data_2ZRZ # _model_server_result.job_id oUUhRPyFKoRZIWfWNJ7zQg _model_server_result.datetime_utc '2024-11-26 04:38:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 2ZRZ # _exptl.entry_id 2ZRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.092 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYLALLYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZRZ _cell.length_a 100.879 _cell.length_b 100.879 _cell.length_c 334.864 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 161 A GLU 161 1_555 G MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 F O2A DMA . A DMA 701 1_555 G MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 F O2B DMA . A DMA 701 1_555 G MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc4 B OE1 GLU 161 B GLU 161 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 I O2A DMA . B DMA 701 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 I O1B DMA . B DMA 701 1_555 J MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc7 C OE1 GLU 161 C GLU 161 1_555 M MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc8 L O2A DMA . C DMA 701 1_555 M MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc9 L O1B DMA . C DMA 701 1_555 M MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc10 D OE1 GLU 161 D GLU 161 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 O O2A DMA . D DMA 701 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 O O1B DMA . D DMA 701 1_555 P MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C5 H12 O7 P2' _chem_comp.formula_weight 246.092 _chem_comp.id DMA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYLALLYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DMA sing 70 n n C1 C2 DMA sing 71 n n C1 H11 DMA sing 72 n n C1 H12 DMA sing 73 n n O1 PA DMA sing 74 n n C2 C3 DMA doub 75 n n C2 H2 DMA sing 76 n n C3 C4 DMA sing 77 n n C3 C5 DMA sing 78 n n C4 H41 DMA sing 79 n n C4 H42 DMA sing 80 n n C4 H43 DMA sing 81 n n C5 H51 DMA sing 82 n n C5 H52 DMA sing 83 n n C5 H53 DMA sing 84 n n PA O1A DMA doub 85 n n PA O2A DMA sing 86 n n PA O3A DMA sing 87 n n O2A HOA2 DMA sing 88 n n O3A PB DMA sing 89 n n PB O1B DMA doub 90 n n PB O2B DMA sing 91 n n PB O3B DMA sing 92 n n O2B HOB2 DMA sing 93 n n O3B HOB3 DMA sing 94 n n # _atom_sites.entry_id 2ZRZ _atom_sites.fract_transf_matrix[1][1] 0.009913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FNR A 1 669 669 FNR FNR . F 3 DMA A 1 701 701 DMA DMP . G 4 MG A 1 702 1 MG MG . H 2 FNR B 1 669 669 FNR FNR . I 3 DMA B 1 701 701 DMA DMP . J 4 MG B 1 702 2 MG MG . K 2 FNR C 1 669 669 FNR FNR . L 3 DMA C 1 701 701 DMA DMP . M 4 MG C 1 702 3 MG MG . N 2 FNR D 1 669 669 FNR FNR . O 3 DMA D 1 701 701 DMA DMP . P 4 MG D 1 702 4 MG MG . Q 5 HOH A 1 703 3 HOH HOH . Q 5 HOH A 2 704 6 HOH HOH . Q 5 HOH A 3 705 8 HOH HOH . Q 5 HOH A 4 706 13 HOH HOH . Q 5 HOH A 5 707 22 HOH HOH . Q 5 HOH A 6 708 23 HOH HOH . Q 5 HOH A 7 709 24 HOH HOH . Q 5 HOH A 8 710 26 HOH HOH . Q 5 HOH A 9 711 30 HOH HOH . Q 5 HOH A 10 712 35 HOH HOH . Q 5 HOH A 11 713 41 HOH HOH . Q 5 HOH A 12 714 46 HOH HOH . Q 5 HOH A 13 715 48 HOH HOH . Q 5 HOH A 14 716 56 HOH HOH . Q 5 HOH A 15 717 58 HOH HOH . Q 5 HOH A 16 718 59 HOH HOH . Q 5 HOH A 17 719 60 HOH HOH . Q 5 HOH A 18 720 63 HOH HOH . Q 5 HOH A 19 721 66 HOH HOH . Q 5 HOH A 20 722 72 HOH HOH . Q 5 HOH A 21 723 74 HOH HOH . Q 5 HOH A 22 724 86 HOH HOH . Q 5 HOH A 23 725 89 HOH HOH . Q 5 HOH A 24 726 94 HOH HOH . Q 5 HOH A 25 727 96 HOH HOH . Q 5 HOH A 26 728 98 HOH HOH . Q 5 HOH A 27 729 99 HOH HOH . Q 5 HOH A 28 730 104 HOH HOH . Q 5 HOH A 29 731 107 HOH HOH . Q 5 HOH A 30 732 112 HOH HOH . Q 5 HOH A 31 733 113 HOH HOH . Q 5 HOH A 32 734 114 HOH HOH . Q 5 HOH A 33 735 121 HOH HOH . Q 5 HOH A 34 736 123 HOH HOH . Q 5 HOH A 35 737 124 HOH HOH . Q 5 HOH A 36 738 127 HOH HOH . Q 5 HOH A 37 739 129 HOH HOH . Q 5 HOH A 38 740 138 HOH HOH . Q 5 HOH A 39 741 145 HOH HOH . Q 5 HOH A 40 742 146 HOH HOH . Q 5 HOH A 41 743 151 HOH HOH . Q 5 HOH A 42 744 163 HOH HOH . Q 5 HOH A 43 745 164 HOH HOH . Q 5 HOH A 44 746 169 HOH HOH . R 5 HOH B 1 703 2 HOH HOH . R 5 HOH B 2 704 4 HOH HOH . R 5 HOH B 3 705 5 HOH HOH . R 5 HOH B 4 706 10 HOH HOH . R 5 HOH B 5 707 14 HOH HOH . R 5 HOH B 6 708 15 HOH HOH . R 5 HOH B 7 709 17 HOH HOH . R 5 HOH B 8 710 28 HOH HOH . R 5 HOH B 9 711 31 HOH HOH . R 5 HOH B 10 712 34 HOH HOH . R 5 HOH B 11 713 36 HOH HOH . R 5 HOH B 12 714 38 HOH HOH . R 5 HOH B 13 715 40 HOH HOH . R 5 HOH B 14 716 43 HOH HOH . R 5 HOH B 15 717 47 HOH HOH . R 5 HOH B 16 718 52 HOH HOH . R 5 HOH B 17 719 62 HOH HOH . R 5 HOH B 18 720 68 HOH HOH . R 5 HOH B 19 721 71 HOH HOH . R 5 HOH B 20 722 73 HOH HOH . R 5 HOH B 21 723 76 HOH HOH . R 5 HOH B 22 724 77 HOH HOH . R 5 HOH B 23 725 79 HOH HOH . R 5 HOH B 24 726 82 HOH HOH . R 5 HOH B 25 727 87 HOH HOH . R 5 HOH B 26 729 93 HOH HOH . R 5 HOH B 27 730 95 HOH HOH . R 5 HOH B 28 731 108 HOH HOH . R 5 HOH B 29 732 109 HOH HOH . R 5 HOH B 30 733 116 HOH HOH . R 5 HOH B 31 734 119 HOH HOH . R 5 HOH B 32 735 125 HOH HOH . R 5 HOH B 33 736 126 HOH HOH . R 5 HOH B 34 737 128 HOH HOH . R 5 HOH B 35 738 131 HOH HOH . R 5 HOH B 36 739 132 HOH HOH . R 5 HOH B 37 740 134 HOH HOH . R 5 HOH B 38 741 135 HOH HOH . R 5 HOH B 39 742 136 HOH HOH . R 5 HOH B 40 743 144 HOH HOH . R 5 HOH B 41 744 147 HOH HOH . R 5 HOH B 42 745 149 HOH HOH . R 5 HOH B 43 746 152 HOH HOH . R 5 HOH B 44 747 155 HOH HOH . R 5 HOH B 45 748 160 HOH HOH . R 5 HOH B 46 749 161 HOH HOH . R 5 HOH B 47 750 170 HOH HOH . S 5 HOH C 1 703 1 HOH HOH . S 5 HOH C 2 704 12 HOH HOH . S 5 HOH C 3 705 16 HOH HOH . S 5 HOH C 4 706 18 HOH HOH . S 5 HOH C 5 707 21 HOH HOH . S 5 HOH C 6 708 27 HOH HOH . S 5 HOH C 7 709 29 HOH HOH . S 5 HOH C 8 710 32 HOH HOH . S 5 HOH C 9 711 33 HOH HOH . S 5 HOH C 10 712 37 HOH HOH . S 5 HOH C 11 713 39 HOH HOH . S 5 HOH C 12 714 42 HOH HOH . S 5 HOH C 13 715 45 HOH HOH . S 5 HOH C 14 716 49 HOH HOH . S 5 HOH C 15 717 50 HOH HOH . S 5 HOH C 16 718 54 HOH HOH . S 5 HOH C 17 719 67 HOH HOH . S 5 HOH C 18 720 80 HOH HOH . S 5 HOH C 19 721 81 HOH HOH . S 5 HOH C 20 722 83 HOH HOH . S 5 HOH C 21 723 85 HOH HOH . S 5 HOH C 22 724 88 HOH HOH . S 5 HOH C 23 725 90 HOH HOH . S 5 HOH C 24 726 91 HOH HOH . S 5 HOH C 25 727 101 HOH HOH . S 5 HOH C 26 728 102 HOH HOH . S 5 HOH C 27 729 105 HOH HOH . S 5 HOH C 28 730 106 HOH HOH . S 5 HOH C 29 731 111 HOH HOH . S 5 HOH C 30 732 115 HOH HOH . S 5 HOH C 31 733 117 HOH HOH . S 5 HOH C 32 734 120 HOH HOH . S 5 HOH C 33 735 137 HOH HOH . S 5 HOH C 34 736 140 HOH HOH . S 5 HOH C 35 737 142 HOH HOH . S 5 HOH C 36 738 148 HOH HOH . S 5 HOH C 37 739 154 HOH HOH . S 5 HOH C 38 740 157 HOH HOH . S 5 HOH C 39 741 166 HOH HOH . S 5 HOH C 40 742 168 HOH HOH . S 5 HOH C 41 743 172 HOH HOH . T 5 HOH D 1 728 92 HOH HOH . T 5 HOH D 2 729 7 HOH HOH . T 5 HOH D 3 730 9 HOH HOH . T 5 HOH D 4 731 11 HOH HOH . T 5 HOH D 5 732 19 HOH HOH . T 5 HOH D 6 733 20 HOH HOH . T 5 HOH D 7 734 25 HOH HOH . T 5 HOH D 8 735 44 HOH HOH . T 5 HOH D 9 736 51 HOH HOH . T 5 HOH D 10 737 53 HOH HOH . T 5 HOH D 11 738 55 HOH HOH . T 5 HOH D 12 739 57 HOH HOH . T 5 HOH D 13 740 61 HOH HOH . T 5 HOH D 14 741 64 HOH HOH . T 5 HOH D 15 742 65 HOH HOH . T 5 HOH D 16 743 69 HOH HOH . T 5 HOH D 17 744 70 HOH HOH . T 5 HOH D 18 745 75 HOH HOH . T 5 HOH D 19 746 78 HOH HOH . T 5 HOH D 20 747 84 HOH HOH . T 5 HOH D 21 748 97 HOH HOH . T 5 HOH D 22 749 100 HOH HOH . T 5 HOH D 23 750 103 HOH HOH . T 5 HOH D 24 751 110 HOH HOH . T 5 HOH D 25 752 118 HOH HOH . T 5 HOH D 26 753 122 HOH HOH . T 5 HOH D 27 754 130 HOH HOH . T 5 HOH D 28 755 133 HOH HOH . T 5 HOH D 29 756 139 HOH HOH . T 5 HOH D 30 757 141 HOH HOH . T 5 HOH D 31 758 143 HOH HOH . T 5 HOH D 32 759 150 HOH HOH . T 5 HOH D 33 760 153 HOH HOH . T 5 HOH D 34 761 156 HOH HOH . T 5 HOH D 35 762 158 HOH HOH . T 5 HOH D 36 763 159 HOH HOH . T 5 HOH D 37 764 162 HOH HOH . T 5 HOH D 38 765 165 HOH HOH . T 5 HOH D 39 766 167 HOH HOH . T 5 HOH D 40 767 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMA . . . I 3 17.514 47.67 17.33 1 68.41 ? C1 DMA 701 B 1 HETATM 2 O O1 DMA . . . I 3 17.312 49.077 17.497 1 69.18 ? O1 DMA 701 B 1 HETATM 3 C C2 DMA . . . I 3 18.991 47.357 17.411 1 66.79 ? C2 DMA 701 B 1 HETATM 4 C C3 DMA . . . I 3 19.666 47.199 18.561 1 65.38 ? C3 DMA 701 B 1 HETATM 5 C C4 DMA . . . I 3 21.125 46.89 18.477 1 64.11 ? C4 DMA 701 B 1 HETATM 6 C C5 DMA . . . I 3 19.007 47.327 19.905 1 65.15 ? C5 DMA 701 B 1 HETATM 7 P PA DMA . . . I 3 15.876 49.765 17.22 1 69.38 ? PA DMA 701 B 1 HETATM 8 O O1A DMA . . . I 3 15.577 49.57 15.737 1 69.58 ? O1A DMA 701 B 1 HETATM 9 O O2A DMA . . . I 3 15.96 51.156 17.819 1 67.9 ? O2A DMA 701 B 1 HETATM 10 O O3A DMA . . . I 3 14.894 48.806 18.106 1 68.82 ? O3A DMA 701 B 1 HETATM 11 P PB DMA . . . I 3 13.344 49.052 18.508 1 67.5 ? PB DMA 701 B 1 HETATM 12 O O1B DMA . . . I 3 13.221 50.567 18.462 1 67.1 ? O1B DMA 701 B 1 HETATM 13 O O2B DMA . . . I 3 13.278 48.435 19.893 1 67.2 ? O2B DMA 701 B 1 HETATM 14 O O3B DMA . . . I 3 12.528 48.29 17.489 1 66.88 ? O3B DMA 701 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #