data_2ZP3 # _model_server_result.job_id XRs26QVmHFOEYHnewd_ayg _model_server_result.datetime_utc '2024-12-22 03:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 2ZP3 # _exptl.entry_id 2ZP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZP3 _cell.length_a 45.786 _cell.length_b 45.786 _cell.length_c 101.943 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O CYS 123 A CYS 123 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc2 A OXT CYS 123 A CYS 123 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 B CA CA . A CA 124 1_555 F O HOH . A HOH 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 B CA CA . A CA 124 1_555 F O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 B CA CA . A CA 124 1_555 F O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 B CA CA . A CA 124 1_555 F O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 355 n n C C2 TRS sing 356 n n C C3 TRS sing 357 n n C N TRS sing 358 n n C1 O1 TRS sing 359 n n C1 H11 TRS sing 360 n n C1 H12 TRS sing 361 n n C2 O2 TRS sing 362 n n C2 H21 TRS sing 363 n n C2 H22 TRS sing 364 n n C3 O3 TRS sing 365 n n C3 H31 TRS sing 366 n n C3 H32 TRS sing 367 n n N HN1 TRS sing 368 n n N HN2 TRS sing 369 n n N HN3 TRS sing 370 n n O1 HO1 TRS sing 371 n n O2 HO2 TRS sing 372 n n O3 HO3 TRS sing 373 n n # _atom_sites.entry_id 2ZP3 _atom_sites.fract_transf_matrix[1][1] 0.021841 _atom_sites.fract_transf_matrix[1][2] 0.01261 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 124 124 CA CA2 . C 3 CL A 1 125 125 CL CL1 . D 4 TRS A 1 601 601 TRS TRS . E 5 MRD A 1 602 602 MRD MPD . F 6 HOH A 1 201 201 HOH HOH . F 6 HOH A 2 202 202 HOH HOH . F 6 HOH A 3 203 203 HOH HOH . F 6 HOH A 4 204 204 HOH HOH . F 6 HOH A 5 205 205 HOH HOH . F 6 HOH A 6 206 206 HOH HOH . F 6 HOH A 7 207 207 HOH HOH . F 6 HOH A 8 208 208 HOH HOH . F 6 HOH A 9 209 209 HOH HOH . F 6 HOH A 10 210 210 HOH HOH . F 6 HOH A 11 211 211 HOH HOH . F 6 HOH A 12 212 212 HOH HOH . F 6 HOH A 13 213 213 HOH HOH . F 6 HOH A 14 214 214 HOH HOH . F 6 HOH A 15 215 215 HOH HOH . F 6 HOH A 16 216 216 HOH HOH . F 6 HOH A 17 217 217 HOH HOH . F 6 HOH A 18 218 218 HOH HOH . F 6 HOH A 19 219 219 HOH HOH . F 6 HOH A 20 220 220 HOH HOH . F 6 HOH A 21 221 221 HOH HOH . F 6 HOH A 22 222 222 HOH HOH . F 6 HOH A 23 223 223 HOH HOH . F 6 HOH A 24 224 224 HOH HOH . F 6 HOH A 25 225 225 HOH HOH . F 6 HOH A 26 226 226 HOH HOH . F 6 HOH A 27 227 227 HOH HOH . F 6 HOH A 28 228 228 HOH HOH . F 6 HOH A 29 229 229 HOH HOH . F 6 HOH A 30 230 230 HOH HOH . F 6 HOH A 31 231 231 HOH HOH . F 6 HOH A 32 232 232 HOH HOH . F 6 HOH A 33 233 233 HOH HOH . F 6 HOH A 34 234 234 HOH HOH . F 6 HOH A 35 235 235 HOH HOH . F 6 HOH A 36 236 236 HOH HOH . F 6 HOH A 37 237 237 HOH HOH . F 6 HOH A 38 238 238 HOH HOH . F 6 HOH A 39 239 239 HOH HOH . F 6 HOH A 40 240 240 HOH HOH . F 6 HOH A 41 241 241 HOH HOH . F 6 HOH A 42 242 242 HOH HOH . F 6 HOH A 43 243 243 HOH HOH . F 6 HOH A 44 244 244 HOH HOH . F 6 HOH A 45 245 245 HOH HOH . F 6 HOH A 46 246 246 HOH HOH . F 6 HOH A 47 247 247 HOH HOH . F 6 HOH A 48 248 248 HOH HOH . F 6 HOH A 49 249 249 HOH HOH . F 6 HOH A 50 250 250 HOH HOH . F 6 HOH A 51 251 251 HOH HOH . F 6 HOH A 52 252 252 HOH HOH . F 6 HOH A 53 253 253 HOH HOH . F 6 HOH A 54 254 254 HOH HOH . F 6 HOH A 55 255 255 HOH HOH . F 6 HOH A 56 256 256 HOH HOH . F 6 HOH A 57 257 257 HOH HOH . F 6 HOH A 58 258 258 HOH HOH . F 6 HOH A 59 259 259 HOH HOH . F 6 HOH A 60 260 260 HOH HOH . F 6 HOH A 61 261 261 HOH HOH . F 6 HOH A 62 262 262 HOH HOH . F 6 HOH A 63 263 263 HOH HOH . F 6 HOH A 64 264 264 HOH HOH . F 6 HOH A 65 265 265 HOH HOH . F 6 HOH A 66 266 266 HOH HOH . F 6 HOH A 67 267 267 HOH HOH . F 6 HOH A 68 268 268 HOH HOH . F 6 HOH A 69 269 269 HOH HOH . F 6 HOH A 70 270 270 HOH HOH . F 6 HOH A 71 271 271 HOH HOH . F 6 HOH A 72 272 272 HOH HOH . F 6 HOH A 73 273 273 HOH HOH . F 6 HOH A 74 274 274 HOH HOH . F 6 HOH A 75 275 275 HOH HOH . F 6 HOH A 76 276 276 HOH HOH . F 6 HOH A 77 277 277 HOH HOH . F 6 HOH A 78 278 278 HOH HOH . F 6 HOH A 79 279 279 HOH HOH . F 6 HOH A 80 280 280 HOH HOH . F 6 HOH A 81 281 281 HOH HOH . F 6 HOH A 82 282 282 HOH HOH . F 6 HOH A 83 283 283 HOH HOH . F 6 HOH A 84 284 284 HOH HOH . F 6 HOH A 85 285 285 HOH HOH . F 6 HOH A 86 286 286 HOH HOH . F 6 HOH A 87 287 287 HOH HOH . F 6 HOH A 88 288 288 HOH HOH . F 6 HOH A 89 289 289 HOH HOH . F 6 HOH A 90 290 290 HOH HOH . F 6 HOH A 91 291 291 HOH HOH . F 6 HOH A 92 292 292 HOH HOH . F 6 HOH A 93 293 293 HOH HOH . F 6 HOH A 94 294 294 HOH HOH . F 6 HOH A 95 295 295 HOH HOH . F 6 HOH A 96 296 296 HOH HOH . F 6 HOH A 97 297 297 HOH HOH . F 6 HOH A 98 298 298 HOH HOH . F 6 HOH A 99 299 299 HOH HOH . F 6 HOH A 100 300 300 HOH HOH . F 6 HOH A 101 301 301 HOH HOH . F 6 HOH A 102 302 302 HOH HOH . F 6 HOH A 103 303 303 HOH HOH . F 6 HOH A 104 304 304 HOH HOH . F 6 HOH A 105 305 305 HOH HOH . F 6 HOH A 106 306 306 HOH HOH . F 6 HOH A 107 307 307 HOH HOH . F 6 HOH A 108 308 308 HOH HOH . F 6 HOH A 109 309 309 HOH HOH . F 6 HOH A 110 310 310 HOH HOH . F 6 HOH A 111 311 311 HOH HOH . F 6 HOH A 112 312 312 HOH HOH . F 6 HOH A 113 313 313 HOH HOH . F 6 HOH A 114 314 314 HOH HOH . F 6 HOH A 115 315 315 HOH HOH . F 6 HOH A 116 316 316 HOH HOH . F 6 HOH A 117 317 317 HOH HOH . F 6 HOH A 118 318 318 HOH HOH . F 6 HOH A 119 319 319 HOH HOH . F 6 HOH A 120 320 320 HOH HOH . F 6 HOH A 121 321 321 HOH HOH . F 6 HOH A 122 322 322 HOH HOH . F 6 HOH A 123 323 323 HOH HOH . F 6 HOH A 124 324 324 HOH HOH . F 6 HOH A 125 325 325 HOH HOH . F 6 HOH A 126 326 326 HOH HOH . F 6 HOH A 127 327 327 HOH HOH . F 6 HOH A 128 328 328 HOH HOH . F 6 HOH A 129 329 329 HOH HOH . F 6 HOH A 130 330 330 HOH HOH . F 6 HOH A 131 331 331 HOH HOH . F 6 HOH A 132 332 332 HOH HOH . F 6 HOH A 133 333 333 HOH HOH . F 6 HOH A 134 334 334 HOH HOH . F 6 HOH A 135 335 335 HOH HOH . F 6 HOH A 136 336 336 HOH HOH . F 6 HOH A 137 337 337 HOH HOH . F 6 HOH A 138 338 338 HOH HOH . F 6 HOH A 139 339 339 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 20.004 -22.221 -4.895 1 78.36 ? C TRS 601 A 1 HETATM 2 C C1 TRS . . . D 4 19.699 -20.669 -5.058 1 78.26 ? C1 TRS 601 A 1 HETATM 3 C C2 TRS . . . D 4 18.969 -23.259 -4.839 1 78.25 ? C2 TRS 601 A 1 HETATM 4 C C3 TRS . . . D 4 21.301 -22.911 -4.772 1 78.44 ? C3 TRS 601 A 1 HETATM 5 N N TRS . . . D 4 19.958 -22.038 -3.415 1 78.43 ? N TRS 601 A 1 HETATM 6 O O1 TRS . . . D 4 18.35 -19.941 -5.188 1 77.77 ? O1 TRS 601 A 1 HETATM 7 O O2 TRS . . . D 4 17.683 -22.963 -4.923 1 78.06 ? O2 TRS 601 A 1 HETATM 8 O O3 TRS . . . D 4 21.947 -23.907 -5.694 1 78.45 ? O3 TRS 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 8 #