data_2ZNP # _model_server_result.job_id 3EkNLk1l1ntkjKV-umkHIQ _model_server_result.datetime_utc '2024-11-24 11:27:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2znp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":923}' # _entry.id 2ZNP # _exptl.entry_id 2ZNP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.48 _cell.angle_gamma 90 _cell.entry_id 2ZNP _cell.length_a 39.492 _cell.length_b 93.149 _cell.length_c 96.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H27 F4 N O4' _chem_comp.formula_weight 469.469 _chem_comp.id K55 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-2-{4-butoxy-3-[(2-fluoro-4-trifluoromethylbenzoylamino)methyl]benzyl} butyric acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C1 K55 sing 218 n n O26 C1 K55 doub 219 n n C1 C2 K55 sing 220 n n C2 C3 K55 sing 221 n n C2 C5 K55 sing 222 n n C3 C4 K55 sing 223 n n C5 C6 K55 sing 224 n n C6 C7 K55 doub 225 n y C6 C11 K55 sing 226 n y C7 C8 K55 sing 227 n y C8 C9 K55 doub 228 n y C8 C12 K55 sing 229 n n C9 C10 K55 sing 230 n y C9 O33 K55 sing 231 n n C10 C11 K55 doub 232 n y O33 C21 K55 sing 233 n n C21 C22 K55 sing 234 n n C22 C23 K55 sing 235 n n C23 C24 K55 sing 236 n n C12 N27 K55 sing 237 n n N27 C13 K55 sing 238 n n C13 O28 K55 doub 239 n n C13 C14 K55 sing 240 n n C14 C15 K55 doub 241 n y C14 C19 K55 sing 242 n y C15 C16 K55 sing 243 n y C15 F29 K55 sing 244 n n C16 C17 K55 doub 245 n y C17 C18 K55 sing 246 n y C17 C20 K55 sing 247 n n C18 C19 K55 doub 248 n y C20 F30 K55 sing 249 n n C20 F31 K55 sing 250 n n C20 F32 K55 sing 251 n n O25 HO25 K55 sing 252 n n C2 H2 K55 sing 253 n n C3 H3 K55 sing 254 n n C3 H3A K55 sing 255 n n C4 H4 K55 sing 256 n n C4 H4A K55 sing 257 n n C4 H4B K55 sing 258 n n C5 H5 K55 sing 259 n n C5 H5A K55 sing 260 n n C7 H7 K55 sing 261 n n C10 H10 K55 sing 262 n n C11 H11 K55 sing 263 n n C21 H21 K55 sing 264 n n C21 H21A K55 sing 265 n n C22 H22 K55 sing 266 n n C22 H22A K55 sing 267 n n C23 H23 K55 sing 268 n n C23 H23A K55 sing 269 n n C24 H24 K55 sing 270 n n C24 H24A K55 sing 271 n n C24 H24B K55 sing 272 n n C12 H12 K55 sing 273 n n C12 H12A K55 sing 274 n n N27 HN27 K55 sing 275 n n C16 H16 K55 sing 276 n n C18 H18 K55 sing 277 n n C19 H19 K55 sing 278 n n # _atom_sites.entry_id 2ZNP _atom_sites.fract_transf_matrix[1][1] 0.025322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 921 921 B7G B7G . D 3 K55 A 1 922 922 K55 204 . E 2 B7G B 1 920 920 B7G B7G . F 3 K55 B 1 923 923 K55 204 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1002 1002 HOH HOH . H 4 HOH B 1 1003 1003 HOH HOH . H 4 HOH B 2 1004 1004 HOH HOH . H 4 HOH B 3 1005 1005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 K55 . . . F 3 23.636 -34.406 14.684 1 43.82 ? O25 K55 923 B 1 HETATM 2 O O26 K55 . . . F 3 21.692 -33.26 14.44 1 42.26 ? O26 K55 923 B 1 HETATM 3 C C1 K55 . . . F 3 22.42 -34.186 14.096 1 43.27 ? C1 K55 923 B 1 HETATM 4 C C2 K55 . . . F 3 22.155 -35.166 12.989 1 42.07 ? C2 K55 923 B 1 HETATM 5 C C3 K55 . . . F 3 23.022 -34.648 11.796 1 41.05 ? C3 K55 923 B 1 HETATM 6 C C4 K55 . . . F 3 24.13 -35.568 11.314 1 38.81 ? C4 K55 923 B 1 HETATM 7 C C5 K55 . . . F 3 22.579 -36.563 13.464 1 40.71 ? C5 K55 923 B 1 HETATM 8 C C6 K55 . . . F 3 21.735 -37.775 13.113 1 39.39 ? C6 K55 923 B 1 HETATM 9 C C7 K55 . . . F 3 20.501 -37.738 12.37 1 38.92 ? C7 K55 923 B 1 HETATM 10 C C8 K55 . . . F 3 19.792 -38.971 12.056 1 38.51 ? C8 K55 923 B 1 HETATM 11 C C9 K55 . . . F 3 20.345 -40.177 12.486 1 38.92 ? C9 K55 923 B 1 HETATM 12 C C10 K55 . . . F 3 21.54 -40.206 13.218 1 39.52 ? C10 K55 923 B 1 HETATM 13 C C11 K55 . . . F 3 22.218 -39.025 13.527 1 39.98 ? C11 K55 923 B 1 HETATM 14 O O33 K55 . . . F 3 19.643 -41.26 12.134 1 37.73 ? O33 K55 923 B 1 HETATM 15 C C21 K55 . . . F 3 20.12 -42.538 12.507 1 38.31 ? C21 K55 923 B 1 HETATM 16 C C22 K55 . . . F 3 19.112 -43.487 11.94 1 37.39 ? C22 K55 923 B 1 HETATM 17 C C23 K55 . . . F 3 18.427 -44.257 12.999 1 36.49 ? C23 K55 923 B 1 HETATM 18 C C24 K55 . . . F 3 16.947 -44.096 12.789 1 37.39 ? C24 K55 923 B 1 HETATM 19 C C12 K55 . . . F 3 18.481 -38.944 11.263 1 36.15 ? C12 K55 923 B 1 HETATM 20 N N27 K55 . . . F 3 18.561 -39.244 9.838 1 35.16 ? N27 K55 923 B 1 HETATM 21 C C13 K55 . . . F 3 17.441 -39.25 9 1 30.98 ? C13 K55 923 B 1 HETATM 22 O O28 K55 . . . F 3 16.311 -39.01 9.359 1 29.82 ? O28 K55 923 B 1 HETATM 23 C C14 K55 . . . F 3 17.67 -39.555 7.596 1 29.94 ? C14 K55 923 B 1 HETATM 24 C C15 K55 . . . F 3 18.484 -40.617 7.185 1 29.4 ? C15 K55 923 B 1 HETATM 25 C C16 K55 . . . F 3 18.666 -40.861 5.802 1 29.07 ? C16 K55 923 B 1 HETATM 26 C C17 K55 . . . F 3 18.023 -40.036 4.829 1 29.54 ? C17 K55 923 B 1 HETATM 27 C C18 K55 . . . F 3 17.213 -38.98 5.268 1 28.89 ? C18 K55 923 B 1 HETATM 28 C C19 K55 . . . F 3 17.042 -38.745 6.635 1 30.3 ? C19 K55 923 B 1 HETATM 29 C C20 K55 . . . F 3 18.196 -40.27 3.351 1 29.78 ? C20 K55 923 B 1 HETATM 30 F F29 K55 . . . F 3 19.101 -41.418 8.063 1 25.47 ? F29 K55 923 B 1 HETATM 31 F F30 K55 . . . F 3 17.048 -40.585 2.766 1 31.58 ? F30 K55 923 B 1 HETATM 32 F F31 K55 . . . F 3 19.011 -41.299 3.057 1 31.72 ? F31 K55 923 B 1 HETATM 33 F F32 K55 . . . F 3 18.635 -39.224 2.659 1 29.78 ? F32 K55 923 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #