data_2ZNP # _model_server_result.job_id aKGvqYbvGmkoo7PdUvglQA _model_server_result.datetime_utc '2024-11-24 11:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2znp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":920}' # _entry.id 2ZNP # _exptl.entry_id 2ZNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.48 _cell.angle_gamma 90 _cell.entry_id 2ZNP _cell.length_a 39.492 _cell.length_b 93.149 _cell.length_c 96.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 70 n n C5 C4 B7G sing 71 n n C5 C6 B7G sing 72 n n C5 H5 B7G sing 73 n n O5 C1 B7G sing 74 n n C1 C2 B7G sing 75 n n C1 O1 B7G sing 76 n n C1 H1 B7G sing 77 n n C2 C3 B7G sing 78 n n C2 O2 B7G sing 79 n n C2 H2 B7G sing 80 n n C3 C4 B7G sing 81 n n C3 O3 B7G sing 82 n n C3 H3 B7G sing 83 n n C4 O4 B7G sing 84 n n C4 H4 B7G sing 85 n n C6 O6 B7G sing 86 n n C6 H61 B7G sing 87 n n C6 H62 B7G sing 88 n n O1 C7 B7G sing 89 n n C7 C8 B7G sing 90 n n C7 H71 B7G sing 91 n n C7 H72 B7G sing 92 n n C8 C9 B7G sing 93 n n C8 H81 B7G sing 94 n n C8 H82 B7G sing 95 n n C9 C10 B7G sing 96 n n C9 H91 B7G sing 97 n n C9 H92 B7G sing 98 n n C10 C11 B7G sing 99 n n C10 H101 B7G sing 100 n n C10 H102 B7G sing 101 n n C11 C12 B7G sing 102 n n C11 H111 B7G sing 103 n n C11 H112 B7G sing 104 n n C12 C13 B7G sing 105 n n C12 H121 B7G sing 106 n n C12 H122 B7G sing 107 n n O2 HO2 B7G sing 108 n n O3 HO3 B7G sing 109 n n O4 HO4 B7G sing 110 n n O6 HO6 B7G sing 111 n n C13 H131 B7G sing 112 n n C13 H132 B7G sing 113 n n C13 H133 B7G sing 114 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2ZNP _atom_sites.fract_transf_matrix[1][1] 0.025322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 921 921 B7G B7G . D 3 K55 A 1 922 922 K55 204 . E 2 B7G B 1 920 920 B7G B7G . F 3 K55 B 1 923 923 K55 204 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1002 1002 HOH HOH . H 4 HOH B 1 1003 1003 HOH HOH . H 4 HOH B 2 1004 1004 HOH HOH . H 4 HOH B 3 1005 1005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . E 2 22.994 -18.673 23.02 1 60.44 ? C5 B7G 920 B 1 HETATM 2 O O5 B7G . . . E 2 22.688 -19.649 21.993 1 61 ? O5 B7G 920 B 1 HETATM 3 C C1 B7G . . . E 2 23.505 -20.849 22.149 1 59.63 ? C1 B7G 920 B 1 HETATM 4 C C2 B7G . . . E 2 24.987 -20.508 22.013 1 61.1 ? C2 B7G 920 B 1 HETATM 5 C C3 B7G . . . E 2 25.329 -19.503 23.121 1 62.13 ? C3 B7G 920 B 1 HETATM 6 C C4 B7G . . . E 2 24.451 -18.253 22.924 1 61.24 ? C4 B7G 920 B 1 HETATM 7 C C6 B7G . . . E 2 22.116 -17.435 22.842 1 59.91 ? C6 B7G 920 B 1 HETATM 8 O O1 B7G . . . E 2 23.16 -21.805 21.14 1 56.58 ? O1 B7G 920 B 1 HETATM 9 C C7 B7G . . . E 2 21.767 -22.021 21.316 1 52.43 ? C7 B7G 920 B 1 HETATM 10 C C8 B7G . . . E 2 21.183 -23.015 20.313 1 49.12 ? C8 B7G 920 B 1 HETATM 11 C C9 B7G . . . E 2 19.706 -23.018 20.635 1 46.3 ? C9 B7G 920 B 1 HETATM 12 C C10 B7G . . . E 2 18.894 -23.908 19.734 1 43.67 ? C10 B7G 920 B 1 HETATM 13 C C11 B7G . . . E 2 17.46 -23.683 20.193 1 43.72 ? C11 B7G 920 B 1 HETATM 14 C C12 B7G . . . E 2 16.487 -24.482 19.36 1 44.99 ? C12 B7G 920 B 1 HETATM 15 O O2 B7G . . . E 2 25.773 -21.7 22.164 1 61.24 ? O2 B7G 920 B 1 HETATM 16 O O3 B7G . . . E 2 26.719 -19.144 23.034 1 64.48 ? O3 B7G 920 B 1 HETATM 17 O O4 B7G . . . E 2 24.719 -17.288 23.953 1 60.68 ? O4 B7G 920 B 1 HETATM 18 O O6 B7G . . . E 2 20.73 -17.792 22.947 1 59.17 ? O6 B7G 920 B 1 HETATM 19 C C13 B7G . . . E 2 15.078 -24.191 19.855 1 43.94 ? C13 B7G 920 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #