data_2ZNQ # _model_server_result.job_id kBAoy8P8Ci4tj3Y6iTaqZA _model_server_result.datetime_utc '2024-11-28 04:04:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2znq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":921}' # _entry.id 2ZNQ # _exptl.entry_id 2ZNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.01 _cell.angle_gamma 90 _cell.entry_id 2ZNQ _cell.length_a 39.172 _cell.length_b 91.947 _cell.length_c 96.361 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1 B,E,F,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 122 n n C5 C4 B7G sing 123 n n C5 C6 B7G sing 124 n n C5 H5 B7G sing 125 n n O5 C1 B7G sing 126 n n C1 C2 B7G sing 127 n n C1 O1 B7G sing 128 n n C1 H1 B7G sing 129 n n C2 C3 B7G sing 130 n n C2 O2 B7G sing 131 n n C2 H2 B7G sing 132 n n C3 C4 B7G sing 133 n n C3 O3 B7G sing 134 n n C3 H3 B7G sing 135 n n C4 O4 B7G sing 136 n n C4 H4 B7G sing 137 n n C6 O6 B7G sing 138 n n C6 H61 B7G sing 139 n n C6 H62 B7G sing 140 n n O1 C7 B7G sing 141 n n C7 C8 B7G sing 142 n n C7 H71 B7G sing 143 n n C7 H72 B7G sing 144 n n C8 C9 B7G sing 145 n n C8 H81 B7G sing 146 n n C8 H82 B7G sing 147 n n C9 C10 B7G sing 148 n n C9 H91 B7G sing 149 n n C9 H92 B7G sing 150 n n C10 C11 B7G sing 151 n n C10 H101 B7G sing 152 n n C10 H102 B7G sing 153 n n C11 C12 B7G sing 154 n n C11 H111 B7G sing 155 n n C11 H112 B7G sing 156 n n C12 C13 B7G sing 157 n n C12 H121 B7G sing 158 n n C12 H122 B7G sing 159 n n O2 HO2 B7G sing 160 n n O3 HO3 B7G sing 161 n n O4 HO4 B7G sing 162 n n O6 HO6 B7G sing 163 n n C13 H131 B7G sing 164 n n C13 H132 B7G sing 165 n n C13 H133 B7G sing 166 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2ZNQ _atom_sites.fract_transf_matrix[1][1] 0.025528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003591 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 921 921 B7G B7G . D 3 401 A 1 922 922 401 401 . E 2 B7G B 1 920 920 B7G B7G . F 3 401 B 1 923 923 401 401 . G 4 HOH A 1 1001 1001 HOH HOH . G 4 HOH A 2 1005 1005 HOH HOH . G 4 HOH A 3 1006 1006 HOH HOH . G 4 HOH A 4 1009 1009 HOH HOH . G 4 HOH A 5 1014 1014 HOH HOH . G 4 HOH A 6 1015 1015 HOH HOH . G 4 HOH A 7 1016 1016 HOH HOH . G 4 HOH A 8 1034 1034 HOH HOH . G 4 HOH A 9 1036 1036 HOH HOH . G 4 HOH A 10 1045 1045 HOH HOH . G 4 HOH A 11 1050 1050 HOH HOH . G 4 HOH A 12 1056 1056 HOH HOH . G 4 HOH A 13 1057 1057 HOH HOH . G 4 HOH A 14 1062 1062 HOH HOH . G 4 HOH A 15 1066 1066 HOH HOH . G 4 HOH A 16 1067 1067 HOH HOH . G 4 HOH A 17 1072 1072 HOH HOH . G 4 HOH A 18 1085 1085 HOH HOH . G 4 HOH A 19 1089 1089 HOH HOH . G 4 HOH A 20 1097 1097 HOH HOH . G 4 HOH A 21 1101 1101 HOH HOH . G 4 HOH A 22 1120 1120 HOH HOH . G 4 HOH A 23 1128 1128 HOH HOH . G 4 HOH A 24 1133 1133 HOH HOH . G 4 HOH A 25 1135 1135 HOH HOH . G 4 HOH A 26 1140 1140 HOH HOH . G 4 HOH A 27 1144 1144 HOH HOH . G 4 HOH A 28 1146 1146 HOH HOH . G 4 HOH A 29 1162 1162 HOH HOH . G 4 HOH A 30 1184 1184 HOH HOH . G 4 HOH A 31 1198 1198 HOH HOH . G 4 HOH A 32 1210 1210 HOH HOH . G 4 HOH A 33 1213 1213 HOH HOH . G 4 HOH A 34 1218 1218 HOH HOH . G 4 HOH A 35 1220 1220 HOH HOH . G 4 HOH A 36 1232 1232 HOH HOH . G 4 HOH A 37 1269 1269 HOH HOH . G 4 HOH A 38 1273 1273 HOH HOH . G 4 HOH A 39 1289 1289 HOH HOH . G 4 HOH A 40 1313 1313 HOH HOH . H 4 HOH B 1 1007 1007 HOH HOH . H 4 HOH B 2 1008 1008 HOH HOH . H 4 HOH B 3 1011 1011 HOH HOH . H 4 HOH B 4 1012 1012 HOH HOH . H 4 HOH B 5 1017 1017 HOH HOH . H 4 HOH B 6 1018 1018 HOH HOH . H 4 HOH B 7 1019 1019 HOH HOH . H 4 HOH B 8 1020 1020 HOH HOH . H 4 HOH B 9 1021 1021 HOH HOH . H 4 HOH B 10 1023 1023 HOH HOH . H 4 HOH B 11 1025 1025 HOH HOH . H 4 HOH B 12 1026 1026 HOH HOH . H 4 HOH B 13 1029 1029 HOH HOH . H 4 HOH B 14 1030 1030 HOH HOH . H 4 HOH B 15 1032 1032 HOH HOH . H 4 HOH B 16 1033 1033 HOH HOH . H 4 HOH B 17 1035 1035 HOH HOH . H 4 HOH B 18 1042 1042 HOH HOH . H 4 HOH B 19 1044 1044 HOH HOH . H 4 HOH B 20 1058 1058 HOH HOH . H 4 HOH B 21 1064 1064 HOH HOH . H 4 HOH B 22 1070 1070 HOH HOH . H 4 HOH B 23 1071 1071 HOH HOH . H 4 HOH B 24 1080 1080 HOH HOH . H 4 HOH B 25 1081 1081 HOH HOH . H 4 HOH B 26 1119 1119 HOH HOH . H 4 HOH B 27 1121 1121 HOH HOH . H 4 HOH B 28 1123 1123 HOH HOH . H 4 HOH B 29 1126 1126 HOH HOH . H 4 HOH B 30 1134 1134 HOH HOH . H 4 HOH B 31 1136 1136 HOH HOH . H 4 HOH B 32 1141 1141 HOH HOH . H 4 HOH B 33 1143 1143 HOH HOH . H 4 HOH B 34 1158 1158 HOH HOH . H 4 HOH B 35 1169 1169 HOH HOH . H 4 HOH B 36 1189 1189 HOH HOH . H 4 HOH B 37 1192 1192 HOH HOH . H 4 HOH B 38 1197 1197 HOH HOH . H 4 HOH B 39 1240 1240 HOH HOH . H 4 HOH B 40 1251 1251 HOH HOH . H 4 HOH B 41 1285 1285 HOH HOH . H 4 HOH B 42 1295 1295 HOH HOH . H 4 HOH B 43 1302 1302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . C 2 22.414 -17.845 26.867 1 37.15 ? C5 B7G 921 A 1 HETATM 2 O O5 B7G . . . C 2 21.742 -16.84 27.676 1 36.71 ? O5 B7G 921 A 1 HETATM 3 C C1 B7G . . . C 2 22.41 -15.555 27.538 1 37.53 ? C1 B7G 921 A 1 HETATM 4 C C2 B7G . . . C 2 23.851 -15.646 28.023 1 38.14 ? C2 B7G 921 A 1 HETATM 5 C C3 B7G . . . C 2 24.576 -16.669 27.164 1 37.98 ? C3 B7G 921 A 1 HETATM 6 C C4 B7G . . . C 2 23.868 -18.003 27.327 1 37.27 ? C4 B7G 921 A 1 HETATM 7 C C6 B7G . . . C 2 21.703 -19.197 27.016 1 34.92 ? C6 B7G 921 A 1 HETATM 8 O O1 B7G . . . C 2 21.745 -14.576 28.328 1 36.36 ? O1 B7G 921 A 1 HETATM 9 C C7 B7G . . . C 2 20.435 -14.513 27.822 1 35.68 ? C7 B7G 921 A 1 HETATM 10 C C8 B7G . . . C 2 19.606 -13.479 28.565 1 34.21 ? C8 B7G 921 A 1 HETATM 11 C C9 B7G . . . C 2 18.258 -13.549 27.903 1 33.96 ? C9 B7G 921 A 1 HETATM 12 C C10 B7G . . . C 2 17.265 -12.59 28.486 1 32.97 ? C10 B7G 921 A 1 HETATM 13 C C11 B7G . . . C 2 16.013 -12.865 27.688 1 37.01 ? C11 B7G 921 A 1 HETATM 14 C C12 B7G . . . C 2 14.873 -11.993 28.144 1 40.73 ? C12 B7G 921 A 1 HETATM 15 O O2 B7G . . . C 2 24.475 -14.364 27.878 1 39.53 ? O2 B7G 921 A 1 HETATM 16 O O3 B7G . . . C 2 25.937 -16.787 27.599 1 37.58 ? O3 B7G 921 A 1 HETATM 17 O O4 B7G . . . C 2 24.514 -18.978 26.521 1 39.37 ? O4 B7G 921 A 1 HETATM 18 O O6 B7G . . . C 2 20.345 -19.095 26.594 1 33.8 ? O6 B7G 921 A 1 HETATM 19 C C13 B7G . . . C 2 13.648 -12.344 27.299 1 42.44 ? C13 B7G 921 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #