data_2ZT9 # _model_server_result.job_id YfwY0RsnC943ZWnpoqSzwQ _model_server_result.datetime_utc '2024-11-22 05:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":203}' # _entry.id 2ZT9 # _exptl.entry_id 2ZT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 795.116 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZT9 _cell.length_a 159.225 _cell.length_b 159.225 _cell.length_c 365.886 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 759 n n O6 C1 SQD sing 760 n n C44 C45 SQD sing 761 n n C44 H441 SQD sing 762 n n C44 H442 SQD sing 763 n n C45 C46 SQD sing 764 n n C45 O47 SQD sing 765 n n C45 H45 SQD sing 766 n n C46 O48 SQD sing 767 n n C46 H461 SQD sing 768 n n C46 H462 SQD sing 769 n n O47 C7 SQD sing 770 n n C7 O49 SQD doub 771 n n C7 C8 SQD sing 772 n n C8 C9 SQD sing 773 n n C8 H81 SQD sing 774 n n C8 H82 SQD sing 775 n n C9 C10 SQD sing 776 n n C9 H91 SQD sing 777 n n C9 H92 SQD sing 778 n n C10 C11 SQD sing 779 n n C10 H101 SQD sing 780 n n C10 H102 SQD sing 781 n n C11 C12 SQD sing 782 n n C11 H111 SQD sing 783 n n C11 H112 SQD sing 784 n n C12 C13 SQD sing 785 n n C12 H121 SQD sing 786 n n C12 H122 SQD sing 787 n n C13 C14 SQD sing 788 n n C13 H131 SQD sing 789 n n C13 H132 SQD sing 790 n n C14 C15 SQD sing 791 n n C14 H141 SQD sing 792 n n C14 H142 SQD sing 793 n n C15 C16 SQD sing 794 n n C15 H151 SQD sing 795 n n C15 H152 SQD sing 796 n n C16 C17 SQD sing 797 n n C16 H161 SQD sing 798 n n C16 H162 SQD sing 799 n n C17 C18 SQD sing 800 n n C17 H171 SQD sing 801 n n C17 H172 SQD sing 802 n n C18 C19 SQD sing 803 n n C18 H181 SQD sing 804 n n C18 H182 SQD sing 805 n n C19 C20 SQD sing 806 n n C19 H191 SQD sing 807 n n C19 H192 SQD sing 808 n n C20 C21 SQD sing 809 n n C20 H201 SQD sing 810 n n C20 H202 SQD sing 811 n n C21 C22 SQD sing 812 n n C21 H211 SQD sing 813 n n C21 H212 SQD sing 814 n n C22 H221 SQD sing 815 n n C22 H222 SQD sing 816 n n C22 H223 SQD sing 817 n n O48 C23 SQD sing 818 n n C23 O10 SQD doub 819 n n C23 C24 SQD sing 820 n n C24 C25 SQD sing 821 n n C24 H241 SQD sing 822 n n C24 H242 SQD sing 823 n n C25 C26 SQD sing 824 n n C25 H251 SQD sing 825 n n C25 H252 SQD sing 826 n n C26 C27 SQD sing 827 n n C26 H261 SQD sing 828 n n C26 H262 SQD sing 829 n n C27 C28 SQD sing 830 n n C27 H271 SQD sing 831 n n C27 H272 SQD sing 832 n n C28 C29 SQD sing 833 n n C28 H281 SQD sing 834 n n C28 H282 SQD sing 835 n n C29 C30 SQD sing 836 n n C29 H291 SQD sing 837 n n C29 H292 SQD sing 838 n n C30 C31 SQD sing 839 n n C30 H301 SQD sing 840 n n C30 H302 SQD sing 841 n n C31 C32 SQD sing 842 n n C31 H311 SQD sing 843 n n C31 H312 SQD sing 844 n n C32 C33 SQD sing 845 n n C32 H321 SQD sing 846 n n C32 H322 SQD sing 847 n n C33 C34 SQD sing 848 n n C33 H331 SQD sing 849 n n C33 H332 SQD sing 850 n n C34 C35 SQD sing 851 n n C34 H341 SQD sing 852 n n C34 H342 SQD sing 853 n n C35 C36 SQD sing 854 n n C35 H351 SQD sing 855 n n C35 H352 SQD sing 856 n n C36 C37 SQD sing 857 n n C36 H361 SQD sing 858 n n C36 H362 SQD sing 859 n n C37 C38 SQD sing 860 n n C37 H371 SQD sing 861 n n C37 H372 SQD sing 862 n n C38 H381 SQD sing 863 n n C38 H382 SQD sing 864 n n C38 H383 SQD sing 865 n n C1 C2 SQD sing 866 n n C1 O5 SQD sing 867 n n C1 H1 SQD sing 868 n n C2 O2 SQD sing 869 n n C2 C3 SQD sing 870 n n C2 H2 SQD sing 871 n n O2 HO2 SQD sing 872 n n C3 O3 SQD sing 873 n n C3 C4 SQD sing 874 n n C3 H3 SQD sing 875 n n O3 HO3 SQD sing 876 n n C4 O4 SQD sing 877 n n C4 C5 SQD sing 878 n n C4 H4 SQD sing 879 n n O4 HO4 SQD sing 880 n n C5 C6 SQD sing 881 n n C5 O5 SQD sing 882 n n C5 H5 SQD sing 883 n n C6 S SQD sing 884 n n C6 H61 SQD sing 885 n n C6 H62 SQD sing 886 n n S O7 SQD doub 887 n n S O8 SQD sing 888 n n S O9 SQD doub 889 n n O8 HO8 SQD sing 890 n n # _atom_sites.entry_id 2ZT9 _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 UMQ A 1 304 101 UMQ UMQ . M 10 UMQ A 1 305 103 UMQ UMQ . N 10 UMQ A 1 306 104 UMQ UMQ . O 11 CLA B 1 201 201 CLA CLA . P 12 OPC B 1 202 1 OPC OPC . Q 13 SQD B 1 203 11 SQD SQD . R 9 HEM C 1 301 301 HEM HEM . S 14 FES D 1 200 200 FES FES . T 15 BCR G 1 101 101 BCR BCR . U 12 OPC H 1 30 2 OPC OPC . V 16 HOH A 1 401 401 HOH HOH . W 16 HOH B 1 211 211 HOH HOH . W 16 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . Q 13 -33.698 97.977 21.018 1 88.09 ? O6 SQD 203 B 1 HETATM 2 C C44 SQD . . . Q 13 -33.855 98.657 22.253 1 93.49 ? C44 SQD 203 B 1 HETATM 3 C C45 SQD . . . Q 13 -34.871 97.776 22.955 1 98.17 ? C45 SQD 203 B 1 HETATM 4 C C46 SQD . . . Q 13 -34.347 97.275 24.298 1 99.94 ? C46 SQD 203 B 1 HETATM 5 O O47 SQD . . . Q 13 -36.144 98.431 23.046 1 100.64 ? O47 SQD 203 B 1 HETATM 6 C C7 SQD . . . Q 13 -37.169 97.805 22.2 1 102.4 ? C7 SQD 203 B 1 HETATM 7 O O49 SQD . . . Q 13 -38.081 98.505 21.778 1 102.52 ? O49 SQD 203 B 1 HETATM 8 C C8 SQD . . . Q 13 -37.114 96.325 21.845 1 103.31 ? C8 SQD 203 B 1 HETATM 9 C C9 SQD . . . Q 13 -38.496 95.778 21.498 1 104.58 ? C9 SQD 203 B 1 HETATM 10 C C10 SQD . . . Q 13 -38.871 94.625 22.419 1 105.96 ? C10 SQD 203 B 1 HETATM 11 C C11 SQD . . . Q 13 -40.092 93.884 21.887 1 107.59 ? C11 SQD 203 B 1 HETATM 12 C C12 SQD . . . Q 13 -41.333 94.147 22.741 1 109.28 ? C12 SQD 203 B 1 HETATM 13 C C13 SQD . . . Q 13 -42.618 93.916 21.945 1 110.67 ? C13 SQD 203 B 1 HETATM 14 C C14 SQD . . . Q 13 -43.302 92.6 22.321 1 111.77 ? C14 SQD 203 B 1 HETATM 15 C C15 SQD . . . Q 13 -43.86 91.859 21.104 1 112.3 ? C15 SQD 203 B 1 HETATM 16 C C16 SQD . . . Q 13 -43.708 90.346 21.252 1 113.1 ? C16 SQD 203 B 1 HETATM 17 C C17 SQD . . . Q 13 -44.946 89.716 21.89 1 114.35 ? C17 SQD 203 B 1 HETATM 18 C C18 SQD . . . Q 13 -44.655 88.361 22.542 1 115.33 ? C18 SQD 203 B 1 HETATM 19 C C19 SQD . . . Q 13 -45.508 88.149 23.797 1 116.07 ? C19 SQD 203 B 1 HETATM 20 C C20 SQD . . . Q 13 -45.722 86.672 24.141 1 116.36 ? C20 SQD 203 B 1 HETATM 21 C C21 SQD . . . Q 13 -46.471 86.523 25.469 1 116.58 ? C21 SQD 203 B 1 HETATM 22 C C22 SQD . . . Q 13 -47.108 85.156 25.622 1 115.95 ? C22 SQD 203 B 1 HETATM 23 O O48 SQD . . . Q 13 -34.953 95.995 24.507 1 102.66 ? O48 SQD 203 B 1 HETATM 24 C C23 SQD . . . Q 13 -34.194 94.75 24.559 1 104.39 ? C23 SQD 203 B 1 HETATM 25 O O10 SQD . . . Q 13 -33.323 94.62 25.405 1 104.37 ? O10 SQD 203 B 1 HETATM 26 C C24 SQD . . . Q 13 -34.491 93.628 23.583 1 105.71 ? C24 SQD 203 B 1 HETATM 27 C C25 SQD . . . Q 13 -35.635 92.759 24.099 1 107.23 ? C25 SQD 203 B 1 HETATM 28 C C26 SQD . . . Q 13 -35.281 91.276 24.035 1 109.02 ? C26 SQD 203 B 1 HETATM 29 C C27 SQD . . . Q 13 -35.411 90.619 25.408 1 110.97 ? C27 SQD 203 B 1 HETATM 30 C C28 SQD . . . Q 13 -35.966 89.199 25.319 1 112.77 ? C28 SQD 203 B 1 HETATM 31 C C29 SQD . . . Q 13 -35.832 88.477 26.66 1 114.63 ? C29 SQD 203 B 1 HETATM 32 C C30 SQD . . . Q 13 -37.145 87.825 27.089 1 116.3 ? C30 SQD 203 B 1 HETATM 33 C C31 SQD . . . Q 13 -37.068 86.303 26.994 1 117.74 ? C31 SQD 203 B 1 HETATM 34 C C32 SQD . . . Q 13 -38.436 85.686 26.688 1 119.09 ? C32 SQD 203 B 1 HETATM 35 C C33 SQD . . . Q 13 -38.459 84.999 25.317 1 120.38 ? C33 SQD 203 B 1 HETATM 36 C C34 SQD . . . Q 13 -38.144 83.499 25.403 1 121.17 ? C34 SQD 203 B 1 HETATM 37 C C35 SQD . . . Q 13 -38.693 82.718 24.208 1 121.56 ? C35 SQD 203 B 1 HETATM 38 C C36 SQD . . . Q 13 -39.423 81.449 24.651 1 121.77 ? C36 SQD 203 B 1 HETATM 39 C C37 SQD . . . Q 13 -40.286 80.869 23.53 1 121.63 ? C37 SQD 203 B 1 HETATM 40 C C38 SQD . . . Q 13 -41.48 80.116 24.076 1 121.22 ? C38 SQD 203 B 1 HETATM 41 C C1 SQD . . . Q 13 -32.42 98.162 20.459 1 84.14 ? C1 SQD 203 B 1 HETATM 42 C C2 SQD . . . Q 13 -31.628 96.878 20.288 1 82.9 ? C2 SQD 203 B 1 HETATM 43 O O2 SQD . . . Q 13 -31.518 96.177 21.529 1 81.91 ? O2 SQD 203 B 1 HETATM 44 C C3 SQD . . . Q 13 -30.252 97.305 19.773 1 82.78 ? C3 SQD 203 B 1 HETATM 45 O O3 SQD . . . Q 13 -29.452 96.154 19.48 1 82.23 ? O3 SQD 203 B 1 HETATM 46 C C4 SQD . . . Q 13 -30.344 98.24 18.549 1 82.3 ? C4 SQD 203 B 1 HETATM 47 O O4 SQD . . . Q 13 -29.075 98.877 18.337 1 82.37 ? O4 SQD 203 B 1 HETATM 48 C C5 SQD . . . Q 13 -31.441 99.299 18.715 1 81.51 ? C5 SQD 203 B 1 HETATM 49 C C6 SQD . . . Q 13 -31.801 100.044 17.436 1 80.59 ? C6 SQD 203 B 1 HETATM 50 O O5 SQD . . . Q 13 -32.618 98.641 19.15 1 82.26 ? O5 SQD 203 B 1 HETATM 51 S S SQD . . . Q 13 -32.595 101.506 17.707 1 79.43 ? S SQD 203 B 1 HETATM 52 O O7 SQD . . . Q 13 -33.434 102.019 16.592 1 79.84 ? O7 SQD 203 B 1 HETATM 53 O O8 SQD . . . Q 13 -32.822 102.021 19.093 1 79.03 ? O8 SQD 203 B 1 HETATM 54 O O9 SQD . . . Q 13 -33.835 100.752 17.979 1 80.24 ? O9 SQD 203 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #