data_2ZSF
#
_model_server_result.job_id            emWXwgLsHvY5w_gkOvkBhw 
_model_server_result.datetime_utc      '2024-10-11 13:30:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zsf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":652}' 
#
_entry.id    2ZSF 
#
_exptl.entry_id    2ZSF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ZSF 
_cell.length_a            104.219 
_cell.length_b            104.219 
_cell.length_c            90.646 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZSF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 90.646 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 124 A ASP 124 1_555 K NA NA . A NA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc2 O O HOH . A HOH 388 1_555 K NA NA . A NA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 7 n n 
PB O2B ADP sing 8 n n 
PB O3B ADP sing 9 n n 
PB O3A ADP sing 10 n n 
O2B HOB2 ADP sing 11 n n 
O3B HOB3 ADP sing 12 n n 
PA O1A ADP doub 13 n n 
PA O2A ADP sing 14 n n 
PA O3A ADP sing 15 n n 
PA O5' ADP sing 16 n n 
O2A HOA2 ADP sing 17 n n 
O5' C5' ADP sing 18 n n 
C5' C4' ADP sing 19 n n 
C5' "H5'1" ADP sing 20 n n 
C5' "H5'2" ADP sing 21 n n 
C4' O4' ADP sing 22 n n 
C4' C3' ADP sing 23 n n 
C4' H4' ADP sing 24 n n 
O4' C1' ADP sing 25 n n 
C3' O3' ADP sing 26 n n 
C3' C2' ADP sing 27 n n 
C3' H3' ADP sing 28 n n 
O3' HO3' ADP sing 29 n n 
C2' O2' ADP sing 30 n n 
C2' C1' ADP sing 31 n n 
C2' H2' ADP sing 32 n n 
O2' HO2' ADP sing 33 n n 
C1' N9 ADP sing 34 n n 
C1' H1' ADP sing 35 n n 
N9 C8 ADP sing 36 n y 
N9 C4 ADP sing 37 n y 
C8 N7 ADP doub 38 n y 
C8 H8 ADP sing 39 n n 
N7 C5 ADP sing 40 n y 
C5 C6 ADP sing 41 n y 
C5 C4 ADP doub 42 n y 
C6 N6 ADP sing 43 n n 
C6 N1 ADP doub 44 n y 
N6 HN61 ADP sing 45 n n 
N6 HN62 ADP sing 46 n n 
N1 C2 ADP sing 47 n y 
C2 N3 ADP doub 48 n y 
C2 H2 ADP sing 49 n n 
N3 C4 ADP sing 50 n y 
#
_atom_sites.entry_id                     2ZSF 
_atom_sites.fract_transf_matrix[1][1]    0.009595 
_atom_sites.fract_transf_matrix[1][2]    0.00554 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 651 651 ATP ATP . 
C 3 ADP A 1 652 652 ADP ADP . 
D 4 GOL A 1 700 700 GOL GOL . 
E 4 GOL A 1 701 701 GOL GOL . 
F 4 GOL A 1 702 702 GOL GOL . 
G 4 GOL A 1 703 703 GOL GOL . 
H 4 GOL A 1 704 704 GOL GOL . 
I 4 GOL A 1 705 705 GOL GOL . 
J 5 FLC A 1 650 650 FLC FLC . 
K 6 NA A 1 800 800 NA NA . 
L 7 ACT A 1 801 1 ACT ACT . 
M 7 ACT A 1 802 2 ACT ACT . 
N 7 ACT A 1 803 3 ACT ACT . 
O 8 HOH A 1 320 320 HOH HOH . 
O 8 HOH A 2 321 321 HOH HOH . 
O 8 HOH A 3 322 322 HOH HOH . 
O 8 HOH A 4 323 323 HOH HOH . 
O 8 HOH A 5 324 324 HOH HOH . 
O 8 HOH A 6 325 325 HOH HOH . 
O 8 HOH A 7 326 326 HOH HOH . 
O 8 HOH A 8 327 327 HOH HOH . 
O 8 HOH A 9 328 328 HOH HOH . 
O 8 HOH A 10 329 329 HOH HOH . 
O 8 HOH A 11 330 330 HOH HOH . 
O 8 HOH A 12 331 331 HOH HOH . 
O 8 HOH A 13 332 332 HOH HOH . 
O 8 HOH A 14 333 333 HOH HOH . 
O 8 HOH A 15 334 334 HOH HOH . 
O 8 HOH A 16 335 335 HOH HOH . 
O 8 HOH A 17 336 336 HOH HOH . 
O 8 HOH A 18 337 337 HOH HOH . 
O 8 HOH A 19 338 338 HOH HOH . 
O 8 HOH A 20 339 339 HOH HOH . 
O 8 HOH A 21 340 340 HOH HOH . 
O 8 HOH A 22 341 341 HOH HOH . 
O 8 HOH A 23 342 342 HOH HOH . 
O 8 HOH A 24 343 343 HOH HOH . 
O 8 HOH A 25 344 344 HOH HOH . 
O 8 HOH A 26 345 345 HOH HOH . 
O 8 HOH A 27 346 346 HOH HOH . 
O 8 HOH A 28 347 347 HOH HOH . 
O 8 HOH A 29 348 348 HOH HOH . 
O 8 HOH A 30 349 349 HOH HOH . 
O 8 HOH A 31 350 350 HOH HOH . 
O 8 HOH A 32 351 351 HOH HOH . 
O 8 HOH A 33 352 352 HOH HOH . 
O 8 HOH A 34 353 353 HOH HOH . 
O 8 HOH A 35 354 354 HOH HOH . 
O 8 HOH A 36 355 355 HOH HOH . 
O 8 HOH A 37 356 356 HOH HOH . 
O 8 HOH A 38 357 357 HOH HOH . 
O 8 HOH A 39 358 358 HOH HOH . 
O 8 HOH A 40 359 359 HOH HOH . 
O 8 HOH A 41 360 360 HOH HOH . 
O 8 HOH A 42 361 361 HOH HOH . 
O 8 HOH A 43 362 362 HOH HOH . 
O 8 HOH A 44 363 363 HOH HOH . 
O 8 HOH A 45 364 364 HOH HOH . 
O 8 HOH A 46 365 365 HOH HOH . 
O 8 HOH A 47 366 366 HOH HOH . 
O 8 HOH A 48 367 367 HOH HOH . 
O 8 HOH A 49 368 368 HOH HOH . 
O 8 HOH A 50 369 369 HOH HOH . 
O 8 HOH A 51 370 370 HOH HOH . 
O 8 HOH A 52 371 371 HOH HOH . 
O 8 HOH A 53 372 372 HOH HOH . 
O 8 HOH A 54 373 373 HOH HOH . 
O 8 HOH A 55 374 374 HOH HOH . 
O 8 HOH A 56 375 375 HOH HOH . 
O 8 HOH A 57 376 376 HOH HOH . 
O 8 HOH A 58 377 377 HOH HOH . 
O 8 HOH A 59 378 378 HOH HOH . 
O 8 HOH A 60 379 379 HOH HOH . 
O 8 HOH A 61 380 380 HOH HOH . 
O 8 HOH A 62 381 381 HOH HOH . 
O 8 HOH A 63 382 382 HOH HOH . 
O 8 HOH A 64 383 383 HOH HOH . 
O 8 HOH A 65 384 384 HOH HOH . 
O 8 HOH A 66 385 385 HOH HOH . 
O 8 HOH A 67 386 386 HOH HOH . 
O 8 HOH A 68 387 387 HOH HOH . 
O 8 HOH A 69 388 388 HOH HOH . 
O 8 HOH A 70 389 389 HOH HOH . 
O 8 HOH A 71 390 390 HOH HOH . 
O 8 HOH A 72 391 391 HOH HOH . 
O 8 HOH A 73 392 392 HOH HOH . 
O 8 HOH A 74 393 393 HOH HOH . 
O 8 HOH A 75 394 394 HOH HOH . 
O 8 HOH A 76 395 395 HOH HOH . 
O 8 HOH A 77 396 396 HOH HOH . 
O 8 HOH A 78 397 397 HOH HOH . 
O 8 HOH A 79 398 398 HOH HOH . 
O 8 HOH A 80 399 399 HOH HOH . 
O 8 HOH A 81 400 400 HOH HOH . 
O 8 HOH A 82 401 401 HOH HOH . 
O 8 HOH A 83 402 402 HOH HOH . 
O 8 HOH A 84 403 403 HOH HOH . 
O 8 HOH A 85 404 404 HOH HOH . 
O 8 HOH A 86 405 405 HOH HOH . 
O 8 HOH A 87 406 406 HOH HOH . 
O 8 HOH A 88 407 407 HOH HOH . 
O 8 HOH A 89 408 408 HOH HOH . 
O 8 HOH A 90 409 409 HOH HOH . 
O 8 HOH A 91 410 410 HOH HOH . 
O 8 HOH A 92 411 411 HOH HOH . 
O 8 HOH A 93 412 412 HOH HOH . 
O 8 HOH A 94 413 413 HOH HOH . 
O 8 HOH A 95 414 414 HOH HOH . 
O 8 HOH A 96 415 415 HOH HOH . 
O 8 HOH A 97 416 416 HOH HOH . 
O 8 HOH A 98 417 417 HOH HOH . 
O 8 HOH A 99 418 418 HOH HOH . 
O 8 HOH A 100 419 419 HOH HOH . 
O 8 HOH A 101 420 420 HOH HOH . 
O 8 HOH A 102 421 421 HOH HOH . 
O 8 HOH A 103 422 422 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . B . C 3 8.322 48.01 27.769 0.5 97.2 ? PB ADP 652 A 1 
HETATM 2 O O1B ADP . B . C 3 9.107 47.228 26.78 0.5 97.2 ? O1B ADP 652 A 1 
HETATM 3 O O2B ADP . B . C 3 8.584 47.691 29.195 0.5 97.2 ? O2B ADP 652 A 1 
HETATM 4 O O3B ADP . B . C 3 6.764 47.903 27.469 0.5 97.2 ? O3B ADP 652 A 1 
HETATM 5 P PA ADP . B . C 3 8.73 50.746 28.613 0.5 97.2 ? PA ADP 652 A 1 
HETATM 6 O O1A ADP . B . C 3 9.442 50.19 29.787 0.5 97.2 ? O1A ADP 652 A 1 
HETATM 7 O O2A ADP . B . C 3 9.324 51.899 27.849 0.5 97.2 ? O2A ADP 652 A 1 
HETATM 8 O O3A ADP . B . C 3 8.517 49.585 27.514 0.5 97.2 ? O3A ADP 652 A 1 
HETATM 9 O O5' ADP . B . C 3 7.256 51.072 29.106 0.5 97.2 ? O5' ADP 652 A 1 
HETATM 10 C C5' ADP . B . C 3 6.119 50.486 28.469 0.5 97.2 ? C5' ADP 652 A 1 
HETATM 11 C C4' ADP . B . C 3 4.944 50.317 29.436 0.5 97.2 ? C4' ADP 652 A 1 
HETATM 12 O O4' ADP . B . C 3 4.287 51.588 29.587 0.5 97.2 ? O4' ADP 652 A 1 
HETATM 13 C C3' ADP . B . C 3 3.922 49.432 28.72 0.5 97.2 ? C3' ADP 652 A 1 
HETATM 14 O O3' ADP . B . C 3 2.915 49.022 29.649 0.5 97.2 ? O3' ADP 652 A 1 
HETATM 15 C C2' ADP . B . C 3 3.349 50.462 27.75 0.5 97.2 ? C2' ADP 652 A 1 
HETATM 16 O O2' ADP . B . C 3 2.111 49.976 27.224 0.5 97.2 ? O2' ADP 652 A 1 
HETATM 17 C C1' ADP . B . C 3 3.09 51.554 28.788 0.5 97.2 ? C1' ADP 652 A 1 
HETATM 18 N N9 ADP . B . C 3 2.817 52.883 28.201 0.5 97.2 ? N9 ADP 652 A 1 
HETATM 19 C C8 ADP . B . C 3 1.641 53.317 27.744 0.5 97.2 ? C8 ADP 652 A 1 
HETATM 20 N N7 ADP . B . C 3 1.746 54.598 27.399 0.5 97.2 ? N7 ADP 652 A 1 
HETATM 21 C C5 ADP . B . C 3 2.995 54.986 27.632 0.5 97.2 ? C5 ADP 652 A 1 
HETATM 22 C C6 ADP . B . C 3 3.682 56.188 27.495 0.5 97.2 ? C6 ADP 652 A 1 
HETATM 23 N N6 ADP . B . C 3 3.057 57.283 27.072 0.5 97.2 ? N6 ADP 652 A 1 
HETATM 24 N N1 ADP . B . C 3 4.976 56.236 27.841 0.5 97.2 ? N1 ADP 652 A 1 
HETATM 25 C C2 ADP . B . C 3 5.6 55.17 28.308 0.5 97.2 ? C2 ADP 652 A 1 
HETATM 26 N N3 ADP . B . C 3 4.977 54.013 28.459 0.5 97.2 ? N3 ADP 652 A 1 
HETATM 27 C C4 ADP . B . C 3 3.682 53.89 28.134 0.5 97.2 ? C4 ADP 652 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#