data_2ZS8 # _model_server_result.job_id T9nQxf4FtlyOi2me3oi9ow _model_server_result.datetime_utc '2024-10-11 13:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 2ZS8 # _exptl.entry_id 2ZS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZS8 _cell.length_a 104.17 _cell.length_b 104.17 _cell.length_c 90.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 90.54 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 2ZS8 _atom_sites.fract_transf_matrix[1][1] 0.0096 _atom_sites.fract_transf_matrix[1][2] 0.005542 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 315 315 ADP ADP . C 3 GOL A 1 700 700 GOL GOL . D 3 GOL A 1 701 701 GOL GOL . E 3 GOL A 1 702 702 GOL GOL . F 3 GOL A 1 703 703 GOL GOL . G 3 GOL A 1 704 704 GOL GOL . H 4 HOH A 1 320 320 HOH HOH . H 4 HOH A 2 321 321 HOH HOH . H 4 HOH A 3 322 322 HOH HOH . H 4 HOH A 4 323 323 HOH HOH . H 4 HOH A 5 324 324 HOH HOH . H 4 HOH A 6 325 325 HOH HOH . H 4 HOH A 7 326 326 HOH HOH . H 4 HOH A 8 327 327 HOH HOH . H 4 HOH A 9 328 328 HOH HOH . H 4 HOH A 10 332 332 HOH HOH . H 4 HOH A 11 333 333 HOH HOH . H 4 HOH A 12 334 334 HOH HOH . H 4 HOH A 13 335 335 HOH HOH . H 4 HOH A 14 336 336 HOH HOH . H 4 HOH A 15 338 338 HOH HOH . H 4 HOH A 16 339 339 HOH HOH . H 4 HOH A 17 340 340 HOH HOH . H 4 HOH A 18 341 341 HOH HOH . H 4 HOH A 19 342 342 HOH HOH . H 4 HOH A 20 343 343 HOH HOH . H 4 HOH A 21 344 344 HOH HOH . H 4 HOH A 22 345 345 HOH HOH . H 4 HOH A 23 346 346 HOH HOH . H 4 HOH A 24 349 349 HOH HOH . H 4 HOH A 25 350 350 HOH HOH . H 4 HOH A 26 351 351 HOH HOH . H 4 HOH A 27 352 352 HOH HOH . H 4 HOH A 28 353 353 HOH HOH . H 4 HOH A 29 354 354 HOH HOH . H 4 HOH A 30 356 356 HOH HOH . H 4 HOH A 31 358 358 HOH HOH . H 4 HOH A 32 359 359 HOH HOH . H 4 HOH A 33 361 361 HOH HOH . H 4 HOH A 34 362 362 HOH HOH . H 4 HOH A 35 363 363 HOH HOH . H 4 HOH A 36 364 364 HOH HOH . H 4 HOH A 37 365 365 HOH HOH . H 4 HOH A 38 366 366 HOH HOH . H 4 HOH A 39 367 367 HOH HOH . H 4 HOH A 40 369 369 HOH HOH . H 4 HOH A 41 370 370 HOH HOH . H 4 HOH A 42 374 374 HOH HOH . H 4 HOH A 43 375 375 HOH HOH . H 4 HOH A 44 376 376 HOH HOH . H 4 HOH A 45 377 377 HOH HOH . H 4 HOH A 46 378 378 HOH HOH . H 4 HOH A 47 379 379 HOH HOH . H 4 HOH A 48 381 381 HOH HOH . H 4 HOH A 49 384 384 HOH HOH . H 4 HOH A 50 385 385 HOH HOH . H 4 HOH A 51 389 389 HOH HOH . H 4 HOH A 52 390 390 HOH HOH . H 4 HOH A 53 392 392 HOH HOH . H 4 HOH A 54 393 393 HOH HOH . H 4 HOH A 55 394 394 HOH HOH . H 4 HOH A 56 396 396 HOH HOH . H 4 HOH A 57 399 399 HOH HOH . H 4 HOH A 58 400 400 HOH HOH . H 4 HOH A 59 401 401 HOH HOH . H 4 HOH A 60 402 402 HOH HOH . H 4 HOH A 61 403 403 HOH HOH . H 4 HOH A 62 404 404 HOH HOH . H 4 HOH A 63 405 405 HOH HOH . H 4 HOH A 64 407 407 HOH HOH . H 4 HOH A 65 408 408 HOH HOH . H 4 HOH A 66 409 409 HOH HOH . H 4 HOH A 67 410 410 HOH HOH . H 4 HOH A 68 411 411 HOH HOH . H 4 HOH A 69 412 412 HOH HOH . H 4 HOH A 70 413 413 HOH HOH . H 4 HOH A 71 414 414 HOH HOH . H 4 HOH A 72 416 416 HOH HOH . H 4 HOH A 73 417 417 HOH HOH . H 4 HOH A 74 418 418 HOH HOH . H 4 HOH A 75 419 419 HOH HOH . H 4 HOH A 76 420 420 HOH HOH . H 4 HOH A 77 421 421 HOH HOH . H 4 HOH A 78 422 422 HOH HOH . H 4 HOH A 79 423 423 HOH HOH . H 4 HOH A 80 424 424 HOH HOH . H 4 HOH A 81 426 426 HOH HOH . H 4 HOH A 82 428 428 HOH HOH . H 4 HOH A 83 429 429 HOH HOH . H 4 HOH A 84 435 435 HOH HOH . H 4 HOH A 85 436 436 HOH HOH . H 4 HOH A 86 437 437 HOH HOH . H 4 HOH A 87 439 439 HOH HOH . H 4 HOH A 88 441 441 HOH HOH . H 4 HOH A 89 442 442 HOH HOH . H 4 HOH A 90 443 443 HOH HOH . H 4 HOH A 91 444 444 HOH HOH . H 4 HOH A 92 445 445 HOH HOH . H 4 HOH A 93 449 449 HOH HOH . H 4 HOH A 94 450 450 HOH HOH . H 4 HOH A 95 452 452 HOH HOH . H 4 HOH A 96 454 454 HOH HOH . H 4 HOH A 97 455 455 HOH HOH . H 4 HOH A 98 456 456 HOH HOH . H 4 HOH A 99 457 457 HOH HOH . H 4 HOH A 100 459 459 HOH HOH . H 4 HOH A 101 462 462 HOH HOH . H 4 HOH A 102 465 465 HOH HOH . H 4 HOH A 103 467 467 HOH HOH . H 4 HOH A 104 468 468 HOH HOH . H 4 HOH A 105 469 469 HOH HOH . H 4 HOH A 106 470 470 HOH HOH . H 4 HOH A 107 474 474 HOH HOH . H 4 HOH A 108 475 475 HOH HOH . H 4 HOH A 109 478 478 HOH HOH . H 4 HOH A 110 479 479 HOH HOH . H 4 HOH A 111 480 480 HOH HOH . H 4 HOH A 112 481 481 HOH HOH . H 4 HOH A 113 482 482 HOH HOH . H 4 HOH A 114 483 483 HOH HOH . H 4 HOH A 115 484 484 HOH HOH . H 4 HOH A 116 486 486 HOH HOH . H 4 HOH A 117 489 489 HOH HOH . H 4 HOH A 118 490 490 HOH HOH . H 4 HOH A 119 491 491 HOH HOH . H 4 HOH A 120 492 492 HOH HOH . H 4 HOH A 121 503 503 HOH HOH . H 4 HOH A 122 504 504 HOH HOH . H 4 HOH A 123 508 508 HOH HOH . H 4 HOH A 124 530 530 HOH HOH . H 4 HOH A 125 542 542 HOH HOH . H 4 HOH A 126 545 545 HOH HOH . H 4 HOH A 127 546 546 HOH HOH . H 4 HOH A 128 547 547 HOH HOH . H 4 HOH A 129 548 548 HOH HOH . H 4 HOH A 130 551 551 HOH HOH . H 4 HOH A 131 552 552 HOH HOH . H 4 HOH A 132 556 556 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -2.831 52.959 49.917 1 82.48 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . F 3 -3.345 54.17 49.356 1 82.48 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . F 3 -2.1 52.211 48.803 1 82.48 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . F 3 -1.172 53.109 48.187 1 82.48 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . F 3 -1.408 50.948 49.323 1 82.48 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . F 3 -0.5 51.241 50.389 1 82.48 ? O3 GOL 703 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #