data_2ZSF # _model_server_result.job_id rBxxEC_YnukerXQUcqyhZA _model_server_result.datetime_utc '2024-12-30 17:00:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":651}' # _entry.id 2ZSF # _exptl.entry_id 2ZSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZSF _cell.length_a 104.219 _cell.length_b 104.219 _cell.length_c 90.646 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 90.646 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 124 A ASP 124 1_555 K NA NA . A NA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 O O HOH . A HOH 388 1_555 K NA NA . A NA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 120 n n PG O2G ATP sing 121 n n PG O3G ATP sing 122 n n PG O3B ATP sing 123 n n O2G HOG2 ATP sing 124 n n O3G HOG3 ATP sing 125 n n PB O1B ATP doub 126 n n PB O2B ATP sing 127 n n PB O3B ATP sing 128 n n PB O3A ATP sing 129 n n O2B HOB2 ATP sing 130 n n PA O1A ATP doub 131 n n PA O2A ATP sing 132 n n PA O3A ATP sing 133 n n PA O5' ATP sing 134 n n O2A HOA2 ATP sing 135 n n O5' C5' ATP sing 136 n n C5' C4' ATP sing 137 n n C5' "H5'1" ATP sing 138 n n C5' "H5'2" ATP sing 139 n n C4' O4' ATP sing 140 n n C4' C3' ATP sing 141 n n C4' H4' ATP sing 142 n n O4' C1' ATP sing 143 n n C3' O3' ATP sing 144 n n C3' C2' ATP sing 145 n n C3' H3' ATP sing 146 n n O3' HO3' ATP sing 147 n n C2' O2' ATP sing 148 n n C2' C1' ATP sing 149 n n C2' H2' ATP sing 150 n n O2' HO2' ATP sing 151 n n C1' N9 ATP sing 152 n n C1' H1' ATP sing 153 n n N9 C8 ATP sing 154 n y N9 C4 ATP sing 155 n y C8 N7 ATP doub 156 n y C8 H8 ATP sing 157 n n N7 C5 ATP sing 158 n y C5 C6 ATP sing 159 n y C5 C4 ATP doub 160 n y C6 N6 ATP sing 161 n n C6 N1 ATP doub 162 n y N6 HN61 ATP sing 163 n n N6 HN62 ATP sing 164 n n N1 C2 ATP sing 165 n y C2 N3 ATP doub 166 n y C2 H2 ATP sing 167 n n N3 C4 ATP sing 168 n y # _atom_sites.entry_id 2ZSF _atom_sites.fract_transf_matrix[1][1] 0.009595 _atom_sites.fract_transf_matrix[1][2] 0.00554 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 651 651 ATP ATP . C 3 ADP A 1 652 652 ADP ADP . D 4 GOL A 1 700 700 GOL GOL . E 4 GOL A 1 701 701 GOL GOL . F 4 GOL A 1 702 702 GOL GOL . G 4 GOL A 1 703 703 GOL GOL . H 4 GOL A 1 704 704 GOL GOL . I 4 GOL A 1 705 705 GOL GOL . J 5 FLC A 1 650 650 FLC FLC . K 6 NA A 1 800 800 NA NA . L 7 ACT A 1 801 1 ACT ACT . M 7 ACT A 1 802 2 ACT ACT . N 7 ACT A 1 803 3 ACT ACT . O 8 HOH A 1 320 320 HOH HOH . O 8 HOH A 2 321 321 HOH HOH . O 8 HOH A 3 322 322 HOH HOH . O 8 HOH A 4 323 323 HOH HOH . O 8 HOH A 5 324 324 HOH HOH . O 8 HOH A 6 325 325 HOH HOH . O 8 HOH A 7 326 326 HOH HOH . O 8 HOH A 8 327 327 HOH HOH . O 8 HOH A 9 328 328 HOH HOH . O 8 HOH A 10 329 329 HOH HOH . O 8 HOH A 11 330 330 HOH HOH . O 8 HOH A 12 331 331 HOH HOH . O 8 HOH A 13 332 332 HOH HOH . O 8 HOH A 14 333 333 HOH HOH . O 8 HOH A 15 334 334 HOH HOH . O 8 HOH A 16 335 335 HOH HOH . O 8 HOH A 17 336 336 HOH HOH . O 8 HOH A 18 337 337 HOH HOH . O 8 HOH A 19 338 338 HOH HOH . O 8 HOH A 20 339 339 HOH HOH . O 8 HOH A 21 340 340 HOH HOH . O 8 HOH A 22 341 341 HOH HOH . O 8 HOH A 23 342 342 HOH HOH . O 8 HOH A 24 343 343 HOH HOH . O 8 HOH A 25 344 344 HOH HOH . O 8 HOH A 26 345 345 HOH HOH . O 8 HOH A 27 346 346 HOH HOH . O 8 HOH A 28 347 347 HOH HOH . O 8 HOH A 29 348 348 HOH HOH . O 8 HOH A 30 349 349 HOH HOH . O 8 HOH A 31 350 350 HOH HOH . O 8 HOH A 32 351 351 HOH HOH . O 8 HOH A 33 352 352 HOH HOH . O 8 HOH A 34 353 353 HOH HOH . O 8 HOH A 35 354 354 HOH HOH . O 8 HOH A 36 355 355 HOH HOH . O 8 HOH A 37 356 356 HOH HOH . O 8 HOH A 38 357 357 HOH HOH . O 8 HOH A 39 358 358 HOH HOH . O 8 HOH A 40 359 359 HOH HOH . O 8 HOH A 41 360 360 HOH HOH . O 8 HOH A 42 361 361 HOH HOH . O 8 HOH A 43 362 362 HOH HOH . O 8 HOH A 44 363 363 HOH HOH . O 8 HOH A 45 364 364 HOH HOH . O 8 HOH A 46 365 365 HOH HOH . O 8 HOH A 47 366 366 HOH HOH . O 8 HOH A 48 367 367 HOH HOH . O 8 HOH A 49 368 368 HOH HOH . O 8 HOH A 50 369 369 HOH HOH . O 8 HOH A 51 370 370 HOH HOH . O 8 HOH A 52 371 371 HOH HOH . O 8 HOH A 53 372 372 HOH HOH . O 8 HOH A 54 373 373 HOH HOH . O 8 HOH A 55 374 374 HOH HOH . O 8 HOH A 56 375 375 HOH HOH . O 8 HOH A 57 376 376 HOH HOH . O 8 HOH A 58 377 377 HOH HOH . O 8 HOH A 59 378 378 HOH HOH . O 8 HOH A 60 379 379 HOH HOH . O 8 HOH A 61 380 380 HOH HOH . O 8 HOH A 62 381 381 HOH HOH . O 8 HOH A 63 382 382 HOH HOH . O 8 HOH A 64 383 383 HOH HOH . O 8 HOH A 65 384 384 HOH HOH . O 8 HOH A 66 385 385 HOH HOH . O 8 HOH A 67 386 386 HOH HOH . O 8 HOH A 68 387 387 HOH HOH . O 8 HOH A 69 388 388 HOH HOH . O 8 HOH A 70 389 389 HOH HOH . O 8 HOH A 71 390 390 HOH HOH . O 8 HOH A 72 391 391 HOH HOH . O 8 HOH A 73 392 392 HOH HOH . O 8 HOH A 74 393 393 HOH HOH . O 8 HOH A 75 394 394 HOH HOH . O 8 HOH A 76 395 395 HOH HOH . O 8 HOH A 77 396 396 HOH HOH . O 8 HOH A 78 397 397 HOH HOH . O 8 HOH A 79 398 398 HOH HOH . O 8 HOH A 80 399 399 HOH HOH . O 8 HOH A 81 400 400 HOH HOH . O 8 HOH A 82 401 401 HOH HOH . O 8 HOH A 83 402 402 HOH HOH . O 8 HOH A 84 403 403 HOH HOH . O 8 HOH A 85 404 404 HOH HOH . O 8 HOH A 86 405 405 HOH HOH . O 8 HOH A 87 406 406 HOH HOH . O 8 HOH A 88 407 407 HOH HOH . O 8 HOH A 89 408 408 HOH HOH . O 8 HOH A 90 409 409 HOH HOH . O 8 HOH A 91 410 410 HOH HOH . O 8 HOH A 92 411 411 HOH HOH . O 8 HOH A 93 412 412 HOH HOH . O 8 HOH A 94 413 413 HOH HOH . O 8 HOH A 95 414 414 HOH HOH . O 8 HOH A 96 415 415 HOH HOH . O 8 HOH A 97 416 416 HOH HOH . O 8 HOH A 98 417 417 HOH HOH . O 8 HOH A 99 418 418 HOH HOH . O 8 HOH A 100 419 419 HOH HOH . O 8 HOH A 101 420 420 HOH HOH . O 8 HOH A 102 421 421 HOH HOH . O 8 HOH A 103 422 422 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . A . B 2 7.955 50.985 29.02 0.5 97.2 ? PG ATP 651 A 1 HETATM 2 O O1G ATP . A . B 2 8.01 52.445 28.634 0.5 97.2 ? O1G ATP 651 A 1 HETATM 3 O O2G ATP . A . B 2 8.982 50.575 30.045 0.5 97.2 ? O2G ATP 651 A 1 HETATM 4 O O3G ATP . A . B 2 6.557 50.552 29.462 0.5 97.2 ? O3G ATP 651 A 1 HETATM 5 P PB ATP . A . B 2 8.09 48.549 27.51 0.5 97.2 ? PB ATP 651 A 1 HETATM 6 O O1B ATP . A . B 2 8.224 47.84 28.808 0.5 97.2 ? O1B ATP 651 A 1 HETATM 7 O O2B ATP . A . B 2 8.973 48.06 26.42 0.5 97.2 ? O2B ATP 651 A 1 HETATM 8 O O3B ATP . A . B 2 8.266 50.119 27.696 0.5 97.2 ? O3B ATP 651 A 1 HETATM 9 P PA ATP . A . B 2 5.892 47.442 26.029 0.5 97.2 ? PA ATP 651 A 1 HETATM 10 O O1A ATP . A . B 2 5.038 46.366 26.578 0.5 97.2 ? O1A ATP 651 A 1 HETATM 11 O O2A ATP . A . B 2 6.619 47.428 24.71 0.5 97.2 ? O2A ATP 651 A 1 HETATM 12 O O3A ATP . A . B 2 6.56 48.521 27.021 0.5 97.2 ? O3A ATP 651 A 1 HETATM 13 O O5' ATP . A . B 2 4.664 48.377 25.656 0.5 97.2 ? O5' ATP 651 A 1 HETATM 14 C C5' ATP . A . B 2 3.632 48.718 26.587 0.5 97.2 ? C5' ATP 651 A 1 HETATM 15 C C4' ATP . A . B 2 4.098 49.808 27.555 0.5 97.2 ? C4' ATP 651 A 1 HETATM 16 O O4' ATP . A . B 2 4.183 51.122 26.984 0.5 97.2 ? O4' ATP 651 A 1 HETATM 17 C C3' ATP . A . B 2 3.111 50.03 28.704 0.5 97.2 ? C3' ATP 651 A 1 HETATM 18 O O3' ATP . A . B 2 3.343 49.056 29.726 0.5 97.2 ? O3' ATP 651 A 1 HETATM 19 C C2' ATP . A . B 2 3.524 51.414 29.209 0.5 97.2 ? C2' ATP 651 A 1 HETATM 20 O O2' ATP . A . B 2 4.175 51.284 30.476 0.5 97.2 ? O2' ATP 651 A 1 HETATM 21 C C1' ATP . A . B 2 4.545 51.86 28.16 0.5 97.2 ? C1' ATP 651 A 1 HETATM 22 N N9 ATP . A . B 2 4.583 53.335 28.022 0.5 97.2 ? N9 ATP 651 A 1 HETATM 23 C C8 ATP . A . B 2 5.69 54.074 28.061 0.5 97.2 ? C8 ATP 651 A 1 HETATM 24 N N7 ATP . A . B 2 5.373 55.365 27.998 0.5 97.2 ? N7 ATP 651 A 1 HETATM 25 C C5 ATP . A . B 2 4.049 55.452 27.915 0.5 97.2 ? C5 ATP 651 A 1 HETATM 26 C C6 ATP . A . B 2 3.158 56.515 27.839 0.5 97.2 ? C6 ATP 651 A 1 HETATM 27 N N6 ATP . A . B 2 3.601 57.769 27.858 0.5 97.2 ? N6 ATP 651 A 1 HETATM 28 N N1 ATP . A . B 2 1.845 56.253 27.77 0.5 97.2 ? N1 ATP 651 A 1 HETATM 29 C C2 ATP . A . B 2 1.399 55.01 27.776 0.5 97.2 ? C2 ATP 651 A 1 HETATM 30 N N3 ATP . A . B 2 2.218 53.975 27.85 0.5 97.2 ? N3 ATP 651 A 1 HETATM 31 C C4 ATP . A . B 2 3.543 54.159 27.922 0.5 97.2 ? C4 ATP 651 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #