH H 108 4129 4129 HOH HOH . 
H 6 HOH H 109 4131 4131 HOH HOH . 
H 6 HOH H 110 4132 4132 HOH HOH . 
H 6 HOH H 111 4133 4133 HOH HOH . 
H 6 HOH H 112 4134 4134 HOH HOH . 
H 6 HOH H 113 4137 4137 HOH HOH . 
H 6 HOH H 114 4138 4138 HOH HOH . 
H 6 HOH H 115 4139 4139 HOH HOH . 
H 6 HOH H 116 4140 4140 HOH HOH . 
H 6 HOH H 117 4141 4141 HOH HOH . 
H 6 HOH H 118 4142 4142 HOH HOH . 
H 6 HOH H 119 4143 4143 HOH HOH . 
H 6 HOH H 120 4145 4145 HOH HOH . 
H 6 HOH H 121 4146 4146 HOH HOH . 
H 6 HOH H 122 4148 4148 HOH HOH . 
H 6 HOH H 123 4149 4149 HOH HOH . 
H 6 HOH H 124 4150 4150 HOH HOH . 
H 6 HOH H 125 4151 4151 HOH HOH . 
H 6 HOH H 126 4152 4152 HOH HOH . 
H 6 HOH H 127 4153 4153 HOH HOH . 
H 6 HOH H 128 4154 4154 HOH HOH . 
H 6 HOH H 129 4156 4156 HOH HOH . 
H 6 HOH H 130 4157 4157 HOH HOH . 
H 6 HOH H 131 4158 4158 HOH HOH . 
H 6 HOH H 132 4159 4159 HOH HOH . 
H 6 HOH H 133 4160 4160 HOH HOH . 
H 6 HOH H 134 4161 4161 HOH HOH . 
H 6 HOH H 135 4162 4162 HOH HOH . 
H 6 HOH H 136 4164 4164 HOH HOH . 
H 6 HOH H 137 4165 4165 HOH HOH . 
H 6 HOH H 138 4166 4166 HOH HOH . 
H 6 HOH H 139 4167 4167 HOH HOH . 
H 6 HOH H 140 4169 4169 HOH HOH . 
H 6 HOH H 141 4170 4170 HOH HOH . 
H 6 HOH H 142 4171 4171 HOH HOH . 
H 6 HOH H 143 4172 4172 HOH HOH . 
H 6 HOH H 144 4173 4173 HOH HOH . 
H 6 HOH H 145 4174 4174 HOH HOH . 
H 6 HOH H 146 4175 4175 HOH HOH . 
H 6 HOH H 147 4176 4176 HOH HOH . 
H 6 HOH H 148 4177 4177 HOH HOH . 
H 6 HOH H 149 4178 4178 HOH HOH . 
H 6 HOH H 150 4180 4180 HOH HOH . 
H 6 HOH H 151 4181 4181 HOH HOH . 
H 6 HOH H 152 4183 4183 HOH HOH . 
H 6 HOH H 153 4184 4184 HOH HOH . 
H 6 HOH H 154 4186 4186 HOH HOH . 
H 6 HOH H 155 4187 4187 HOH HOH . 
H 6 HOH H 156 4188 4188 HOH HOH . 
H 6 HOH H 157 4189 4189 HOH HOH . 
H 6 HOH H 158 4190 4190 HOH HOH . 
H 6 HOH H 159 4191 4191 HOH HOH . 
H 6 HOH H 160 4192 4192 HOH HOH . 
H 6 HOH H 161 4193 4193 HOH HOH . 
H 6 HOH H 162 4194 4194 HOH HOH . 
H 6 HOH H 163 4195 4195 HOH HOH . 
H 6 HOH H 164 4196 4196 HOH HOH . 
H 6 HOH H 165 4198 4198 HOH HOH . 
H 6 HOH H 166 4200 4200 HOH HOH . 
H 6 HOH H 167 4201 4201 HOH HOH . 
H 6 HOH H 168 4202 4202 HOH HOH . 
H 6 HOH H 169 4203 4203 HOH HOH . 
H 6 HOH H 170 4204 4204 HOH HOH . 
H 6 HOH H 171 4206 4206 HOH HOH . 
H 6 HOH H 172 4208 4208 HOH HOH . 
H 6 HOH H 173 4209 4209 HOH HOH . 
H 6 HOH H 174 4210 4210 HOH HOH . 
H 6 HOH H 175 4211 4211 HOH HOH . 
H 6 HOH H 176 4213 4213 HOH HOH . 
H 6 HOH H 177 4216 4216 HOH HOH . 
H 6 HOH H 178 4218 4218 HOH HOH . 
H 6 HOH H 179 4219 4219 HOH HOH . 
H 6 HOH H 180 4221 4221 HOH HOH . 
H 6 HOH H 181 4223 4223 HOH HOH . 
H 6 HOH H 182 4224 4224 HOH HOH . 
H 6 HOH H 183 4225 4225 HOH HOH . 
H 6 HOH H 184 4226 4226 HOH HOH . 
I 6 HOH I 1 4100 4100 HOH HOH . 
I 6 HOH I 2 4105 4105 HOH HOH . 
I 6 HOH I 3 4111 4111 HOH HOH . 
I 6 HOH I 4 4155 4155 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               18.195 
_atom_site.Cartn_y               -15.479 
_atom_site.Cartn_z               37.969 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           3003 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#