data_2ZRI # _model_server_result.job_id y606sjAAeoDpUDGDEaCkgw _model_server_result.datetime_utc '2024-11-14 19:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2ZRI # _exptl.entry_id 2ZRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZRI _cell.length_a 102.089 _cell.length_b 102.089 _cell.length_c 74.41 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2ZRI _atom_sites.fract_transf_matrix[1][1] 0.009795 _atom_sites.fract_transf_matrix[1][2] 0.005655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 500 500 ADP ADP . C 3 GOL A 1 501 501 GOL GOL . D 3 GOL A 1 502 502 GOL GOL . E 4 HOH A 1 503 1 HOH HOH . E 4 HOH A 2 504 2 HOH HOH . E 4 HOH A 3 505 5 HOH HOH . E 4 HOH A 4 506 10 HOH HOH . E 4 HOH A 5 507 11 HOH HOH . E 4 HOH A 6 508 13 HOH HOH . E 4 HOH A 7 509 17 HOH HOH . E 4 HOH A 8 510 19 HOH HOH . E 4 HOH A 9 511 20 HOH HOH . E 4 HOH A 10 512 22 HOH HOH . E 4 HOH A 11 513 23 HOH HOH . E 4 HOH A 12 514 29 HOH HOH . E 4 HOH A 13 515 35 HOH HOH . E 4 HOH A 14 516 40 HOH HOH . E 4 HOH A 15 517 44 HOH HOH . E 4 HOH A 16 518 48 HOH HOH . E 4 HOH A 17 519 49 HOH HOH . E 4 HOH A 18 520 50 HOH HOH . E 4 HOH A 19 521 52 HOH HOH . E 4 HOH A 20 522 53 HOH HOH . E 4 HOH A 21 523 54 HOH HOH . E 4 HOH A 22 524 55 HOH HOH . E 4 HOH A 23 525 57 HOH HOH . E 4 HOH A 24 526 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 5.283 25.113 -9.944 1 98.44 ? PB ADP 500 A 1 HETATM 2 O O1B ADP . . . B 2 5.637 23.544 -9.956 1 98.44 ? O1B ADP 500 A 1 HETATM 3 O O2B ADP . . . B 2 3.885 25.38 -9.535 1 98.44 ? O2B ADP 500 A 1 HETATM 4 O O3B ADP . . . B 2 6.342 25.777 -8.93 1 98.44 ? O3B ADP 500 A 1 HETATM 5 P PA ADP . . . B 2 6.69 26.877 -11.575 1 98.44 ? PA ADP 500 A 1 HETATM 6 O O1A ADP . . . B 2 8.057 26.311 -11.535 1 98.44 ? O1A ADP 500 A 1 HETATM 7 O O2A ADP . . . B 2 6.331 27.93 -10.599 1 98.44 ? O2A ADP 500 A 1 HETATM 8 O O3A ADP . . . B 2 5.636 25.676 -11.41 1 98.44 ? O3A ADP 500 A 1 HETATM 9 O O5' ADP . . . B 2 6.399 27.422 -13.067 1 98.44 ? O5' ADP 500 A 1 HETATM 10 C C5' ADP . . . B 2 5.232 28.188 -13.362 1 98.44 ? C5' ADP 500 A 1 HETATM 11 C C4' ADP . . . B 2 5.293 28.66 -14.816 1 98.44 ? C4' ADP 500 A 1 HETATM 12 O O4' ADP . . . B 2 6.425 29.499 -15.053 1 98.44 ? O4' ADP 500 A 1 HETATM 13 C C3' ADP . . . B 2 5.482 27.441 -15.725 1 98.44 ? C3' ADP 500 A 1 HETATM 14 O O3' ADP . . . B 2 4.195 26.895 -16.032 1 98.44 ? O3' ADP 500 A 1 HETATM 15 C C2' ADP . . . B 2 6.044 28.149 -16.961 1 98.44 ? C2' ADP 500 A 1 HETATM 16 O O2' ADP . . . B 2 4.995 28.871 -17.625 1 98.44 ? O2' ADP 500 A 1 HETATM 17 C C1' ADP . . . B 2 7.017 29.142 -16.315 1 98.44 ? C1' ADP 500 A 1 HETATM 18 N N9 ADP . . . B 2 8.335 28.538 -16.009 1 98.44 ? N9 ADP 500 A 1 HETATM 19 C C8 ADP . . . B 2 8.734 28.11 -14.819 1 98.44 ? C8 ADP 500 A 1 HETATM 20 N N7 ADP . . . B 2 10.012 27.724 -14.885 1 98.44 ? N7 ADP 500 A 1 HETATM 21 C C5 ADP . . . B 2 10.42 27.906 -16.134 1 98.44 ? C5 ADP 500 A 1 HETATM 22 C C6 ADP . . . B 2 11.627 27.702 -16.796 1 98.44 ? C6 ADP 500 A 1 HETATM 23 N N6 ADP . . . B 2 12.687 27.243 -16.137 1 98.44 ? N6 ADP 500 A 1 HETATM 24 N N1 ADP . . . B 2 11.71 27.998 -18.099 1 98.44 ? N1 ADP 500 A 1 HETATM 25 C C2 ADP . . . B 2 10.669 28.482 -18.757 1 98.44 ? C2 ADP 500 A 1 HETATM 26 N N3 ADP . . . B 2 9.509 28.693 -18.162 1 98.44 ? N3 ADP 500 A 1 HETATM 27 C C4 ADP . . . B 2 9.351 28.418 -16.852 1 98.44 ? C4 ADP 500 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #