data_2ZP9 # _model_server_result.job_id iYdzgAM5J0WGL-8RwTZHcQ _model_server_result.datetime_utc '2024-12-26 15:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":54}' # _entry.id 2ZP9 # _exptl.entry_id 2ZP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZP9 _cell.length_a 197.134 _cell.length_b 197.135 _cell.length_c 56.658 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 30-meric 30 author_and_software_defined_assembly 1 PISA 30-meric 30 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression F,G,H,I,J,K,L,M,N,O,U,V,W,X,Y,Z 1 1,2,3 A,B,C,D,E,P,Q,R,S,T 2 1,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.500003 -0.866021 0 0.86603 -0.499997 0 0 0 1 -98.5675 170.723918 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.499997 0.866021 0 -0.86603 -0.500003 0 0 0 1 -197.134 0 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.500003 -0.866021 0 0.86603 -0.499997 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.499997 0.866021 0 -0.86603 -0.500003 0 0 0 1 0 0 0 6 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 7 'crystal symmetry operation' 5_555 y,-x+y,z 0.500003 0.866021 0 -0.86603 0.499997 0 0 0 1 0 0 0 8 'crystal symmetry operation' 6_555 x-y,x,z 0.499997 -0.866021 0 0.86603 0.500003 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 R N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 15 C CYS 15 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc2 C SG CYS 26 C CYS 26 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 C SG CYS 29 C CYS 29 1_555 R ZN ZN . C ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 D SG CYS 12 D CYS 12 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 D SG CYS 15 D CYS 15 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 D SG CYS 26 D CYS 26 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 D SG CYS 29 D CYS 29 1_555 S ZN ZN . D ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc8 E SG CYS 12 E CYS 12 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 E SG CYS 15 E CYS 15 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc10 E SG CYS 26 E CYS 26 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 E SG CYS 29 E CYS 29 1_555 T ZN ZN . E ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 I SG CYS 12 I CYS 12 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc13 I SG CYS 15 I CYS 15 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.549 ? metalc ? metalc14 I SG CYS 29 I CYS 29 1_555 W ZN ZN . I ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc15 J SG CYS 12 J CYS 12 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc16 J SG CYS 15 J CYS 15 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc17 J SG CYS 26 J CYS 26 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc18 J SG CYS 29 J CYS 29 1_555 X ZN ZN . J ZN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZP9 _atom_sites.fract_transf_matrix[1][1] 0.005073 _atom_sites.fract_transf_matrix[1][2] 0.002929 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 3 TRP A 1 100 100 TRP TRP . Q 3 TRP B 1 100 100 TRP TRP . R 4 ZN C 1 54 54 ZN ZN . S 4 ZN D 1 54 54 ZN ZN . T 4 ZN E 1 54 54 ZN ZN . U 3 TRP F 1 100 100 TRP TRP . V 3 TRP G 1 100 100 TRP TRP . W 4 ZN I 1 54 54 ZN ZN . X 4 ZN J 1 54 54 ZN ZN . Y 3 TRP K 1 100 100 TRP TRP . Z 3 TRP L 1 100 100 TRP TRP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 4 _atom_site.Cartn_x -61.094 _atom_site.Cartn_y -3.356 _atom_site.Cartn_z 14.733 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 140.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 54 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #