data_2ZOX # _model_server_result.job_id HnM2q33jQFyzSXe_M5ivfw _model_server_result.datetime_utc '2024-10-25 20:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":471}' # _entry.id 2ZOX # _exptl.entry_id 2ZOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.249 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl alpha-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZOX _cell.length_a 66.12 _cell.length_b 82.529 _cell.length_c 91.673 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE1 GLU 373 A GLU 373 1_555 B C1 GLC . A GLC 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O ARG 285 A ARG 285 1_555 E MG MG . A MG 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C12 H15 N O8' _chem_comp.formula_weight 301.249 _chem_comp.id PNG _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl alpha-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms "4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE;4-nitrophenyl alpha-D-glucoside;4-nitrophenyl D-glucoside;4-nitrophenyl glucoside" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PNG sing 399 n n C1 O1 PNG sing 400 n n C1 O5 PNG sing 401 n n C1 H1 PNG sing 402 n n C2 C3 PNG sing 403 n n C2 O2 PNG sing 404 n n C2 H2 PNG sing 405 n n C3 C4 PNG sing 406 n n C3 O3 PNG sing 407 n n C3 H3 PNG sing 408 n n C4 C5 PNG sing 409 n n C4 O4 PNG sing 410 n n C4 H4 PNG sing 411 n n C5 C6 PNG sing 412 n n C5 O5 PNG sing 413 n n C5 H5 PNG sing 414 n n C6 O6 PNG sing 415 n n C6 H61 PNG sing 416 n n C6 H62 PNG sing 417 n n C7 C8 PNG doub 418 n y C7 C12 PNG sing 419 n y C7 O1 PNG sing 420 n n C8 C9 PNG sing 421 n y C8 H8 PNG sing 422 n n C9 C10 PNG doub 423 n y C9 H9 PNG sing 424 n n C10 C11 PNG sing 425 n y C10 N1 PNG sing 426 n n C11 C12 PNG doub 427 n y C11 H11 PNG sing 428 n n C12 H12 PNG sing 429 n n N1 O7 PNG doub 430 n n N1 O8 PNG sing 431 n n O2 HO2 PNG sing 432 n n O3 HO3 PNG sing 433 n n O4 HO4 PNG sing 434 n n O6 HO6 PNG sing 435 n n # _pdbx_chem_comp_identifier.comp_id PNG _pdbx_chem_comp_identifier.identifier "4'-nitrophenyl-a-D-glucopyranoside" _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2ZOX _atom_sites.fract_transf_matrix[1][1] 0.015124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 470 1 GLC GLC . C 3 PNG A 1 471 1 PNG PBG . D 4 MG A 1 472 1 MG MG . E 4 MG A 1 473 1 MG MG . F 5 PO4 A 1 474 1 PO4 PO4 . G 6 PLM A 1 475 1 PLM PLM . H 7 OLA A 1 476 1 OLA OLA . I 6 PLM A 1 477 1 PLM PLM . J 8 GOL A 1 478 1 GOL GOL . K 9 HOH A 1 479 2 HOH HOH . K 9 HOH A 2 480 4 HOH HOH . K 9 HOH A 3 481 6 HOH HOH . K 9 HOH A 4 482 7 HOH HOH . K 9 HOH A 5 483 8 HOH HOH . K 9 HOH A 6 484 9 HOH HOH . K 9 HOH A 7 485 10 HOH HOH . K 9 HOH A 8 486 12 HOH HOH . K 9 HOH A 9 487 13 HOH HOH . K 9 HOH A 10 488 14 HOH HOH . K 9 HOH A 11 489 15 HOH HOH . K 9 HOH A 12 490 16 HOH HOH . K 9 HOH A 13 491 17 HOH HOH . K 9 HOH A 14 492 18 HOH HOH . K 9 HOH A 15 493 19 HOH HOH . K 9 HOH A 16 494 20 HOH HOH . K 9 HOH A 17 495 21 HOH HOH . K 9 HOH A 18 496 22 HOH HOH . K 9 HOH A 19 497 23 HOH HOH . K 9 HOH A 20 498 24 HOH HOH . K 9 HOH A 21 499 26 HOH HOH . K 9 HOH A 22 500 27 HOH HOH . K 9 HOH A 23 501 28 HOH HOH . K 9 HOH A 24 502 29 HOH HOH . K 9 HOH A 25 503 30 HOH HOH . K 9 HOH A 26 504 31 HOH HOH . K 9 HOH A 27 505 32 HOH HOH . K 9 HOH A 28 506 33 HOH HOH . K 9 HOH A 29 507 34 HOH HOH . K 9 HOH A 30 508 35 HOH HOH . K 9 HOH A 31 509 36 HOH HOH . K 9 HOH A 32 510 37 HOH HOH . K 9 HOH A 33 511 38 HOH HOH . K 9 HOH A 34 512 39 HOH HOH . K 9 HOH A 35 513 40 HOH HOH . K 9 HOH A 36 514 41 HOH HOH . K 9 HOH A 37 515 42 HOH HOH . K 9 HOH A 38 516 43 HOH HOH . K 9 HOH A 39 517 44 HOH HOH . K 9 HOH A 40 518 45 HOH HOH . K 9 HOH A 41 519 46 HOH HOH . K 9 HOH A 42 520 47 HOH HOH . K 9 HOH A 43 521 48 HOH HOH . K 9 HOH A 44 522 49 HOH HOH . K 9 HOH A 45 523 50 HOH HOH . K 9 HOH A 46 524 51 HOH HOH . K 9 HOH A 47 525 52 HOH HOH . K 9 HOH A 48 526 53 HOH HOH . K 9 HOH A 49 527 55 HOH HOH . K 9 HOH A 50 528 56 HOH HOH . K 9 HOH A 51 529 57 HOH HOH . K 9 HOH A 52 530 58 HOH HOH . K 9 HOH A 53 531 59 HOH HOH . K 9 HOH A 54 532 60 HOH HOH . K 9 HOH A 55 533 61 HOH HOH . K 9 HOH A 56 534 62 HOH HOH . K 9 HOH A 57 535 63 HOH HOH . K 9 HOH A 58 536 64 HOH HOH . K 9 HOH A 59 537 65 HOH HOH . K 9 HOH A 60 538 66 HOH HOH . K 9 HOH A 61 539 67 HOH HOH . K 9 HOH A 62 540 68 HOH HOH . K 9 HOH A 63 541 70 HOH HOH . K 9 HOH A 64 542 71 HOH HOH . K 9 HOH A 65 543 72 HOH HOH . K 9 HOH A 66 544 73 HOH HOH . K 9 HOH A 67 545 74 HOH HOH . K 9 HOH A 68 546 75 HOH HOH . K 9 HOH A 69 547 76 HOH HOH . K 9 HOH A 70 548 77 HOH HOH . K 9 HOH A 71 549 78 HOH HOH . K 9 HOH A 72 550 79 HOH HOH . K 9 HOH A 73 551 80 HOH HOH . K 9 HOH A 74 552 81 HOH HOH . K 9 HOH A 75 553 82 HOH HOH . K 9 HOH A 76 554 83 HOH HOH . K 9 HOH A 77 555 84 HOH HOH . K 9 HOH A 78 556 85 HOH HOH . K 9 HOH A 79 557 86 HOH HOH . K 9 HOH A 80 558 87 HOH HOH . K 9 HOH A 81 559 88 HOH HOH . K 9 HOH A 82 560 89 HOH HOH . K 9 HOH A 83 561 90 HOH HOH . K 9 HOH A 84 562 91 HOH HOH . K 9 HOH A 85 563 92 HOH HOH . K 9 HOH A 86 564 93 HOH HOH . K 9 HOH A 87 565 94 HOH HOH . K 9 HOH A 88 566 95 HOH HOH . K 9 HOH A 89 567 96 HOH HOH . K 9 HOH A 90 568 97 HOH HOH . K 9 HOH A 91 569 98 HOH HOH . K 9 HOH A 92 570 99 HOH HOH . K 9 HOH A 93 571 100 HOH HOH . K 9 HOH A 94 572 101 HOH HOH . K 9 HOH A 95 573 102 HOH HOH . K 9 HOH A 96 574 103 HOH HOH . K 9 HOH A 97 575 104 HOH HOH . K 9 HOH A 98 576 106 HOH HOH . K 9 HOH A 99 577 107 HOH HOH . K 9 HOH A 100 578 108 HOH HOH . K 9 HOH A 101 579 109 HOH HOH . K 9 HOH A 102 580 110 HOH HOH . K 9 HOH A 103 581 111 HOH HOH . K 9 HOH A 104 582 112 HOH HOH . K 9 HOH A 105 583 114 HOH HOH . K 9 HOH A 106 584 115 HOH HOH . K 9 HOH A 107 585 116 HOH HOH . K 9 HOH A 108 586 117 HOH HOH . K 9 HOH A 109 587 118 HOH HOH . K 9 HOH A 110 588 119 HOH HOH . K 9 HOH A 111 589 120 HOH HOH . K 9 HOH A 112 590 121 HOH HOH . K 9 HOH A 113 591 122 HOH HOH . K 9 HOH A 114 592 123 HOH HOH . K 9 HOH A 115 593 125 HOH HOH . K 9 HOH A 116 594 126 HOH HOH . K 9 HOH A 117 595 127 HOH HOH . K 9 HOH A 118 596 128 HOH HOH . K 9 HOH A 119 597 129 HOH HOH . K 9 HOH A 120 598 130 HOH HOH . K 9 HOH A 121 599 131 HOH HOH . K 9 HOH A 122 600 132 HOH HOH . K 9 HOH A 123 601 134 HOH HOH . K 9 HOH A 124 602 135 HOH HOH . K 9 HOH A 125 603 136 HOH HOH . K 9 HOH A 126 604 137 HOH HOH . K 9 HOH A 127 605 138 HOH HOH . K 9 HOH A 128 606 139 HOH HOH . K 9 HOH A 129 607 140 HOH HOH . K 9 HOH A 130 608 141 HOH HOH . K 9 HOH A 131 609 142 HOH HOH . K 9 HOH A 132 610 143 HOH HOH . K 9 HOH A 133 611 144 HOH HOH . K 9 HOH A 134 612 145 HOH HOH . K 9 HOH A 135 613 146 HOH HOH . K 9 HOH A 136 614 148 HOH HOH . K 9 HOH A 137 615 149 HOH HOH . K 9 HOH A 138 616 150 HOH HOH . K 9 HOH A 139 617 151 HOH HOH . K 9 HOH A 140 618 152 HOH HOH . K 9 HOH A 141 619 153 HOH HOH . K 9 HOH A 142 620 154 HOH HOH . K 9 HOH A 143 621 155 HOH HOH . K 9 HOH A 144 622 156 HOH HOH . K 9 HOH A 145 623 157 HOH HOH . K 9 HOH A 146 624 158 HOH HOH . K 9 HOH A 147 625 159 HOH HOH . K 9 HOH A 148 626 160 HOH HOH . K 9 HOH A 149 627 161 HOH HOH . K 9 HOH A 150 628 162 HOH HOH . K 9 HOH A 151 629 163 HOH HOH . K 9 HOH A 152 630 164 HOH HOH . K 9 HOH A 153 631 166 HOH HOH . K 9 HOH A 154 632 167 HOH HOH . K 9 HOH A 155 633 168 HOH HOH . K 9 HOH A 156 634 169 HOH HOH . K 9 HOH A 157 635 170 HOH HOH . K 9 HOH A 158 636 171 HOH HOH . K 9 HOH A 159 637 172 HOH HOH . K 9 HOH A 160 638 173 HOH HOH . K 9 HOH A 161 639 174 HOH HOH . K 9 HOH A 162 640 176 HOH HOH . K 9 HOH A 163 641 178 HOH HOH . K 9 HOH A 164 642 179 HOH HOH . K 9 HOH A 165 643 180 HOH HOH . K 9 HOH A 166 644 181 HOH HOH . K 9 HOH A 167 645 182 HOH HOH . K 9 HOH A 168 646 183 HOH HOH . K 9 HOH A 169 647 184 HOH HOH . K 9 HOH A 170 648 185 HOH HOH . K 9 HOH A 171 649 186 HOH HOH . K 9 HOH A 172 650 187 HOH HOH . K 9 HOH A 173 651 188 HOH HOH . K 9 HOH A 174 652 189 HOH HOH . K 9 HOH A 175 653 190 HOH HOH . K 9 HOH A 176 654 192 HOH HOH . K 9 HOH A 177 655 194 HOH HOH . K 9 HOH A 178 656 195 HOH HOH . K 9 HOH A 179 657 196 HOH HOH . K 9 HOH A 180 658 198 HOH HOH . K 9 HOH A 181 659 199 HOH HOH . K 9 HOH A 182 660 200 HOH HOH . K 9 HOH A 183 661 201 HOH HOH . K 9 HOH A 184 662 202 HOH HOH . K 9 HOH A 185 663 203 HOH HOH . K 9 HOH A 186 664 204 HOH HOH . K 9 HOH A 187 665 205 HOH HOH . K 9 HOH A 188 666 206 HOH HOH . K 9 HOH A 189 667 207 HOH HOH . K 9 HOH A 190 668 208 HOH HOH . K 9 HOH A 191 669 209 HOH HOH . K 9 HOH A 192 670 210 HOH HOH . K 9 HOH A 193 671 211 HOH HOH . K 9 HOH A 194 672 212 HOH HOH . K 9 HOH A 195 673 213 HOH HOH . K 9 HOH A 196 674 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PNG . . . C 3 -29.008 23.465 -17.56 1 57.09 ? C1 PNG 471 A 1 HETATM 2 C C2 PNG . . . C 3 -30.354 24.189 -17.458 1 56.85 ? C2 PNG 471 A 1 HETATM 3 C C3 PNG . . . C 3 -31.43 23.268 -16.882 1 57.04 ? C3 PNG 471 A 1 HETATM 4 C C4 PNG . . . C 3 -31.456 21.914 -17.591 1 57.28 ? C4 PNG 471 A 1 HETATM 5 C C5 PNG . . . C 3 -30.049 21.315 -17.626 1 57.04 ? C5 PNG 471 A 1 HETATM 6 C C6 PNG . . . C 3 -30.009 19.983 -18.359 1 56.61 ? C6 PNG 471 A 1 HETATM 7 C C7 PNG . . . C 3 -26.706 24.069 -18.152 1 56.94 ? C7 PNG 471 A 1 HETATM 8 C C8 PNG . . . C 3 -25.838 25.118 -18.449 1 56.85 ? C8 PNG 471 A 1 HETATM 9 C C9 PNG . . . C 3 -24.46 24.929 -18.352 1 56.88 ? C9 PNG 471 A 1 HETATM 10 C C10 PNG . . . C 3 -23.946 23.689 -17.962 1 56.92 ? C10 PNG 471 A 1 HETATM 11 C C11 PNG . . . C 3 -24.815 22.641 -17.671 1 56.65 ? C11 PNG 471 A 1 HETATM 12 C C12 PNG . . . C 3 -26.189 22.83 -17.76 1 56.57 ? C12 PNG 471 A 1 HETATM 13 N N1 PNG . . . C 3 -22.559 23.496 -17.869 1 57.21 ? N1 PNG 471 A 1 HETATM 14 O O1 PNG . . . C 3 -28.06 24.275 -18.254 1 56.99 ? O1 PNG 471 A 1 HETATM 15 O O2 PNG . . . C 3 -30.231 25.345 -16.624 1 56.43 ? O2 PNG 471 A 1 HETATM 16 O O3 PNG . . . C 3 -32.707 23.895 -17.013 1 57.02 ? O3 PNG 471 A 1 HETATM 17 O O4 PNG . . . C 3 -32.365 21.031 -16.92 1 58.08 ? O4 PNG 471 A 1 HETATM 18 O O5 PNG . . . C 3 -29.16 22.232 -18.272 1 56.94 ? O5 PNG 471 A 1 HETATM 19 O O6 PNG . . . C 3 -29.92 20.234 -19.762 1 56.18 ? O6 PNG 471 A 1 HETATM 20 O O7 PNG . . . C 3 -21.796 24.233 -18.477 1 57.43 ? O7 PNG 471 A 1 HETATM 21 O O8 PNG . . . C 3 -22.035 22.469 -17.086 1 57.07 ? O8 PNG 471 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #