data_2ZNP # _model_server_result.job_id tApFEXy1QcB-kSiMSTwqOw _model_server_result.datetime_utc '2024-11-24 11:43:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2znp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":922}' # _entry.id 2ZNP # _exptl.entry_id 2ZNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.48 _cell.angle_gamma 90 _cell.entry_id 2ZNP _cell.length_a 39.492 _cell.length_b 93.149 _cell.length_c 96.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H27 F4 N O4' _chem_comp.formula_weight 469.469 _chem_comp.id K55 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-2-{4-butoxy-3-[(2-fluoro-4-trifluoromethylbenzoylamino)methyl]benzyl} butyric acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C1 K55 sing 218 n n O26 C1 K55 doub 219 n n C1 C2 K55 sing 220 n n C2 C3 K55 sing 221 n n C2 C5 K55 sing 222 n n C3 C4 K55 sing 223 n n C5 C6 K55 sing 224 n n C6 C7 K55 doub 225 n y C6 C11 K55 sing 226 n y C7 C8 K55 sing 227 n y C8 C9 K55 doub 228 n y C8 C12 K55 sing 229 n n C9 C10 K55 sing 230 n y C9 O33 K55 sing 231 n n C10 C11 K55 doub 232 n y O33 C21 K55 sing 233 n n C21 C22 K55 sing 234 n n C22 C23 K55 sing 235 n n C23 C24 K55 sing 236 n n C12 N27 K55 sing 237 n n N27 C13 K55 sing 238 n n C13 O28 K55 doub 239 n n C13 C14 K55 sing 240 n n C14 C15 K55 doub 241 n y C14 C19 K55 sing 242 n y C15 C16 K55 sing 243 n y C15 F29 K55 sing 244 n n C16 C17 K55 doub 245 n y C17 C18 K55 sing 246 n y C17 C20 K55 sing 247 n n C18 C19 K55 doub 248 n y C20 F30 K55 sing 249 n n C20 F31 K55 sing 250 n n C20 F32 K55 sing 251 n n O25 HO25 K55 sing 252 n n C2 H2 K55 sing 253 n n C3 H3 K55 sing 254 n n C3 H3A K55 sing 255 n n C4 H4 K55 sing 256 n n C4 H4A K55 sing 257 n n C4 H4B K55 sing 258 n n C5 H5 K55 sing 259 n n C5 H5A K55 sing 260 n n C7 H7 K55 sing 261 n n C10 H10 K55 sing 262 n n C11 H11 K55 sing 263 n n C21 H21 K55 sing 264 n n C21 H21A K55 sing 265 n n C22 H22 K55 sing 266 n n C22 H22A K55 sing 267 n n C23 H23 K55 sing 268 n n C23 H23A K55 sing 269 n n C24 H24 K55 sing 270 n n C24 H24A K55 sing 271 n n C24 H24B K55 sing 272 n n C12 H12 K55 sing 273 n n C12 H12A K55 sing 274 n n N27 HN27 K55 sing 275 n n C16 H16 K55 sing 276 n n C18 H18 K55 sing 277 n n C19 H19 K55 sing 278 n n # _atom_sites.entry_id 2ZNP _atom_sites.fract_transf_matrix[1][1] 0.025322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 921 921 B7G B7G . D 3 K55 A 1 922 922 K55 204 . E 2 B7G B 1 920 920 B7G B7G . F 3 K55 B 1 923 923 K55 204 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1002 1002 HOH HOH . H 4 HOH B 1 1003 1003 HOH HOH . H 4 HOH B 2 1004 1004 HOH HOH . H 4 HOH B 3 1005 1005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 K55 . . . D 3 20.231 -1.923 34.169 1 39.65 ? O25 K55 922 A 1 HETATM 2 O O26 K55 . . . D 3 18.264 -2.975 34.107 1 38.79 ? O26 K55 922 A 1 HETATM 3 C C1 K55 . . . D 3 18.977 -2.119 34.603 1 39.81 ? C1 K55 922 A 1 HETATM 4 C C2 K55 . . . D 3 18.637 -1.195 35.736 1 39.89 ? C2 K55 922 A 1 HETATM 5 C C3 K55 . . . D 3 19.28 -1.772 37.042 1 39.42 ? C3 K55 922 A 1 HETATM 6 C C4 K55 . . . D 3 20.325 -0.895 37.738 1 36.48 ? C4 K55 922 A 1 HETATM 7 C C5 K55 . . . D 3 19.168 0.187 35.373 1 39.03 ? C5 K55 922 A 1 HETATM 8 C C6 K55 . . . D 3 18.243 1.355 35.542 1 39.34 ? C6 K55 922 A 1 HETATM 9 C C7 K55 . . . D 3 16.899 1.221 35.996 1 38.91 ? C7 K55 922 A 1 HETATM 10 C C8 K55 . . . D 3 16.066 2.366 36.156 1 38.24 ? C8 K55 922 A 1 HETATM 11 C C9 K55 . . . D 3 16.594 3.609 35.87 1 38.78 ? C9 K55 922 A 1 HETATM 12 C C10 K55 . . . D 3 17.912 3.755 35.419 1 39.34 ? C10 K55 922 A 1 HETATM 13 C C11 K55 . . . D 3 18.728 2.639 35.253 1 39.75 ? C11 K55 922 A 1 HETATM 14 O O33 K55 . . . D 3 15.748 4.61 36.055 1 40.41 ? O33 K55 922 A 1 HETATM 15 C C21 K55 . . . D 3 16.195 5.929 35.784 1 41.62 ? C21 K55 922 A 1 HETATM 16 C C22 K55 . . . D 3 15.009 6.801 36.073 1 40.49 ? C22 K55 922 A 1 HETATM 17 C C23 K55 . . . D 3 14.631 7.591 34.877 1 39.6 ? C23 K55 922 A 1 HETATM 18 C C24 K55 . . . D 3 13.246 7.174 34.47 1 39.87 ? C24 K55 922 A 1 HETATM 19 C C12 K55 . . . D 3 14.648 2.174 36.625 1 37.02 ? C12 K55 922 A 1 HETATM 20 N N27 K55 . . . D 3 14.333 2.541 37.981 1 35.62 ? N27 K55 922 A 1 HETATM 21 C C13 K55 . . . D 3 13.048 2.36 38.508 1 32.8 ? C13 K55 922 A 1 HETATM 22 O O28 K55 . . . D 3 12.101 1.891 37.917 1 31.05 ? O28 K55 922 A 1 HETATM 23 C C14 K55 . . . D 3 12.877 2.757 39.866 1 31.87 ? C14 K55 922 A 1 HETATM 24 C C15 K55 . . . D 3 13.536 3.864 40.349 1 32.52 ? C15 K55 922 A 1 HETATM 25 C C16 K55 . . . D 3 13.356 4.245 41.699 1 33.67 ? C16 K55 922 A 1 HETATM 26 C C17 K55 . . . D 3 12.493 3.485 42.555 1 33.23 ? C17 K55 922 A 1 HETATM 27 C C18 K55 . . . D 3 11.836 2.361 42.028 1 31.48 ? C18 K55 922 A 1 HETATM 28 C C19 K55 . . . D 3 12.031 2.004 40.695 1 32.08 ? C19 K55 922 A 1 HETATM 29 C C20 K55 . . . D 3 12.27 3.874 43.992 1 33.39 ? C20 K55 922 A 1 HETATM 30 F F29 K55 . . . D 3 14.352 4.593 39.557 1 32.2 ? F29 K55 922 A 1 HETATM 31 F F30 K55 . . . D 3 10.988 4.122 44.253 1 34.37 ? F30 K55 922 A 1 HETATM 32 F F31 K55 . . . D 3 12.949 5.008 44.363 1 32.41 ? F31 K55 922 A 1 HETATM 33 F F32 K55 . . . D 3 12.593 2.927 44.859 1 34.22 ? F32 K55 922 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #