data_2ZP9 # _model_server_result.job_id EPZNOz0xXN3YQ78OL-_oYw _model_server_result.datetime_utc '2024-12-26 15:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":100}' # _entry.id 2ZP9 # _exptl.entry_id 2ZP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZP9 _cell.length_a 197.134 _cell.length_b 197.135 _cell.length_c 56.658 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 30-meric 30 author_and_software_defined_assembly 1 PISA 30-meric 30 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression F,G,H,I,J,K,L,M,N,O,U,V,W,X,Y,Z 1 1,2,3 A,B,C,D,E,P,Q,R,S,T 2 1,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.500003 -0.866021 0 0.86603 -0.499997 0 0 0 1 -98.5675 170.723918 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.499997 0.866021 0 -0.86603 -0.500003 0 0 0 1 -197.134 0 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.500003 -0.866021 0 0.86603 -0.499997 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.499997 0.866021 0 -0.86603 -0.500003 0 0 0 1 0 0 0 6 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 7 'crystal symmetry operation' 5_555 y,-x+y,z 0.500003 0.866021 0 -0.86603 0.499997 0 0 0 1 0 0 0 8 'crystal symmetry operation' 6_555 x-y,x,z 0.499997 -0.866021 0 0.86603 0.500003 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 P N N ? 3 Q N N ? 3 U N N ? 3 V N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 15 C CYS 15 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc2 C SG CYS 26 C CYS 26 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 C SG CYS 29 C CYS 29 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 D SG CYS 12 D CYS 12 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 D SG CYS 15 D CYS 15 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 D SG CYS 26 D CYS 26 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 D SG CYS 29 D CYS 29 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc8 E SG CYS 12 E CYS 12 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 E SG CYS 15 E CYS 15 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc10 E SG CYS 26 E CYS 26 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 E SG CYS 29 E CYS 29 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 I SG CYS 12 I CYS 12 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc13 I SG CYS 15 I CYS 15 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.549 ? metalc ? metalc14 I SG CYS 29 I CYS 29 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc15 J SG CYS 12 J CYS 12 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc16 J SG CYS 15 J CYS 15 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc17 J SG CYS 26 J CYS 26 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc18 J SG CYS 29 J CYS 29 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 304 n n N H TRP sing 305 n n N H2 TRP sing 306 n n CA C TRP sing 307 n n CA CB TRP sing 308 n n CA HA TRP sing 309 n n C O TRP doub 310 n n C OXT TRP sing 311 n n CB CG TRP sing 312 n n CB HB2 TRP sing 313 n n CB HB3 TRP sing 314 n n CG CD1 TRP doub 315 n y CG CD2 TRP sing 316 n y CD1 NE1 TRP sing 317 n y CD1 HD1 TRP sing 318 n n CD2 CE2 TRP doub 319 n y CD2 CE3 TRP sing 320 n y NE1 CE2 TRP sing 321 n y NE1 HE1 TRP sing 322 n n CE2 CZ2 TRP sing 323 n y CE3 CZ3 TRP doub 324 n y CE3 HE3 TRP sing 325 n n CZ2 CH2 TRP doub 326 n y CZ2 HZ2 TRP sing 327 n n CZ3 CH2 TRP sing 328 n y CZ3 HZ3 TRP sing 329 n n CH2 HH2 TRP sing 330 n n OXT HXT TRP sing 331 n n # _atom_sites.entry_id 2ZP9 _atom_sites.fract_transf_matrix[1][1] 0.005073 _atom_sites.fract_transf_matrix[1][2] 0.002929 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 3 TRP A 1 100 100 TRP TRP . Q 3 TRP B 1 100 100 TRP TRP . R 4 ZN C 1 54 54 ZN ZN . S 4 ZN D 1 54 54 ZN ZN . T 4 ZN E 1 54 54 ZN ZN . U 3 TRP F 1 100 100 TRP TRP . V 3 TRP G 1 100 100 TRP TRP . W 4 ZN I 1 54 54 ZN ZN . X 4 ZN J 1 54 54 ZN ZN . Y 3 TRP K 1 100 100 TRP TRP . Z 3 TRP L 1 100 100 TRP TRP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . Y 3 -72.361 61.853 12.793 1 122.82 ? N TRP 100 K 1 HETATM 2 C CA TRP . . . Y 3 -71.602 62.292 11.634 1 122.88 ? CA TRP 100 K 1 HETATM 3 C C TRP . . . Y 3 -70.313 62.98 12.088 1 122.93 ? C TRP 100 K 1 HETATM 4 O O TRP . . . Y 3 -69.734 62.632 13.117 1 122.99 ? O TRP 100 K 1 HETATM 5 C CB TRP . . . Y 3 -72.458 63.245 10.808 1 122.87 ? CB TRP 100 K 1 HETATM 6 C CG TRP . . . Y 3 -72.208 63.216 9.334 1 122.8 ? CG TRP 100 K 1 HETATM 7 C CD1 TRP . . . Y 3 -72.699 62.311 8.445 1 122.71 ? CD1 TRP 100 K 1 HETATM 8 C CD2 TRP . . . Y 3 -71.442 64.159 8.568 1 122.72 ? CD2 TRP 100 K 1 HETATM 9 N NE1 TRP . . . Y 3 -72.278 62.62 7.176 1 122.96 ? NE1 TRP 100 K 1 HETATM 10 C CE2 TRP . . . Y 3 -71.504 63.749 7.223 1 122.72 ? CE2 TRP 100 K 1 HETATM 11 C CE3 TRP . . . Y 3 -70.707 65.309 8.89 1 122.72 ? CE3 TRP 100 K 1 HETATM 12 C CZ2 TRP . . . Y 3 -70.855 64.444 6.198 1 122.71 ? CZ2 TRP 100 K 1 HETATM 13 C CZ3 TRP . . . Y 3 -70.061 65.995 7.874 1 122.61 ? CZ3 TRP 100 K 1 HETATM 14 C CH2 TRP . . . Y 3 -70.142 65.562 6.544 1 122.7 ? CH2 TRP 100 K 1 HETATM 15 O OXT TRP . . . Y 3 -69.794 63.895 11.456 1 122.93 ? OXT TRP 100 K 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #