data_2ZS9 # _model_server_result.job_id BDLxkipoC1f-hrStDqdYpQ _model_server_result.datetime_utc '2024-10-11 13:28:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":707}' # _entry.id 2ZS9 # _exptl.entry_id 2ZS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZS9 _cell.length_a 104.194 _cell.length_b 104.194 _cell.length_c 90.304 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 90.304 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 48 A GLU 48 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc2 A O THR 127 A THR 127 1_555 L NA NA . A NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc3 A O SER 215 A SER 215 1_555 M NA NA . A NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc4 O O HOH . A HOH 401 1_555 L NA NA . A NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 O O HOH . A HOH 404 1_555 L NA NA . A NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc6 O O HOH . A HOH 478 1_555 M NA NA . A NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc7 D O3 GOL . A GOL 701 1_555 M NA NA . A NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 2ZS9 _atom_sites.fract_transf_matrix[1][1] 0.009597 _atom_sites.fract_transf_matrix[1][2] 0.005541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 315 315 ADP ADP . C 3 GOL A 1 700 700 GOL GOL . D 3 GOL A 1 701 701 GOL GOL . E 3 GOL A 1 702 702 GOL GOL . F 3 GOL A 1 703 703 GOL GOL . G 3 GOL A 1 704 704 GOL GOL . H 3 GOL A 1 705 705 GOL GOL . I 3 GOL A 1 706 706 GOL GOL . J 3 GOL A 1 707 707 GOL GOL . K 4 NA A 1 708 1 NA NA . L 4 NA A 1 709 2 NA NA . M 4 NA A 1 710 3 NA NA . N 5 PAU A 1 603 603 PAU PAU . O 6 HOH A 1 320 320 HOH HOH . O 6 HOH A 2 321 321 HOH HOH . O 6 HOH A 3 322 322 HOH HOH . O 6 HOH A 4 323 323 HOH HOH . O 6 HOH A 5 324 324 HOH HOH . O 6 HOH A 6 325 325 HOH HOH . O 6 HOH A 7 326 326 HOH HOH . O 6 HOH A 8 327 327 HOH HOH . O 6 HOH A 9 328 328 HOH HOH . O 6 HOH A 10 329 329 HOH HOH . O 6 HOH A 11 330 330 HOH HOH . O 6 HOH A 12 331 331 HOH HOH . O 6 HOH A 13 332 332 HOH HOH . O 6 HOH A 14 333 333 HOH HOH . O 6 HOH A 15 334 334 HOH HOH . O 6 HOH A 16 335 335 HOH HOH . O 6 HOH A 17 336 336 HOH HOH . O 6 HOH A 18 337 337 HOH HOH . O 6 HOH A 19 338 338 HOH HOH . O 6 HOH A 20 339 339 HOH HOH . O 6 HOH A 21 340 340 HOH HOH . O 6 HOH A 22 341 341 HOH HOH . O 6 HOH A 23 342 342 HOH HOH . O 6 HOH A 24 343 343 HOH HOH . O 6 HOH A 25 344 344 HOH HOH . O 6 HOH A 26 345 345 HOH HOH . O 6 HOH A 27 346 346 HOH HOH . O 6 HOH A 28 347 347 HOH HOH . O 6 HOH A 29 348 348 HOH HOH . O 6 HOH A 30 349 349 HOH HOH . O 6 HOH A 31 350 350 HOH HOH . O 6 HOH A 32 351 351 HOH HOH . O 6 HOH A 33 352 352 HOH HOH . O 6 HOH A 34 353 353 HOH HOH . O 6 HOH A 35 354 354 HOH HOH . O 6 HOH A 36 355 355 HOH HOH . O 6 HOH A 37 356 356 HOH HOH . O 6 HOH A 38 357 357 HOH HOH . O 6 HOH A 39 358 358 HOH HOH . O 6 HOH A 40 359 359 HOH HOH . O 6 HOH A 41 360 360 HOH HOH . O 6 HOH A 42 361 361 HOH HOH . O 6 HOH A 43 362 362 HOH HOH . O 6 HOH A 44 363 363 HOH HOH . O 6 HOH A 45 364 364 HOH HOH . O 6 HOH A 46 365 365 HOH HOH . O 6 HOH A 47 366 366 HOH HOH . O 6 HOH A 48 367 367 HOH HOH . O 6 HOH A 49 368 368 HOH HOH . O 6 HOH A 50 369 369 HOH HOH . O 6 HOH A 51 370 370 HOH HOH . O 6 HOH A 52 371 371 HOH HOH . O 6 HOH A 53 372 372 HOH HOH . O 6 HOH A 54 373 373 HOH HOH . O 6 HOH A 55 374 374 HOH HOH . O 6 HOH A 56 375 375 HOH HOH . O 6 HOH A 57 376 376 HOH HOH . O 6 HOH A 58 377 377 HOH HOH . O 6 HOH A 59 378 378 HOH HOH . O 6 HOH A 60 379 379 HOH HOH . O 6 HOH A 61 380 380 HOH HOH . O 6 HOH A 62 381 381 HOH HOH . O 6 HOH A 63 382 382 HOH HOH . O 6 HOH A 64 383 383 HOH HOH . O 6 HOH A 65 384 384 HOH HOH . O 6 HOH A 66 385 385 HOH HOH . O 6 HOH A 67 386 386 HOH HOH . O 6 HOH A 68 387 387 HOH HOH . O 6 HOH A 69 388 388 HOH HOH . O 6 HOH A 70 389 389 HOH HOH . O 6 HOH A 71 390 390 HOH HOH . O 6 HOH A 72 391 391 HOH HOH . O 6 HOH A 73 392 392 HOH HOH . O 6 HOH A 74 393 393 HOH HOH . O 6 HOH A 75 394 394 HOH HOH . O 6 HOH A 76 395 395 HOH HOH . O 6 HOH A 77 396 396 HOH HOH . O 6 HOH A 78 397 397 HOH HOH . O 6 HOH A 79 398 398 HOH HOH . O 6 HOH A 80 399 399 HOH HOH . O 6 HOH A 81 400 400 HOH HOH . O 6 HOH A 82 401 401 HOH HOH . O 6 HOH A 83 402 402 HOH HOH . O 6 HOH A 84 403 403 HOH HOH . O 6 HOH A 85 404 404 HOH HOH . O 6 HOH A 86 405 405 HOH HOH . O 6 HOH A 87 406 406 HOH HOH . O 6 HOH A 88 407 407 HOH HOH . O 6 HOH A 89 408 408 HOH HOH . O 6 HOH A 90 409 409 HOH HOH . O 6 HOH A 91 410 410 HOH HOH . O 6 HOH A 92 411 411 HOH HOH . O 6 HOH A 93 412 412 HOH HOH . O 6 HOH A 94 413 413 HOH HOH . O 6 HOH A 95 414 414 HOH HOH . O 6 HOH A 96 415 415 HOH HOH . O 6 HOH A 97 416 416 HOH HOH . O 6 HOH A 98 417 417 HOH HOH . O 6 HOH A 99 418 418 HOH HOH . O 6 HOH A 100 419 419 HOH HOH . O 6 HOH A 101 420 420 HOH HOH . O 6 HOH A 102 421 421 HOH HOH . O 6 HOH A 103 422 422 HOH HOH . O 6 HOH A 104 423 423 HOH HOH . O 6 HOH A 105 424 424 HOH HOH . O 6 HOH A 106 425 425 HOH HOH . O 6 HOH A 107 426 426 HOH HOH . O 6 HOH A 108 427 427 HOH HOH . O 6 HOH A 109 428 428 HOH HOH . O 6 HOH A 110 429 429 HOH HOH . O 6 HOH A 111 430 430 HOH HOH . O 6 HOH A 112 431 431 HOH HOH . O 6 HOH A 113 432 432 HOH HOH . O 6 HOH A 114 433 433 HOH HOH . O 6 HOH A 115 434 434 HOH HOH . O 6 HOH A 116 435 435 HOH HOH . O 6 HOH A 117 436 436 HOH HOH . O 6 HOH A 118 437 437 HOH HOH . O 6 HOH A 119 438 438 HOH HOH . O 6 HOH A 120 439 439 HOH HOH . O 6 HOH A 121 440 440 HOH HOH . O 6 HOH A 122 441 441 HOH HOH . O 6 HOH A 123 442 442 HOH HOH . O 6 HOH A 124 443 443 HOH HOH . O 6 HOH A 125 444 444 HOH HOH . O 6 HOH A 126 445 445 HOH HOH . O 6 HOH A 127 446 446 HOH HOH . O 6 HOH A 128 447 447 HOH HOH . O 6 HOH A 129 448 448 HOH HOH . O 6 HOH A 130 449 449 HOH HOH . O 6 HOH A 131 450 450 HOH HOH . O 6 HOH A 132 451 451 HOH HOH . O 6 HOH A 133 452 452 HOH HOH . O 6 HOH A 134 453 453 HOH HOH . O 6 HOH A 135 454 454 HOH HOH . O 6 HOH A 136 455 455 HOH HOH . O 6 HOH A 137 456 456 HOH HOH . O 6 HOH A 138 457 457 HOH HOH . O 6 HOH A 139 458 458 HOH HOH . O 6 HOH A 140 459 459 HOH HOH . O 6 HOH A 141 460 460 HOH HOH . O 6 HOH A 142 461 461 HOH HOH . O 6 HOH A 143 462 462 HOH HOH . O 6 HOH A 144 463 463 HOH HOH . O 6 HOH A 145 464 464 HOH HOH . O 6 HOH A 146 465 465 HOH HOH . O 6 HOH A 147 466 466 HOH HOH . O 6 HOH A 148 467 467 HOH HOH . O 6 HOH A 149 468 468 HOH HOH . O 6 HOH A 150 469 469 HOH HOH . O 6 HOH A 151 470 470 HOH HOH . O 6 HOH A 152 471 471 HOH HOH . O 6 HOH A 153 472 472 HOH HOH . O 6 HOH A 154 473 473 HOH HOH . O 6 HOH A 155 474 474 HOH HOH . O 6 HOH A 156 475 475 HOH HOH . O 6 HOH A 157 476 476 HOH HOH . O 6 HOH A 158 477 477 HOH HOH . O 6 HOH A 159 478 478 HOH HOH . O 6 HOH A 160 479 479 HOH HOH . O 6 HOH A 161 480 480 HOH HOH . O 6 HOH A 162 481 481 HOH HOH . O 6 HOH A 163 482 482 HOH HOH . O 6 HOH A 164 483 483 HOH HOH . O 6 HOH A 165 484 484 HOH HOH . O 6 HOH A 166 485 485 HOH HOH . O 6 HOH A 167 486 486 HOH HOH . O 6 HOH A 168 487 487 HOH HOH . O 6 HOH A 169 488 488 HOH HOH . O 6 HOH A 170 489 489 HOH HOH . O 6 HOH A 171 490 490 HOH HOH . O 6 HOH A 172 491 491 HOH HOH . O 6 HOH A 173 492 492 HOH HOH . O 6 HOH A 174 493 493 HOH HOH . O 6 HOH A 175 494 494 HOH HOH . O 6 HOH A 176 495 495 HOH HOH . O 6 HOH A 177 496 496 HOH HOH . O 6 HOH A 178 497 497 HOH HOH . O 6 HOH A 179 498 498 HOH HOH . O 6 HOH A 180 499 499 HOH HOH . O 6 HOH A 181 500 500 HOH HOH . O 6 HOH A 182 501 501 HOH HOH . O 6 HOH A 183 502 502 HOH HOH . O 6 HOH A 184 503 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 7.338 54.086 65.315 1 84.08 ? C1 GOL 707 A 1 HETATM 2 O O1 GOL . . . J 3 8.532 54.614 65.899 1 84.08 ? O1 GOL 707 A 1 HETATM 3 C C2 GOL . . . J 3 7.032 54.827 64.011 1 84.08 ? C2 GOL 707 A 1 HETATM 4 O O2 GOL . . . J 3 8.143 54.695 63.121 1 84.08 ? O2 GOL 707 A 1 HETATM 5 C C3 GOL . . . J 3 5.779 54.236 63.36 1 84.08 ? C3 GOL 707 A 1 HETATM 6 O O3 GOL . . . J 3 5.993 52.855 63.054 1 84.08 ? O3 GOL 707 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #