data_2ZRL # _model_server_result.job_id VpSHL54d-XJDC4RuE0QsUA _model_server_result.datetime_utc '2025-08-31 23:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2ZRL # _exptl.entry_id 2ZRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZRL _cell.length_a 103.37 _cell.length_b 103.37 _cell.length_c 75.39 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 70 n n PG O2G DTP sing 71 n n PG O3G DTP sing 72 n n PG O3B DTP sing 73 n n O2G HOG2 DTP sing 74 n n O3G HOG3 DTP sing 75 n n PB O1B DTP doub 76 n n PB O2B DTP sing 77 n n PB O3B DTP sing 78 n n PB O3A DTP sing 79 n n O2B HOB2 DTP sing 80 n n PA O1A DTP doub 81 n n PA O2A DTP sing 82 n n PA O3A DTP sing 83 n n PA O5' DTP sing 84 n n O2A HOA2 DTP sing 85 n n O5' C5' DTP sing 86 n n C5' C4' DTP sing 87 n n C5' "H5'1" DTP sing 88 n n C5' "H5'2" DTP sing 89 n n C4' O4' DTP sing 90 n n C4' C3' DTP sing 91 n n C4' H4' DTP sing 92 n n O4' C1' DTP sing 93 n n C3' O3' DTP sing 94 n n C3' C2' DTP sing 95 n n C3' H3' DTP sing 96 n n O3' HO3' DTP sing 97 n n C2' C1' DTP sing 98 n n C2' "H2'1" DTP sing 99 n n C2' "H2'2" DTP sing 100 n n C1' N9 DTP sing 101 n n C1' H1' DTP sing 102 n n N9 C8 DTP sing 103 n y N9 C4 DTP sing 104 n y C8 N7 DTP doub 105 n y C8 H8 DTP sing 106 n n N7 C5 DTP sing 107 n y C5 C6 DTP sing 108 n y C5 C4 DTP doub 109 n y C6 N6 DTP sing 110 n n C6 N1 DTP doub 111 n y N6 HN61 DTP sing 112 n n N6 HN62 DTP sing 113 n n N1 C2 DTP sing 114 n y C2 N3 DTP doub 115 n y C2 H2 DTP sing 116 n n N3 C4 DTP sing 117 n y # _atom_sites.entry_id 2ZRL _atom_sites.fract_transf_matrix[1][1] 0.009674 _atom_sites.fract_transf_matrix[1][2] 0.005585 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DTP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 600 _pdbx_nonpoly_scheme.auth_seq_num 600 _pdbx_nonpoly_scheme.pdb_mon_id DTP _pdbx_nonpoly_scheme.auth_mon_id DTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . B 2 23.394 5.396 -7.504 0.8 105.25 ? PG DTP 600 A 1 HETATM 2 O O1G DTP . . . B 2 23.189 4.253 -8.389 0.8 105.25 ? O1G DTP 600 A 1 HETATM 3 O O2G DTP . . . B 2 22.379 5.387 -6.449 0.8 105.25 ? O2G DTP 600 A 1 HETATM 4 O O3G DTP . . . B 2 24.721 5.312 -6.9 0.8 105.25 ? O3G DTP 600 A 1 HETATM 5 P PB DTP . . . B 2 24.353 7.979 -8.112 0.8 105.25 ? PB DTP 600 A 1 HETATM 6 O O1B DTP . . . B 2 25.313 7.965 -6.968 0.8 105.25 ? O1B DTP 600 A 1 HETATM 7 O O2B DTP . . . B 2 23.37 9.237 -7.844 0.8 105.25 ? O2B DTP 600 A 1 HETATM 8 O O3B DTP . . . B 2 23.276 6.767 -8.358 0.8 105.25 ? O3B DTP 600 A 1 HETATM 9 P PA DTP . . . B 2 26.666 8.359 -9.693 0.8 105.25 ? PA DTP 600 A 1 HETATM 10 O O1A DTP . . . B 2 27.513 7.393 -10.427 0.8 105.25 ? O1A DTP 600 A 1 HETATM 11 O O2A DTP . . . B 2 27.137 9.136 -8.357 0.8 105.25 ? O2A DTP 600 A 1 HETATM 12 O O3A DTP . . . B 2 25.07 8.177 -9.531 0.8 105.25 ? O3A DTP 600 A 1 HETATM 13 O O5' DTP . . . B 2 26.551 9.647 -10.651 0.8 105.25 ? O5' DTP 600 A 1 HETATM 14 C C5' DTP . . . B 2 26.006 9.521 -11.959 0.8 105.25 ? C5' DTP 600 A 1 HETATM 15 C C4' DTP . . . B 2 27.064 9.658 -13.053 0.8 105.25 ? C4' DTP 600 A 1 HETATM 16 O O4' DTP . . . B 2 28.093 8.646 -12.911 0.8 105.25 ? O4' DTP 600 A 1 HETATM 17 C C3' DTP . . . B 2 26.403 9.385 -14.406 0.8 105.25 ? C3' DTP 600 A 1 HETATM 18 O O3' DTP . . . B 2 25.909 10.642 -14.861 0.8 105.25 ? O3' DTP 600 A 1 HETATM 19 C C2' DTP . . . B 2 27.67 9.061 -15.211 0.8 105.25 ? C2' DTP 600 A 1 HETATM 20 C C1' DTP . . . B 2 28.453 8.175 -14.227 0.8 105.25 ? C1' DTP 600 A 1 HETATM 21 N N9 DTP . . . B 2 28.048 6.787 -14.37 0.8 105.25 ? N9 DTP 600 A 1 HETATM 22 C C8 DTP . . . B 2 27.252 6.182 -13.324 0.8 105.25 ? C8 DTP 600 A 1 HETATM 23 N N7 DTP . . . B 2 27.02 4.938 -13.686 0.8 105.25 ? N7 DTP 600 A 1 HETATM 24 C C5 DTP . . . B 2 27.699 4.682 -15.058 0.8 105.25 ? C5 DTP 600 A 1 HETATM 25 C C6 DTP . . . B 2 27.77 3.447 -15.955 0.8 105.25 ? C6 DTP 600 A 1 HETATM 26 N N6 DTP . . . B 2 27.11 2.205 -15.551 0.8 105.25 ? N6 DTP 600 A 1 HETATM 27 N N1 DTP . . . B 2 28.403 3.502 -17.052 0.8 105.25 ? N1 DTP 600 A 1 HETATM 28 C C2 DTP . . . B 2 29.084 4.777 -17.474 0.8 105.25 ? C2 DTP 600 A 1 HETATM 29 N N3 DTP . . . B 2 29.027 5.847 -16.705 0.8 105.25 ? N3 DTP 600 A 1 HETATM 30 C C4 DTP . . . B 2 28.299 5.797 -15.434 0.8 105.25 ? C4 DTP 600 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #