data_2ZPL # _model_server_result.job_id K6X7HOAnVfOqXTBnVpbnng _model_server_result.datetime_utc '2024-10-19 20:13:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 2ZPL # _exptl.entry_id 2ZPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZPL _cell.length_a 54.756 _cell.length_b 54.756 _cell.length_c 75.644 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,I 1 1 B,E,F,J 2 1 C,G,H,K 3 1 A,B,C,D,E,F,G,H,I,J,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 44 A GLN 168 1_555 A N MSE 45 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 45 A MSE 169 1_555 A N VAL 46 A VAL 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLN 44 B GLN 168 1_555 B N MSE 45 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 B C MSE 45 B MSE 169 1_555 B N VAL 46 B VAL 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 C C GLN 44 C GLN 168 1_555 C N MSE 45 C MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 C C MSE 45 C MSE 169 1_555 C N VAL 46 C VAL 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 D NI NI . A NI 1 1_555 A OD1 ASP 51 A ASP 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 D NI NI . A NI 1 1_555 I O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 D NI NI . A NI 1 1_555 I O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 D NI NI . A NI 1 1_555 I O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A NE2 HIS 75 A HIS 199 1_555 E NI NI . B NI 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 E NI NI . B NI 2 1_555 J O HOH . B HOH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc7 E NI NI . B NI 2 1_555 J O HOH . B HOH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 E NI NI . B NI 2 1_555 J O HOH . B HOH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc9 E NI NI . B NI 2 1_555 B N GLY 1 B GLY 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc10 E NI NI . B NI 2 1_555 B O GLY 1 B GLY 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc11 G NI NI . C NI 3 1_555 C NE2 HIS 75 C HIS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZPL _atom_sites.fract_transf_matrix[1][1] 0.018263 _atom_sites.fract_transf_matrix[1][2] 0.010544 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NI A 1 1 1 NI NI . E 2 NI B 1 2 2 NI NI . F 3 GOL B 1 222 2 GOL GOL . G 2 NI C 1 3 3 NI NI . H 3 GOL C 1 1 1 GOL GOL . I 4 HOH A 1 222 1 HOH HOH . I 4 HOH A 2 223 2 HOH HOH . I 4 HOH A 3 224 3 HOH HOH . I 4 HOH A 4 225 13 HOH HOH . I 4 HOH A 5 226 17 HOH HOH . I 4 HOH A 6 227 20 HOH HOH . I 4 HOH A 7 228 22 HOH HOH . I 4 HOH A 8 229 23 HOH HOH . I 4 HOH A 9 230 26 HOH HOH . I 4 HOH A 10 231 30 HOH HOH . I 4 HOH A 11 232 32 HOH HOH . I 4 HOH A 12 233 33 HOH HOH . I 4 HOH A 13 234 38 HOH HOH . I 4 HOH A 14 235 40 HOH HOH . I 4 HOH A 15 236 42 HOH HOH . I 4 HOH A 16 237 49 HOH HOH . I 4 HOH A 17 238 51 HOH HOH . I 4 HOH A 18 239 52 HOH HOH . I 4 HOH A 19 240 53 HOH HOH . I 4 HOH A 20 241 56 HOH HOH . I 4 HOH A 21 242 58 HOH HOH . I 4 HOH A 22 243 67 HOH HOH . I 4 HOH A 23 244 69 HOH HOH . I 4 HOH A 24 245 72 HOH HOH . I 4 HOH A 25 246 73 HOH HOH . I 4 HOH A 26 247 74 HOH HOH . I 4 HOH A 27 248 76 HOH HOH . I 4 HOH A 28 249 81 HOH HOH . I 4 HOH A 29 250 87 HOH HOH . I 4 HOH A 30 251 92 HOH HOH . I 4 HOH A 31 252 94 HOH HOH . I 4 HOH A 32 253 95 HOH HOH . I 4 HOH A 33 254 97 HOH HOH . I 4 HOH A 34 255 98 HOH HOH . I 4 HOH A 35 256 99 HOH HOH . I 4 HOH A 36 257 100 HOH HOH . I 4 HOH A 37 258 102 HOH HOH . I 4 HOH A 38 259 104 HOH HOH . I 4 HOH A 39 260 105 HOH HOH . I 4 HOH A 40 261 106 HOH HOH . I 4 HOH A 41 262 107 HOH HOH . I 4 HOH A 42 263 111 HOH HOH . I 4 HOH A 43 264 114 HOH HOH . I 4 HOH A 44 265 115 HOH HOH . I 4 HOH A 45 266 119 HOH HOH . I 4 HOH A 46 267 120 HOH HOH . J 4 HOH B 1 4 4 HOH HOH . J 4 HOH B 2 5 5 HOH HOH . J 4 HOH B 3 6 6 HOH HOH . J 4 HOH B 4 7 7 HOH HOH . J 4 HOH B 5 12 12 HOH HOH . J 4 HOH B 6 21 21 HOH HOH . J 4 HOH B 7 25 25 HOH HOH . J 4 HOH B 8 27 27 HOH HOH . J 4 HOH B 9 28 28 HOH HOH . J 4 HOH B 10 29 29 HOH HOH . J 4 HOH B 11 34 34 HOH HOH . J 4 HOH B 12 36 36 HOH HOH . J 4 HOH B 13 37 37 HOH HOH . J 4 HOH B 14 39 39 HOH HOH . J 4 HOH B 15 44 44 HOH HOH . J 4 HOH B 16 45 45 HOH HOH . J 4 HOH B 17 46 46 HOH HOH . J 4 HOH B 18 47 47 HOH HOH . J 4 HOH B 19 48 48 HOH HOH . J 4 HOH B 20 50 50 HOH HOH . J 4 HOH B 21 57 57 HOH HOH . J 4 HOH B 22 59 59 HOH HOH . J 4 HOH B 23 60 60 HOH HOH . J 4 HOH B 24 61 61 HOH HOH . J 4 HOH B 25 62 62 HOH HOH . J 4 HOH B 26 63 63 HOH HOH . J 4 HOH B 27 64 64 HOH HOH . J 4 HOH B 28 65 65 HOH HOH . J 4 HOH B 29 66 66 HOH HOH . J 4 HOH B 30 68 68 HOH HOH . J 4 HOH B 31 70 70 HOH HOH . J 4 HOH B 32 71 71 HOH HOH . J 4 HOH B 33 75 75 HOH HOH . J 4 HOH B 34 77 77 HOH HOH . J 4 HOH B 35 79 79 HOH HOH . J 4 HOH B 36 80 80 HOH HOH . J 4 HOH B 37 82 82 HOH HOH . J 4 HOH B 38 83 83 HOH HOH . J 4 HOH B 39 84 84 HOH HOH . J 4 HOH B 40 88 88 HOH HOH . J 4 HOH B 41 90 90 HOH HOH . J 4 HOH B 42 91 91 HOH HOH . J 4 HOH B 43 93 93 HOH HOH . J 4 HOH B 44 101 101 HOH HOH . J 4 HOH B 45 103 103 HOH HOH . J 4 HOH B 46 109 109 HOH HOH . J 4 HOH B 47 110 110 HOH HOH . J 4 HOH B 48 112 112 HOH HOH . J 4 HOH B 49 113 113 HOH HOH . J 4 HOH B 50 117 117 HOH HOH . J 4 HOH B 51 121 121 HOH HOH . K 4 HOH C 1 8 8 HOH HOH . K 4 HOH C 2 9 9 HOH HOH . K 4 HOH C 3 10 10 HOH HOH . K 4 HOH C 4 11 11 HOH HOH . K 4 HOH C 5 14 14 HOH HOH . K 4 HOH C 6 15 15 HOH HOH . K 4 HOH C 7 16 16 HOH HOH . K 4 HOH C 8 18 18 HOH HOH . K 4 HOH C 9 19 19 HOH HOH . K 4 HOH C 10 24 24 HOH HOH . K 4 HOH C 11 31 31 HOH HOH . K 4 HOH C 12 35 35 HOH HOH . K 4 HOH C 13 41 41 HOH HOH . K 4 HOH C 14 43 43 HOH HOH . K 4 HOH C 15 54 54 HOH HOH . K 4 HOH C 16 55 55 HOH HOH . K 4 HOH C 17 78 78 HOH HOH . K 4 HOH C 18 85 85 HOH HOH . K 4 HOH C 19 86 86 HOH HOH . K 4 HOH C 20 89 89 HOH HOH . K 4 HOH C 21 96 96 HOH HOH . K 4 HOH C 22 108 108 HOH HOH . K 4 HOH C 23 116 116 HOH HOH . K 4 HOH C 24 118 118 HOH HOH . K 4 HOH C 25 122 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.908 _atom_site.Cartn_y 14.018 _atom_site.Cartn_z 51.562 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #