data_2ZRP # _model_server_result.job_id 1LbX6nuEg-78JS4CjUaHHA _model_server_result.datetime_utc '2024-11-29 16:11:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zrp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2ZRP # _exptl.entry_id 2ZRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZRP _cell.length_a 103.75 _cell.length_b 103.75 _cell.length_c 74.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 70 n n PG O2G DTP sing 71 n n PG O3G DTP sing 72 n n PG O3B DTP sing 73 n n O2G HOG2 DTP sing 74 n n O3G HOG3 DTP sing 75 n n PB O1B DTP doub 76 n n PB O2B DTP sing 77 n n PB O3B DTP sing 78 n n PB O3A DTP sing 79 n n O2B HOB2 DTP sing 80 n n PA O1A DTP doub 81 n n PA O2A DTP sing 82 n n PA O3A DTP sing 83 n n PA O5' DTP sing 84 n n O2A HOA2 DTP sing 85 n n O5' C5' DTP sing 86 n n C5' C4' DTP sing 87 n n C5' "H5'1" DTP sing 88 n n C5' "H5'2" DTP sing 89 n n C4' O4' DTP sing 90 n n C4' C3' DTP sing 91 n n C4' H4' DTP sing 92 n n O4' C1' DTP sing 93 n n C3' O3' DTP sing 94 n n C3' C2' DTP sing 95 n n C3' H3' DTP sing 96 n n O3' HO3' DTP sing 97 n n C2' C1' DTP sing 98 n n C2' "H2'1" DTP sing 99 n n C2' "H2'2" DTP sing 100 n n C1' N9 DTP sing 101 n n C1' H1' DTP sing 102 n n N9 C8 DTP sing 103 n y N9 C4 DTP sing 104 n y C8 N7 DTP doub 105 n y C8 H8 DTP sing 106 n n N7 C5 DTP sing 107 n y C5 C6 DTP sing 108 n y C5 C4 DTP doub 109 n y C6 N6 DTP sing 110 n n C6 N1 DTP doub 111 n y N6 HN61 DTP sing 112 n n N6 HN62 DTP sing 113 n n N1 C2 DTP sing 114 n y C2 N3 DTP doub 115 n y C2 H2 DTP sing 116 n n N3 C4 DTP sing 117 n y # _atom_sites.entry_id 2ZRP _atom_sites.fract_transf_matrix[1][1] 0.009639 _atom_sites.fract_transf_matrix[1][2] 0.005565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTP A 1 600 600 DTP DTP . C 3 HOH A 1 601 6 HOH HOH . C 3 HOH A 2 602 8 HOH HOH . C 3 HOH A 3 603 24 HOH HOH . C 3 HOH A 4 604 25 HOH HOH . C 3 HOH A 5 605 26 HOH HOH . C 3 HOH A 6 606 27 HOH HOH . C 3 HOH A 7 607 28 HOH HOH . C 3 HOH A 8 608 29 HOH HOH . C 3 HOH A 9 609 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . B 2 -23.834 6.399 6.557 1 101.35 ? PG DTP 600 A 1 HETATM 2 O O1G DTP . . . B 2 -23.443 5.205 7.34 1 101.35 ? O1G DTP 600 A 1 HETATM 3 O O2G DTP . . . B 2 -22.597 6.866 5.638 1 101.35 ? O2G DTP 600 A 1 HETATM 4 O O3G DTP . . . B 2 -25.093 6.038 5.62 1 101.35 ? O3G DTP 600 A 1 HETATM 5 P PB DTP . . . B 2 -24.952 8.938 7.055 1 101.35 ? PB DTP 600 A 1 HETATM 6 O O1B DTP . . . B 2 -25.667 8.73 5.774 1 101.35 ? O1B DTP 600 A 1 HETATM 7 O O2B DTP . . . B 2 -23.739 9.99 6.858 1 101.35 ? O2B DTP 600 A 1 HETATM 8 O O3B DTP . . . B 2 -24.236 7.59 7.56 1 101.35 ? O3B DTP 600 A 1 HETATM 9 P PA DTP . . . B 2 -26.808 8.12 8.901 1 101.35 ? PA DTP 600 A 1 HETATM 10 O O1A DTP . . . B 2 -26.325 6.827 9.428 1 101.35 ? O1A DTP 600 A 1 HETATM 11 O O2A DTP . . . B 2 -28.248 8.238 8.196 1 101.35 ? O2A DTP 600 A 1 HETATM 12 O O3A DTP . . . B 2 -25.816 9.253 8.358 1 101.35 ? O3A DTP 600 A 1 HETATM 13 O O5' DTP . . . B 2 -27.304 8.738 10.299 1 101.35 ? O5' DTP 600 A 1 HETATM 14 C C5' DTP . . . B 2 -26.939 9.999 10.862 1 101.35 ? C5' DTP 600 A 1 HETATM 15 C C4' DTP . . . B 2 -27.434 10.063 12.315 1 101.35 ? C4' DTP 600 A 1 HETATM 16 O O4' DTP . . . B 2 -28.736 9.451 12.414 1 101.35 ? O4' DTP 600 A 1 HETATM 17 C C3' DTP . . . B 2 -26.567 9.229 13.261 1 101.35 ? C3' DTP 600 A 1 HETATM 18 O O3' DTP . . . B 2 -25.447 10.037 13.614 1 101.35 ? O3' DTP 600 A 1 HETATM 19 C C2' DTP . . . B 2 -27.537 9.21 14.445 1 101.35 ? C2' DTP 600 A 1 HETATM 20 C C1' DTP . . . B 2 -28.859 8.89 13.737 1 101.35 ? C1' DTP 600 A 1 HETATM 21 N N9 DTP . . . B 2 -28.991 7.427 13.545 1 101.35 ? N9 DTP 600 A 1 HETATM 22 C C8 DTP . . . B 2 -28.63 6.782 12.434 1 101.35 ? C8 DTP 600 A 1 HETATM 23 N N7 DTP . . . B 2 -28.96 5.488 12.568 1 101.35 ? N7 DTP 600 A 1 HETATM 24 C C5 DTP . . . B 2 -29.585 5.34 13.737 1 101.35 ? C5 DTP 600 A 1 HETATM 25 C C6 DTP . . . B 2 -30.176 4.262 14.379 1 101.35 ? C6 DTP 600 A 1 HETATM 26 N N6 DTP . . . B 2 -30.191 3.048 13.822 1 101.35 ? N6 DTP 600 A 1 HETATM 27 N N1 DTP . . . B 2 -30.716 4.464 15.586 1 101.35 ? N1 DTP 600 A 1 HETATM 28 C C2 DTP . . . B 2 -30.724 5.66 16.168 1 101.35 ? C2 DTP 600 A 1 HETATM 29 N N3 DTP . . . B 2 -30.151 6.701 15.57 1 101.35 ? N3 DTP 600 A 1 HETATM 30 C C4 DTP . . . B 2 -29.62 6.623 14.363 1 101.35 ? C4 DTP 600 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #