data_2ZP8 # _model_server_result.job_id Jp6AvULJRxNMrGj4XDsgzQ _model_server_result.datetime_utc '2025-03-30 14:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":100}' # _entry.id 2ZP8 # _exptl.entry_id 2ZP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZP8 _cell.length_a 201.134 _cell.length_b 201.134 _cell.length_c 133.168 _cell.Z_PDB 108 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E SG CYS 12 E CYS 12 1_555 O ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? metalc ? metalc2 E SG CYS 26 E CYS 26 1_555 O ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc3 F SG CYS 12 F CYS 12 1_555 P ZN ZN . F ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc4 F SG CYS 15 F CYS 15 1_555 P ZN ZN . F ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 F SG CYS 26 F CYS 26 1_555 P ZN ZN . F ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 F SG CYS 29 F CYS 29 1_555 P ZN ZN . F ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 G SG CYS 12 G CYS 12 1_555 Q ZN ZN . G ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 G SG CYS 15 G CYS 15 1_555 Q ZN ZN . G ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc9 G SG CYS 26 G CYS 26 1_555 Q ZN ZN . G ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc10 G SG CYS 29 G CYS 29 1_555 Q ZN ZN . G ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 H SG CYS 12 H CYS 12 1_555 R ZN ZN . H ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? metalc ? metalc12 H SG CYS 26 H CYS 26 1_555 R ZN ZN . H ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc13 I SG CYS 12 I CYS 12 1_555 S ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc14 I SG CYS 15 I CYS 15 1_555 S ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? metalc ? metalc15 I SG CYS 26 I CYS 26 1_555 S ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc16 I SG CYS 29 I CYS 29 1_555 S ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc17 J SG CYS 12 J CYS 12 1_555 T ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc18 J SG CYS 15 J CYS 15 1_555 T ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc19 J SG CYS 26 J CYS 26 1_555 T ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc20 J SG CYS 29 J CYS 29 1_555 T ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 304 n n N H TRP sing 305 n n N H2 TRP sing 306 n n CA C TRP sing 307 n n CA CB TRP sing 308 n n CA HA TRP sing 309 n n C O TRP doub 310 n n C OXT TRP sing 311 n n CB CG TRP sing 312 n n CB HB2 TRP sing 313 n n CB HB3 TRP sing 314 n n CG CD1 TRP doub 315 n y CG CD2 TRP sing 316 n y CD1 NE1 TRP sing 317 n y CD1 HD1 TRP sing 318 n n CD2 CE2 TRP doub 319 n y CD2 CE3 TRP sing 320 n y NE1 CE2 TRP sing 321 n y NE1 HE1 TRP sing 322 n n CE2 CZ2 TRP sing 323 n y CE3 CZ3 TRP doub 324 n y CE3 HE3 TRP sing 325 n n CZ2 CH2 TRP doub 326 n y CZ2 HZ2 TRP sing 327 n n CZ3 CH2 TRP sing 328 n y CZ3 HZ3 TRP sing 329 n n CH2 HH2 TRP sing 330 n n OXT HXT TRP sing 331 n n # _atom_sites.entry_id 2ZP8 _atom_sites.fract_transf_matrix[1][1] 0.004972 _atom_sites.fract_transf_matrix[1][2] 0.00287 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 TRP A 1 100 100 TRP TRP . L 3 TRP B 1 100 100 TRP TRP . M 3 TRP C 1 100 100 TRP TRP . N 3 TRP D 1 100 100 TRP TRP . O 4 ZN E 1 54 54 ZN ZN . P 4 ZN F 1 54 54 ZN ZN . Q 4 ZN G 1 54 54 ZN ZN . R 4 ZN H 1 54 54 ZN ZN . S 4 ZN I 1 54 54 ZN ZN . T 4 ZN J 1 54 54 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . L 3 -19.673 -20.985 38.644 1 57.29 ? N TRP 100 B 1 HETATM 2 C CA TRP . . . L 3 -19.861 -20.041 39.784 1 57.45 ? CA TRP 100 B 1 HETATM 3 C C TRP . . . L 3 -19.127 -18.731 39.525 1 57.8 ? C TRP 100 B 1 HETATM 4 O O TRP . . . L 3 -17.991 -18.736 39.03 1 58.03 ? O TRP 100 B 1 HETATM 5 C CB TRP . . . L 3 -19.375 -20.657 41.102 1 57.01 ? CB TRP 100 B 1 HETATM 6 C CG TRP . . . L 3 -19.428 -19.7 42.257 1 56.73 ? CG TRP 100 B 1 HETATM 7 C CD1 TRP . . . L 3 -18.413 -18.909 42.703 1 56.71 ? CD1 TRP 100 B 1 HETATM 8 C CD2 TRP . . . L 3 -20.557 -19.418 43.103 1 56.32 ? CD2 TRP 100 B 1 HETATM 9 N NE1 TRP . . . L 3 -18.832 -18.155 43.774 1 56.85 ? NE1 TRP 100 B 1 HETATM 10 C CE2 TRP . . . L 3 -20.145 -18.448 44.039 1 56.42 ? CE2 TRP 100 B 1 HETATM 11 C CE3 TRP . . . L 3 -21.871 -19.896 43.166 1 56.75 ? CE3 TRP 100 B 1 HETATM 12 C CZ2 TRP . . . L 3 -20.998 -17.948 45.028 1 56.11 ? CZ2 TRP 100 B 1 HETATM 13 C CZ3 TRP . . . L 3 -22.726 -19.392 44.153 1 56.58 ? CZ3 TRP 100 B 1 HETATM 14 C CH2 TRP . . . L 3 -22.281 -18.433 45.067 1 56.41 ? CH2 TRP 100 B 1 HETATM 15 O OXT TRP . . . L 3 -19.661 -17.655 39.821 1 57.92 ? OXT TRP 100 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #