data_2ZSS # _model_server_result.job_id TWmDtgUqmxfyF2TfN4cVsA _model_server_result.datetime_utc '2024-11-02 11:34:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2ZSS # _exptl.entry_id 2ZSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.79 _cell.angle_gamma 90 _cell.entry_id 2ZSS _cell.length_a 34.371 _cell.length_b 30.614 _cell.length_c 63.809 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 E C CMO . A CMO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 2ZSS _atom_sites.fract_transf_matrix[1][1] 0.029094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 2 SO4 A 1 157 157 SO4 SO4 . D 3 HEM A 1 154 154 HEM HEM . E 4 CMO A 1 155 155 CMO CMO . F 5 HOH A 1 158 158 HOH HOH . F 5 HOH A 2 159 159 HOH HOH . F 5 HOH A 3 160 160 HOH HOH . F 5 HOH A 4 161 161 HOH HOH . F 5 HOH A 5 162 162 HOH HOH . F 5 HOH A 6 163 163 HOH HOH . F 5 HOH A 7 164 164 HOH HOH . F 5 HOH A 8 165 165 HOH HOH . F 5 HOH A 9 166 166 HOH HOH . F 5 HOH A 10 167 167 HOH HOH . F 5 HOH A 11 168 168 HOH HOH . F 5 HOH A 12 169 169 HOH HOH . F 5 HOH A 13 170 170 HOH HOH . F 5 HOH A 14 171 171 HOH HOH . F 5 HOH A 15 172 172 HOH HOH . F 5 HOH A 16 173 173 HOH HOH . F 5 HOH A 17 174 174 HOH HOH . F 5 HOH A 18 175 175 HOH HOH . F 5 HOH A 19 176 176 HOH HOH . F 5 HOH A 20 177 177 HOH HOH . F 5 HOH A 21 178 178 HOH HOH . F 5 HOH A 22 179 179 HOH HOH . F 5 HOH A 23 180 180 HOH HOH . F 5 HOH A 24 181 181 HOH HOH . F 5 HOH A 25 182 182 HOH HOH . F 5 HOH A 26 183 183 HOH HOH . F 5 HOH A 27 184 184 HOH HOH . F 5 HOH A 28 185 185 HOH HOH . F 5 HOH A 29 186 186 HOH HOH . F 5 HOH A 30 187 187 HOH HOH . F 5 HOH A 31 188 188 HOH HOH . F 5 HOH A 32 189 189 HOH HOH . F 5 HOH A 33 190 190 HOH HOH . F 5 HOH A 34 191 191 HOH HOH . F 5 HOH A 35 192 192 HOH HOH . F 5 HOH A 36 193 193 HOH HOH . F 5 HOH A 37 194 194 HOH HOH . F 5 HOH A 38 195 195 HOH HOH . F 5 HOH A 39 196 196 HOH HOH . F 5 HOH A 40 197 197 HOH HOH . F 5 HOH A 41 198 198 HOH HOH . F 5 HOH A 42 199 199 HOH HOH . F 5 HOH A 43 200 200 HOH HOH . F 5 HOH A 44 201 201 HOH HOH . F 5 HOH A 45 202 202 HOH HOH . F 5 HOH A 46 203 203 HOH HOH . F 5 HOH A 47 204 204 HOH HOH . F 5 HOH A 48 205 205 HOH HOH . F 5 HOH A 49 206 206 HOH HOH . F 5 HOH A 50 207 207 HOH HOH . F 5 HOH A 51 208 208 HOH HOH . F 5 HOH A 52 209 209 HOH HOH . F 5 HOH A 53 210 210 HOH HOH . F 5 HOH A 54 211 211 HOH HOH . F 5 HOH A 55 212 212 HOH HOH . F 5 HOH A 56 213 213 HOH HOH . F 5 HOH A 57 214 214 HOH HOH . F 5 HOH A 58 215 215 HOH HOH . F 5 HOH A 59 216 216 HOH HOH . F 5 HOH A 60 217 217 HOH HOH . F 5 HOH A 61 218 218 HOH HOH . F 5 HOH A 62 219 219 HOH HOH . F 5 HOH A 63 220 220 HOH HOH . F 5 HOH A 64 221 221 HOH HOH . F 5 HOH A 65 222 222 HOH HOH . F 5 HOH A 66 223 223 HOH HOH . F 5 HOH A 67 224 224 HOH HOH . F 5 HOH A 68 225 225 HOH HOH . F 5 HOH A 69 226 226 HOH HOH . F 5 HOH A 70 227 227 HOH HOH . F 5 HOH A 71 228 228 HOH HOH . F 5 HOH A 72 229 229 HOH HOH . F 5 HOH A 73 230 230 HOH HOH . F 5 HOH A 74 231 231 HOH HOH . F 5 HOH A 75 232 232 HOH HOH . F 5 HOH A 76 233 233 HOH HOH . F 5 HOH A 77 234 234 HOH HOH . F 5 HOH A 78 235 235 HOH HOH . F 5 HOH A 79 236 236 HOH HOH . F 5 HOH A 80 237 237 HOH HOH . F 5 HOH A 81 238 238 HOH HOH . F 5 HOH A 82 239 239 HOH HOH . F 5 HOH A 83 240 240 HOH HOH . F 5 HOH A 84 241 241 HOH HOH . F 5 HOH A 85 242 242 HOH HOH . F 5 HOH A 86 243 243 HOH HOH . F 5 HOH A 87 244 244 HOH HOH . F 5 HOH A 88 245 245 HOH HOH . F 5 HOH A 89 246 246 HOH HOH . F 5 HOH A 90 247 247 HOH HOH . F 5 HOH A 91 248 248 HOH HOH . F 5 HOH A 92 249 249 HOH HOH . F 5 HOH A 93 250 250 HOH HOH . F 5 HOH A 94 251 251 HOH HOH . F 5 HOH A 95 252 252 HOH HOH . F 5 HOH A 96 253 253 HOH HOH . F 5 HOH A 97 254 254 HOH HOH . F 5 HOH A 98 255 255 HOH HOH . F 5 HOH A 99 256 256 HOH HOH . F 5 HOH A 100 257 257 HOH HOH . F 5 HOH A 101 258 258 HOH HOH . F 5 HOH A 102 259 259 HOH HOH . F 5 HOH A 103 260 260 HOH HOH . F 5 HOH A 104 261 261 HOH HOH . F 5 HOH A 105 262 262 HOH HOH . F 5 HOH A 106 263 263 HOH HOH . F 5 HOH A 107 264 264 HOH HOH . F 5 HOH A 108 265 265 HOH HOH . F 5 HOH A 109 266 266 HOH HOH . F 5 HOH A 110 267 267 HOH HOH . F 5 HOH A 111 268 268 HOH HOH . F 5 HOH A 112 269 269 HOH HOH . F 5 HOH A 113 270 270 HOH HOH . F 5 HOH A 114 271 271 HOH HOH . F 5 HOH A 115 272 272 HOH HOH . F 5 HOH A 116 273 273 HOH HOH . F 5 HOH A 117 274 274 HOH HOH . F 5 HOH A 118 275 275 HOH HOH . F 5 HOH A 119 276 276 HOH HOH . F 5 HOH A 120 277 277 HOH HOH . F 5 HOH A 121 278 278 HOH HOH . F 5 HOH A 122 279 279 HOH HOH . F 5 HOH A 123 280 280 HOH HOH . F 5 HOH A 124 281 281 HOH HOH . F 5 HOH A 125 282 282 HOH HOH . F 5 HOH A 126 283 283 HOH HOH . F 5 HOH A 127 284 284 HOH HOH . F 5 HOH A 128 285 285 HOH HOH . F 5 HOH A 129 286 286 HOH HOH . F 5 HOH A 130 287 287 HOH HOH . F 5 HOH A 131 288 288 HOH HOH . F 5 HOH A 132 289 289 HOH HOH . F 5 HOH A 133 290 290 HOH HOH . F 5 HOH A 134 291 291 HOH HOH . F 5 HOH A 135 292 292 HOH HOH . F 5 HOH A 136 293 293 HOH HOH . F 5 HOH A 137 294 294 HOH HOH . F 5 HOH A 138 295 295 HOH HOH . F 5 HOH A 139 296 296 HOH HOH . F 5 HOH A 140 297 297 HOH HOH . F 5 HOH A 141 298 298 HOH HOH . F 5 HOH A 142 299 299 HOH HOH . F 5 HOH A 143 300 300 HOH HOH . F 5 HOH A 144 301 301 HOH HOH . F 5 HOH A 145 302 302 HOH HOH . F 5 HOH A 146 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 0.553 -9.967 16.743 1 10.91 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 3 4.059 -6.796 15.526 1 8.35 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 3 0.708 -3.62 14.06 1 8.27 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 3 -2.782 -6.734 15.294 1 8.59 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 3 1.827 -9.416 16.524 1 11.38 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 3 3.114 -10.048 16.817 1 11.54 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 3 4.063 -9.187 16.458 1 12.11 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 3 3.44 -7.942 15.983 1 9.41 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 3 5.587 -9.248 16.577 1 15.24 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 3 3.223 -11.453 17.322 1 13.03 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 3 3.846 -12.282 16.162 1 14.69 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 3 2.884 -12.365 14.92 1 17.13 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 3 3.301 -12.044 13.788 1 18.7 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 3 1.677 -12.754 15.087 1 17.05 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 3 3.49 -5.636 15.009 1 10.35 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 3 4.171 -4.489 14.514 1 8.64 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 3 3.269 -3.627 14.142 1 8.16 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 3 1.917 -4.256 14.354 1 8 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 3 5.722 -4.41 14.482 1 11.49 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 3 3.357 -2.234 13.592 1 10.76 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 3 4.316 -1.442 14.012 1 14.11 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 3 -0.569 -4.215 14.316 1 7.9 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 3 -1.812 -3.504 14.145 1 10.75 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 3 -2.764 -4.391 14.54 1 10.87 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 3 -2.161 -5.624 14.885 1 10.25 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 3 -1.892 -2.065 13.682 1 12.75 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 3 -4.247 -4.245 14.719 1 11.77 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 3 -4.868 -3.187 14.386 1 14.99 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 3 -2.225 -7.873 15.777 1 10.71 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 3 -2.944 -9.048 16.309 1 13.18 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 3 -1.933 -9.944 16.774 1 12.33 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 3 -0.625 -9.377 16.433 1 9.8 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 3 -4.428 -9.118 16.341 1 14.55 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 3 -2.187 -11.227 17.485 1 15.19 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 3 -2.303 -10.806 18.99 1 18.56 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 3 -2.659 -11.975 19.834 1 22.91 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 3 -3.911 -12.303 19.787 1 24.33 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 3 -1.71 -12.546 20.539 1 21.36 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 3 2.028 -8.137 16.03 1 9.53 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 3 2.121 -5.473 14.871 1 8.96 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 3 -0.762 -5.515 14.714 1 7.07 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 3 -0.874 -8.089 15.887 1 9.19 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 3 0.64 -6.828 15.332 1 10.46 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #