data_2ZT9 # _model_server_result.job_id MthMco3uY2gutD1KhgmMBg _model_server_result.datetime_utc '2024-11-22 05:44:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":101}' # _entry.id 2ZT9 # _exptl.entry_id 2ZT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.873 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-CAROTENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZT9 _cell.length_a 159.225 _cell.length_b 159.225 _cell.length_c 365.886 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id BCR _chem_comp.mon_nstd_flag . _chem_comp.name BETA-CAROTENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BCR sing 70 n n C1 C6 BCR sing 71 n n C1 C31 BCR sing 72 n n C1 C32 BCR sing 73 n n C2 C3 BCR sing 74 n n C2 HC21 BCR sing 75 n n C2 HC22 BCR sing 76 n n C3 C4 BCR sing 77 n n C3 HC31 BCR sing 78 n n C3 HC32 BCR sing 79 n n C4 C5 BCR sing 80 n n C4 HC41 BCR sing 81 n n C4 HC42 BCR sing 82 n n C5 C6 BCR doub 83 n n C5 C33 BCR sing 84 n n C6 C7 BCR sing 85 n n C7 C8 BCR doub 86 e n C7 HC7 BCR sing 87 n n C8 C9 BCR sing 88 n n C8 HC8 BCR sing 89 n n C9 C10 BCR doub 90 e n C9 C34 BCR sing 91 n n C10 C11 BCR sing 92 n n C10 H10C BCR sing 93 n n C11 C12 BCR doub 94 e n C11 H11C BCR sing 95 n n C33 H331 BCR sing 96 n n C33 H332 BCR sing 97 n n C33 H333 BCR sing 98 n n C31 H311 BCR sing 99 n n C31 H312 BCR sing 100 n n C31 H313 BCR sing 101 n n C32 H321 BCR sing 102 n n C32 H322 BCR sing 103 n n C32 H323 BCR sing 104 n n C34 H341 BCR sing 105 n n C34 H342 BCR sing 106 n n C34 H343 BCR sing 107 n n C12 C13 BCR sing 108 n n C12 H12C BCR sing 109 n n C13 C14 BCR doub 110 e n C13 C35 BCR sing 111 n n C14 C15 BCR sing 112 n n C14 H14C BCR sing 113 n n C15 C16 BCR doub 114 e n C15 H15C BCR sing 115 n n C16 C17 BCR sing 116 n n C16 H16C BCR sing 117 n n C17 C18 BCR doub 118 e n C17 H17C BCR sing 119 n n C18 C19 BCR sing 120 n n C18 C36 BCR sing 121 n n C19 C20 BCR doub 122 e n C19 H19C BCR sing 123 n n C20 C21 BCR sing 124 n n C20 H20C BCR sing 125 n n C21 C22 BCR doub 126 e n C21 H21C BCR sing 127 n n C22 C23 BCR sing 128 n n C22 C37 BCR sing 129 n n C23 C24 BCR doub 130 e n C23 H23C BCR sing 131 n n C24 C25 BCR sing 132 n n C24 H24C BCR sing 133 n n C25 C26 BCR doub 134 n n C25 C30 BCR sing 135 n n C26 C27 BCR sing 136 n n C26 C38 BCR sing 137 n n C27 C28 BCR sing 138 n n C27 H271 BCR sing 139 n n C27 H272 BCR sing 140 n n C28 C29 BCR sing 141 n n C28 H281 BCR sing 142 n n C28 H282 BCR sing 143 n n C29 C30 BCR sing 144 n n C29 H291 BCR sing 145 n n C29 H292 BCR sing 146 n n C30 C39 BCR sing 147 n n C30 C40 BCR sing 148 n n C35 H351 BCR sing 149 n n C35 H352 BCR sing 150 n n C35 H353 BCR sing 151 n n C36 H361 BCR sing 152 n n C36 H362 BCR sing 153 n n C36 H363 BCR sing 154 n n C37 H371 BCR sing 155 n n C37 H372 BCR sing 156 n n C37 H373 BCR sing 157 n n C38 H381 BCR sing 158 n n C38 H382 BCR sing 159 n n C38 H383 BCR sing 160 n n C39 H391 BCR sing 161 n n C39 H392 BCR sing 162 n n C39 H393 BCR sing 163 n n C40 H401 BCR sing 164 n n C40 H402 BCR sing 165 n n C40 H403 BCR sing 166 n n # _atom_sites.entry_id 2ZT9 _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 UMQ A 1 304 101 UMQ UMQ . M 10 UMQ A 1 305 103 UMQ UMQ . N 10 UMQ A 1 306 104 UMQ UMQ . O 11 CLA B 1 201 201 CLA CLA . P 12 OPC B 1 202 1 OPC OPC . Q 13 SQD B 1 203 11 SQD SQD . R 9 HEM C 1 301 301 HEM HEM . S 14 FES D 1 200 200 FES FES . T 15 BCR G 1 101 101 BCR BCR . U 12 OPC H 1 30 2 OPC OPC . V 16 HOH A 1 401 401 HOH HOH . W 16 HOH B 1 211 211 HOH HOH . W 16 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BCR . . . T 15 -38.536 80.694 4.737 1 59.45 ? C1 BCR 101 G 1 HETATM 2 C C2 BCR . . . T 15 -38.856 81.795 5.75 1 58.19 ? C2 BCR 101 G 1 HETATM 3 C C3 BCR . . . T 15 -40.277 82.326 5.62 1 57.3 ? C3 BCR 101 G 1 HETATM 4 C C4 BCR . . . T 15 -41.293 81.202 5.766 1 57.78 ? C4 BCR 101 G 1 HETATM 5 C C5 BCR . . . T 15 -40.923 79.961 4.982 1 58.86 ? C5 BCR 101 G 1 HETATM 6 C C6 BCR . . . T 15 -39.647 79.658 4.592 1 59.95 ? C6 BCR 101 G 1 HETATM 7 C C7 BCR . . . T 15 -39.274 78.503 4.081 1 60.95 ? C7 BCR 101 G 1 HETATM 8 C C8 BCR . . . T 15 -38.862 77.867 3.011 1 65.68 ? C8 BCR 101 G 1 HETATM 9 C C9 BCR . . . T 15 -38.668 76.834 2.285 1 66.15 ? C9 BCR 101 G 1 HETATM 10 C C10 BCR . . . T 15 -38.018 76.801 1.083 1 66.36 ? C10 BCR 101 G 1 HETATM 11 C C11 BCR . . . T 15 -37.391 77.786 0.4 1 66.49 ? C11 BCR 101 G 1 HETATM 12 C C33 BCR . . . T 15 -42.09 79.075 4.682 1 59.07 ? C33 BCR 101 G 1 HETATM 13 C C31 BCR . . . T 15 -37.222 80.021 5.14 1 59 ? C31 BCR 101 G 1 HETATM 14 C C32 BCR . . . T 15 -38.345 81.314 3.358 1 61.59 ? C32 BCR 101 G 1 HETATM 15 C C34 BCR . . . T 15 -39.264 75.542 2.765 1 66.3 ? C34 BCR 101 G 1 HETATM 16 C C12 BCR . . . T 15 -36.795 77.5 -0.787 1 66.32 ? C12 BCR 101 G 1 HETATM 17 C C13 BCR . . . T 15 -36.129 78.356 -1.609 1 66.1 ? C13 BCR 101 G 1 HETATM 18 C C14 BCR . . . T 15 -35.604 77.874 -2.773 1 66.3 ? C14 BCR 101 G 1 HETATM 19 C C15 BCR . . . T 15 -34.912 78.586 -3.701 1 66.44 ? C15 BCR 101 G 1 HETATM 20 C C16 BCR . . . T 15 -34.418 78.04 -4.841 1 66.38 ? C16 BCR 101 G 1 HETATM 21 C C17 BCR . . . T 15 -33.728 78.741 -5.779 1 66.39 ? C17 BCR 101 G 1 HETATM 22 C C18 BCR . . . T 15 -33.208 78.232 -6.949 1 66.48 ? C18 BCR 101 G 1 HETATM 23 C C19 BCR . . . T 15 -32.523 79.026 -7.822 1 66.4 ? C19 BCR 101 G 1 HETATM 24 C C20 BCR . . . T 15 -31.992 78.565 -8.98 1 66.41 ? C20 BCR 101 G 1 HETATM 25 C C21 BCR . . . T 15 -31.308 79.326 -9.87 1 66.44 ? C21 BCR 101 G 1 HETATM 26 C C22 BCR . . . T 15 -30.777 78.845 -11.042 1 66.69 ? C22 BCR 101 G 1 HETATM 27 C C23 BCR . . . T 15 -30.141 79.599 -11.858 1 67.1 ? C23 BCR 101 G 1 HETATM 28 C C24 BCR . . . T 15 -29.371 80.246 -12.564 1 72.74 ? C24 BCR 101 G 1 HETATM 29 C C25 BCR . . . T 15 -28.515 80.707 -13.406 1 75.74 ? C25 BCR 101 G 1 HETATM 30 C C26 BCR . . . T 15 -28.662 81.934 -13.945 1 76.63 ? C26 BCR 101 G 1 HETATM 31 C C27 BCR . . . T 15 -27.575 82.965 -13.695 1 76.71 ? C27 BCR 101 G 1 HETATM 32 C C28 BCR . . . T 15 -26.242 82.261 -13.412 1 76.73 ? C28 BCR 101 G 1 HETATM 33 C C29 BCR . . . T 15 -26.105 80.899 -14.108 1 76.72 ? C29 BCR 101 G 1 HETATM 34 C C30 BCR . . . T 15 -27.265 79.925 -13.835 1 76.93 ? C30 BCR 101 G 1 HETATM 35 C C35 BCR . . . T 15 -35.983 79.805 -1.228 1 66.09 ? C35 BCR 101 G 1 HETATM 36 C C36 BCR . . . T 15 -33.365 76.779 -7.32 1 66.33 ? C36 BCR 101 G 1 HETATM 37 C C37 BCR . . . T 15 -30.918 77.392 -11.443 1 66.29 ? C37 BCR 101 G 1 HETATM 38 C C38 BCR . . . T 15 -29.841 82.286 -14.819 1 76.74 ? C38 BCR 101 G 1 HETATM 39 C C39 BCR . . . T 15 -26.817 78.918 -12.774 1 76.78 ? C39 BCR 101 G 1 HETATM 40 C C40 BCR . . . T 15 -27.583 79.177 -15.134 1 77.26 ? C40 BCR 101 G 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #