data_2ZT6 # _model_server_result.job_id t5c2N11gqpsrAK8D4sodTw _model_server_result.datetime_utc '2024-11-04 20:14:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":699}' # _entry.id 2ZT6 # _exptl.entry_id 2ZT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZT6 _cell.length_a 116.608 _cell.length_b 138.862 _cell.length_c 133.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 133.819 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id APC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G APC doub 13 n n PG O2G APC sing 14 n n PG O3G APC sing 15 n n PG O3B APC sing 16 n n O2G HOG2 APC sing 17 n n O3G HOG3 APC sing 18 n n PB O1B APC doub 19 n n PB O2B APC sing 20 n n PB O3B APC sing 21 n n PB C3A APC sing 22 n n O2B HOB2 APC sing 23 n n PA O1A APC doub 24 n n PA O2A APC sing 25 n n PA C3A APC sing 26 n n PA O5' APC sing 27 n n O2A HOA2 APC sing 28 n n C3A H3A1 APC sing 29 n n C3A H3A2 APC sing 30 n n O5' C5' APC sing 31 n n C5' C4' APC sing 32 n n C5' "H5'1" APC sing 33 n n C5' "H5'2" APC sing 34 n n C4' O4' APC sing 35 n n C4' C3' APC sing 36 n n C4' H4' APC sing 37 n n O4' C1' APC sing 38 n n C3' O3' APC sing 39 n n C3' C2' APC sing 40 n n C3' H3' APC sing 41 n n O3' HO3' APC sing 42 n n C2' O2' APC sing 43 n n C2' C1' APC sing 44 n n C2' H2' APC sing 45 n n O2' HO2' APC sing 46 n n C1' N9 APC sing 47 n n C1' H1' APC sing 48 n n N9 C8 APC sing 49 n y N9 C4 APC sing 50 n y C8 N7 APC doub 51 n y C8 H8 APC sing 52 n n N7 C5 APC sing 53 n y C5 C6 APC sing 54 n y C5 C4 APC doub 55 n y C6 N6 APC sing 56 n n C6 N1 APC doub 57 n y N6 HN61 APC sing 58 n n N6 HN62 APC sing 59 n n N1 C2 APC sing 60 n y C2 N3 APC doub 61 n y C2 H2 APC sing 62 n n N3 C4 APC sing 63 n y # _atom_sites.entry_id 2ZT6 _atom_sites.fract_transf_matrix[1][1] 0.008576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APC A 1 699 699 APC DRG . C 3 HOH A 1 700 700 HOH WAT . C 3 HOH A 2 701 701 HOH WAT . C 3 HOH A 3 702 702 HOH WAT . C 3 HOH A 4 703 703 HOH WAT . C 3 HOH A 5 704 704 HOH WAT . C 3 HOH A 6 705 705 HOH WAT . C 3 HOH A 7 706 706 HOH WAT . C 3 HOH A 8 707 707 HOH WAT . C 3 HOH A 9 708 708 HOH WAT . C 3 HOH A 10 709 709 HOH WAT . C 3 HOH A 11 710 710 HOH WAT . C 3 HOH A 12 711 711 HOH WAT . C 3 HOH A 13 712 712 HOH WAT . C 3 HOH A 14 713 713 HOH WAT . C 3 HOH A 15 714 714 HOH WAT . C 3 HOH A 16 715 715 HOH WAT . C 3 HOH A 17 716 716 HOH WAT . C 3 HOH A 18 717 717 HOH WAT . C 3 HOH A 19 718 718 HOH WAT . C 3 HOH A 20 719 719 HOH WAT . C 3 HOH A 21 720 720 HOH WAT . C 3 HOH A 22 721 721 HOH WAT . C 3 HOH A 23 722 722 HOH WAT . C 3 HOH A 24 723 723 HOH WAT . C 3 HOH A 25 724 724 HOH WAT . C 3 HOH A 26 725 725 HOH WAT . C 3 HOH A 27 726 726 HOH WAT . C 3 HOH A 28 727 727 HOH WAT . C 3 HOH A 29 728 728 HOH WAT . C 3 HOH A 30 729 729 HOH WAT . C 3 HOH A 31 730 730 HOH WAT . C 3 HOH A 32 731 731 HOH WAT . C 3 HOH A 33 732 732 HOH WAT . C 3 HOH A 34 733 733 HOH WAT . C 3 HOH A 35 734 734 HOH WAT . C 3 HOH A 36 735 735 HOH WAT . C 3 HOH A 37 736 736 HOH WAT . C 3 HOH A 38 737 737 HOH WAT . C 3 HOH A 39 738 738 HOH WAT . C 3 HOH A 40 739 739 HOH WAT . C 3 HOH A 41 740 740 HOH WAT . C 3 HOH A 42 741 741 HOH WAT . C 3 HOH A 43 742 742 HOH WAT . C 3 HOH A 44 743 743 HOH WAT . C 3 HOH A 45 744 744 HOH WAT . C 3 HOH A 46 745 745 HOH WAT . C 3 HOH A 47 746 746 HOH WAT . C 3 HOH A 48 747 747 HOH WAT . C 3 HOH A 49 748 748 HOH WAT . C 3 HOH A 50 749 749 HOH WAT . C 3 HOH A 51 750 750 HOH WAT . C 3 HOH A 52 751 751 HOH WAT . C 3 HOH A 53 752 752 HOH WAT . C 3 HOH A 54 753 753 HOH WAT . C 3 HOH A 55 754 754 HOH WAT . C 3 HOH A 56 755 755 HOH WAT . C 3 HOH A 57 756 756 HOH WAT . C 3 HOH A 58 757 757 HOH WAT . C 3 HOH A 59 758 758 HOH WAT . C 3 HOH A 60 759 759 HOH WAT . C 3 HOH A 61 760 760 HOH WAT . C 3 HOH A 62 761 761 HOH WAT . C 3 HOH A 63 762 762 HOH WAT . C 3 HOH A 64 763 763 HOH WAT . C 3 HOH A 65 764 764 HOH WAT . C 3 HOH A 66 765 765 HOH WAT . C 3 HOH A 67 766 766 HOH WAT . C 3 HOH A 68 767 767 HOH WAT . C 3 HOH A 69 768 768 HOH WAT . C 3 HOH A 70 769 769 HOH WAT . C 3 HOH A 71 770 770 HOH WAT . C 3 HOH A 72 771 771 HOH WAT . C 3 HOH A 73 773 773 HOH WAT . C 3 HOH A 74 780 780 HOH WAT . C 3 HOH A 75 781 781 HOH WAT . C 3 HOH A 76 782 782 HOH WAT . C 3 HOH A 77 783 783 HOH WAT . C 3 HOH A 78 784 784 HOH WAT . C 3 HOH A 79 785 785 HOH WAT . C 3 HOH A 80 786 786 HOH WAT . C 3 HOH A 81 787 787 HOH WAT . C 3 HOH A 82 788 788 HOH WAT . C 3 HOH A 83 789 789 HOH WAT . C 3 HOH A 84 790 790 HOH WAT . C 3 HOH A 85 791 791 HOH WAT . C 3 HOH A 86 792 792 HOH WAT . C 3 HOH A 87 793 793 HOH WAT . C 3 HOH A 88 794 794 HOH WAT . C 3 HOH A 89 795 795 HOH WAT . C 3 HOH A 90 797 797 HOH WAT . C 3 HOH A 91 798 798 HOH WAT . C 3 HOH A 92 799 799 HOH WAT . C 3 HOH A 93 800 800 HOH WAT . C 3 HOH A 94 801 801 HOH WAT . C 3 HOH A 95 802 802 HOH WAT . C 3 HOH A 96 803 803 HOH WAT . C 3 HOH A 97 806 806 HOH WAT . C 3 HOH A 98 807 807 HOH WAT . C 3 HOH A 99 808 808 HOH WAT . C 3 HOH A 100 809 809 HOH WAT . C 3 HOH A 101 810 810 HOH WAT . C 3 HOH A 102 811 811 HOH WAT . C 3 HOH A 103 813 813 HOH WAT . C 3 HOH A 104 814 814 HOH WAT . C 3 HOH A 105 816 816 HOH WAT . C 3 HOH A 106 817 817 HOH WAT . C 3 HOH A 107 819 819 HOH WAT . C 3 HOH A 108 820 820 HOH WAT . C 3 HOH A 109 821 821 HOH WAT . C 3 HOH A 110 822 822 HOH WAT . C 3 HOH A 111 823 823 HOH WAT . C 3 HOH A 112 824 824 HOH WAT . C 3 HOH A 113 825 825 HOH WAT . C 3 HOH A 114 826 826 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG APC . . . B 2 31.629 -18.47 74.703 1 86.29 ? PG APC 699 A 1 HETATM 2 O O1G APC . . . B 2 30.141 -18.895 75.149 1 85.86 ? O1G APC 699 A 1 HETATM 3 O O2G APC . . . B 2 31.796 -18.491 73.233 1 84.93 ? O2G APC 699 A 1 HETATM 4 O O3G APC . . . B 2 32.625 -19.497 75.441 1 84.71 ? O3G APC 699 A 1 HETATM 5 P PB APC . . . B 2 31.232 -16.641 76.766 1 82.02 ? PB APC 699 A 1 HETATM 6 O O1B APC . . . B 2 32.153 -15.465 77.367 1 83.57 ? O1B APC 699 A 1 HETATM 7 O O2B APC . . . B 2 31.154 -17.806 77.675 1 81.22 ? O2B APC 699 A 1 HETATM 8 O O3B APC . . . B 2 31.9 -17.023 75.352 1 83.44 ? O3B APC 699 A 1 HETATM 9 P PA APC . . . B 2 29.209 -14.691 77.685 1 79.49 ? PA APC 699 A 1 HETATM 10 O O1A APC . . . B 2 29.758 -15.317 79.064 1 81.96 ? O1A APC 699 A 1 HETATM 11 O O2A APC . . . B 2 29.767 -13.349 77.408 1 77.02 ? O2A APC 699 A 1 HETATM 12 C C3A APC . . . B 2 29.622 -15.899 76.403 1 81.02 ? C3A APC 699 A 1 HETATM 13 O O5' APC . . . B 2 27.605 -14.669 77.826 1 80.89 ? O5' APC 699 A 1 HETATM 14 C C5' APC . . . B 2 26.87 -13.623 77.184 1 80.35 ? C5' APC 699 A 1 HETATM 15 C C4' APC . . . B 2 26.745 -13.896 75.685 1 79.11 ? C4' APC 699 A 1 HETATM 16 O O4' APC . . . B 2 26.599 -12.717 74.882 1 76.33 ? O4' APC 699 A 1 HETATM 17 C C3' APC . . . B 2 25.495 -14.67 75.272 1 78.3 ? C3' APC 699 A 1 HETATM 18 O O3' APC . . . B 2 25.571 -16.02 75.736 1 83.54 ? O3' APC 699 A 1 HETATM 19 C C2' APC . . . B 2 25.66 -14.59 73.756 1 78.26 ? C2' APC 699 A 1 HETATM 20 O O2' APC . . . B 2 24.372 -14.571 73.137 1 80.29 ? O2' APC 699 A 1 HETATM 21 C C1' APC . . . B 2 26.347 -13.234 73.563 1 78.87 ? C1' APC 699 A 1 HETATM 22 N N9 APC . . . B 2 27.633 -13.449 72.862 1 79.41 ? N9 APC 699 A 1 HETATM 23 C C8 APC . . . B 2 28.843 -13.428 73.416 1 80.19 ? C8 APC 699 A 1 HETATM 24 N N7 APC . . . B 2 29.769 -13.628 72.481 1 80.16 ? N7 APC 699 A 1 HETATM 25 C C5 APC . . . B 2 29.144 -13.781 71.317 1 78.64 ? C5 APC 699 A 1 HETATM 26 C C6 APC . . . B 2 29.569 -14.001 70.014 1 76.64 ? C6 APC 699 A 1 HETATM 27 N N6 APC . . . B 2 30.865 -14.094 69.731 1 75.76 ? N6 APC 699 A 1 HETATM 28 N N1 APC . . . B 2 28.651 -14.103 69.042 1 77.12 ? N1 APC 699 A 1 HETATM 29 C C2 APC . . . B 2 27.361 -13.996 69.31 1 78.87 ? C2 APC 699 A 1 HETATM 30 N N3 APC . . . B 2 26.922 -13.783 70.538 1 78.1 ? N3 APC 699 A 1 HETATM 31 C C4 APC . . . B 2 27.782 -13.67 71.559 1 79.1 ? C4 APC 699 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #