data_2ZQJ # _model_server_result.job_id 3Op7QGUH-7r5mHkZeoRdgA _model_server_result.datetime_utc '2024-11-15 04:47:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2ZQJ # _exptl.entry_id 2ZQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZQJ _cell.length_a 173.076 _cell.length_b 173.076 _cell.length_c 279.616 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 363 A CYS 363 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 B SG CYS 363 B CYS 363 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 C SG CYS 363 C CYS 363 1_555 F FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2ZQJ _atom_sites.fract_transf_matrix[1][1] 0.005778 _atom_sites.fract_transf_matrix[1][2] 0.003336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 501 501 HEM HEM . E 2 HEM B 1 501 501 HEM HEM . F 2 HEM C 1 501 501 HEM HEM . G 3 HOH A 1 502 2 HOH HOH . G 3 HOH A 2 503 6 HOH HOH . G 3 HOH A 3 504 8 HOH HOH . G 3 HOH A 4 505 11 HOH HOH . G 3 HOH A 5 506 12 HOH HOH . G 3 HOH A 6 507 13 HOH HOH . G 3 HOH A 7 508 14 HOH HOH . G 3 HOH A 8 509 15 HOH HOH . G 3 HOH A 9 510 19 HOH HOH . G 3 HOH A 10 511 21 HOH HOH . G 3 HOH A 11 512 23 HOH HOH . G 3 HOH A 12 513 24 HOH HOH . G 3 HOH A 13 514 25 HOH HOH . G 3 HOH A 14 515 27 HOH HOH . G 3 HOH A 15 516 28 HOH HOH . G 3 HOH A 16 517 29 HOH HOH . G 3 HOH A 17 518 30 HOH HOH . G 3 HOH A 18 519 32 HOH HOH . G 3 HOH A 19 520 33 HOH HOH . G 3 HOH A 20 521 38 HOH HOH . G 3 HOH A 21 522 41 HOH HOH . G 3 HOH A 22 523 45 HOH HOH . G 3 HOH A 23 524 48 HOH HOH . G 3 HOH A 24 525 49 HOH HOH . G 3 HOH A 25 526 51 HOH HOH . G 3 HOH A 26 527 52 HOH HOH . G 3 HOH A 27 528 53 HOH HOH . G 3 HOH A 28 529 57 HOH HOH . H 3 HOH B 1 502 1 HOH HOH . H 3 HOH B 2 503 3 HOH HOH . H 3 HOH B 3 504 4 HOH HOH . H 3 HOH B 4 505 5 HOH HOH . H 3 HOH B 5 506 9 HOH HOH . H 3 HOH B 6 507 16 HOH HOH . H 3 HOH B 7 508 17 HOH HOH . H 3 HOH B 8 509 20 HOH HOH . H 3 HOH B 9 510 26 HOH HOH . H 3 HOH B 10 511 31 HOH HOH . H 3 HOH B 11 512 34 HOH HOH . H 3 HOH B 12 513 37 HOH HOH . H 3 HOH B 13 514 40 HOH HOH . H 3 HOH B 14 515 42 HOH HOH . H 3 HOH B 15 516 43 HOH HOH . H 3 HOH B 16 517 44 HOH HOH . H 3 HOH B 17 518 50 HOH HOH . I 3 HOH C 1 502 7 HOH HOH . I 3 HOH C 2 503 10 HOH HOH . I 3 HOH C 3 504 18 HOH HOH . I 3 HOH C 4 505 22 HOH HOH . I 3 HOH C 5 506 35 HOH HOH . I 3 HOH C 6 507 36 HOH HOH . I 3 HOH C 7 508 39 HOH HOH . I 3 HOH C 8 509 46 HOH HOH . I 3 HOH C 9 510 47 HOH HOH . I 3 HOH C 10 511 54 HOH HOH . I 3 HOH C 11 512 55 HOH HOH . I 3 HOH C 12 513 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 72.463 -75.489 -27.654 1 24.51 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 70.03 -75.949 -23.557 1 24.15 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 73.949 -77.954 -21.25 1 24.54 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 76.567 -76.716 -25.009 1 23.87 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 71.315 -75.668 -26.84 1 23.7 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 69.936 -75.265 -27.093 1 24.36 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 69.265 -75.403 -25.932 1 24.5 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 70.239 -75.85 -24.968 1 25.1 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 67.761 -75.235 -25.675 1 23.85 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 69.356 -74.664 -28.379 1 24.26 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 68.794 -75.63 -29.395 1 24.6 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 68.775 -75.059 -30.788 1 27.42 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 68.289 -75.756 -31.7 1 29.19 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 69.249 -73.922 -30.987 1 27.63 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 70.942 -76.35 -22.581 1 24.11 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 70.531 -76.598 -21.216 1 24.42 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 71.609 -77.192 -20.573 1 23.63 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 72.685 -77.347 -21.569 1 25.79 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 69.121 -76.269 -20.661 1 20.8 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 71.552 -77.626 -19.261 1 22.38 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 72.307 -77.258 -18.215 1 21.67 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 75.109 -78.04 -22 1 25.29 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 76.405 -78.581 -21.739 1 26.16 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 77.156 -78.256 -22.897 1 25.75 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 76.333 -77.475 -23.784 1 25.48 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 76.777 -79.391 -20.513 1 24.98 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 78.362 -78.736 -23.293 1 24.69 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 79.403 -78.659 -22.464 1 24.75 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 75.693 -76.074 -25.972 1 24.44 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 76.107 -75.551 -27.293 1 24.55 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 74.971 -75.266 -28.056 1 25.35 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 73.839 -75.623 -27.223 1 25.78 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 77.495 -75.44 -27.913 1 22.54 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 74.829 -74.738 -29.5 1 24.57 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 74.634 -75.739 -30.647 1 25.74 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 74.085 -75.101 -31.921 1 27.45 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 74.25 -75.695 -33.013 1 25.34 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 73.471 -74.009 -31.837 1 28.78 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 71.452 -76.042 -25.549 1 24.15 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 72.252 -76.773 -22.821 1 25.98 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 75.121 -77.499 -23.215 1 24.04 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 74.277 -76.092 -25.955 1 25.89 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 73.014 -76.707 -24.634 1 27.4 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #