data_2ZT9
#
_model_server_result.job_id            Qs9ZyP0BB4m0awshJoADQQ 
_model_server_result.datetime_utc      '2024-11-22 06:04:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":301}' 
#
_entry.id    2ZT9 
#
_exptl.entry_id    2ZT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ZT9 
_cell.length_a            159.225 
_cell.length_b            159.225 
_cell.length_c            365.886 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 J N N 
? 9 K N N 
? 9 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 375 n n 
CHA C4D HEM doub 376 n n 
CHA HHA HEM sing 377 n n 
CHB C4A HEM sing 378 n n 
CHB C1B HEM doub 379 n n 
CHB HHB HEM sing 380 n n 
CHC C4B HEM sing 381 n n 
CHC C1C HEM doub 382 n n 
CHC HHC HEM sing 383 n n 
CHD C4C HEM doub 384 n n 
CHD C1D HEM sing 385 n n 
CHD HHD HEM sing 386 n n 
C1A C2A HEM doub 387 n y 
C1A NA HEM sing 388 n y 
C2A C3A HEM sing 389 n y 
C2A CAA HEM sing 390 n n 
C3A C4A HEM doub 391 n y 
C3A CMA HEM sing 392 n n 
C4A NA HEM sing 393 n y 
CMA HMA HEM sing 394 n n 
CMA HMAA HEM sing 395 n n 
CMA HMAB HEM sing 396 n n 
CAA CBA HEM sing 397 n n 
CAA HAA HEM sing 398 n n 
CAA HAAA HEM sing 399 n n 
CBA CGA HEM sing 400 n n 
CBA HBA HEM sing 401 n n 
CBA HBAA HEM sing 402 n n 
CGA O1A HEM doub 403 n n 
CGA O2A HEM sing 404 n n 
C1B C2B HEM sing 405 n n 
C1B NB HEM sing 406 n n 
C2B C3B HEM doub 407 n n 
C2B CMB HEM sing 408 n n 
C3B C4B HEM sing 409 n n 
C3B CAB HEM sing 410 n n 
C4B NB HEM doub 411 n n 
CMB HMB HEM sing 412 n n 
CMB HMBA HEM sing 413 n n 
CMB HMBB HEM sing 414 n n 
CAB CBB HEM doub 415 n n 
CAB HAB HEM sing 416 n n 
CBB HBB HEM sing 417 n n 
CBB HBBA HEM sing 418 n n 
C1C C2C HEM sing 419 n y 
C1C NC HEM sing 420 n y 
C2C C3C HEM doub 421 n y 
C2C CMC HEM sing 422 n n 
C3C C4C HEM sing 423 n y 
C3C CAC HEM sing 424 n n 
C4C NC HEM sing 425 n y 
CMC HMC HEM sing 426 n n 
CMC HMCA HEM sing 427 n n 
CMC HMCB HEM sing 428 n n 
CAC CBC HEM doub 429 n n 
CAC HAC HEM sing 430 n n 
CBC HBC HEM sing 431 n n 
CBC HBCA HEM sing 432 n n 
C1D C2D HEM sing 433 n n 
C1D ND HEM doub 434 n n 
C2D C3D HEM doub 435 n n 
C2D CMD HEM sing 436 n n 
C3D C4D HEM sing 437 n n 
C3D CAD HEM sing 438 n n 
C4D ND HEM sing 439 n n 
CMD HMD HEM sing 440 n n 
CMD HMDA HEM sing 441 n n 
CMD HMDB HEM sing 442 n n 
CAD CBD HEM sing 443 n n 
CAD HAD HEM sing 444 n n 
CAD HADA HEM sing 445 n n 
CBD CGD HEM sing 446 n n 
CBD HBD HEM sing 447 n n 
CBD HBDA HEM sing 448 n n 
CGD O1D HEM doub 449 n n 
CGD O2D HEM sing 450 n n 
O2A H2A HEM sing 451 n n 
O2D H2D HEM sing 452 n n 
FE NA HEM sing 453 n n 
FE NB HEM sing 454 n n 
FE NC HEM sing 455 n n 
FE ND HEM sing 456 n n 
#
_atom_sites.entry_id                     2ZT9 
_atom_sites.fract_transf_matrix[1][1]    0.00628 
_atom_sites.fract_transf_matrix[1][2]    0.003626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 HEM A 1 301 301 HEM HEM . 
J 9 HEM A 1 302 302 HEM HEM . 
K 9 HEM A 1 303 303 HEM HEM . 
L 10 UMQ A 1 304 101 UMQ UMQ . 
M 10 UMQ A 1 305 103 UMQ UMQ . 
N 10 UMQ A 1 306 104 UMQ UMQ . 
O 11 CLA B 1 201 201 CLA CLA . 
P 12 OPC B 1 202 1 OPC OPC . 
Q 13 SQD B 1 203 11 SQD SQD . 
R 9 HEM C 1 301 301 HEM HEM . 
S 14 FES D 1 200 200 FES FES . 
T 15 BCR G 1 101 101 BCR BCR . 
U 12 OPC H 1 30 2 OPC OPC . 
V 16 HOH A 1 401 401 HOH HOH . 
W 16 HOH B 1 211 211 HOH HOH . 
W 16 HOH B 2 212 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . R 9 -76.828 44.862 -12.855 1 56.28 ? CHA HEM 301 C 1 
HETATM 2 C CHB HEM . . . R 9 -74.928 48.511 -10.301 1 56.02 ? CHB HEM 301 C 1 
HETATM 3 C CHC HEM . . . R 9 -75.495 46.082 -6.189 1 54.01 ? CHC HEM 301 C 1 
HETATM 4 C CHD HEM . . . R 9 -76.11 42.115 -8.88 1 55.34 ? CHD HEM 301 C 1 
HETATM 5 C C1A HEM . . . R 9 -76.365 46.114 -12.509 1 56.86 ? C1A HEM 301 C 1 
HETATM 6 C C2A HEM . . . R 9 -76.319 47.289 -13.358 1 57.22 ? C2A HEM 301 C 1 
HETATM 7 C C3A HEM . . . R 9 -75.796 48.293 -12.642 1 57.11 ? C3A HEM 301 C 1 
HETATM 8 C C4A HEM . . . R 9 -75.496 47.787 -11.317 1 55.93 ? C4A HEM 301 C 1 
HETATM 9 C CMA HEM . . . R 9 -75.539 49.741 -13.12 1 56.41 ? CMA HEM 301 C 1 
HETATM 10 C CAA HEM . . . R 9 -76.792 47.366 -14.82 1 58.34 ? CAA HEM 301 C 1 
HETATM 11 C CBA HEM . . . R 9 -75.615 47.146 -15.766 1 61.61 ? CBA HEM 301 C 1 
HETATM 12 C CGA HEM . . . R 9 -76.088 46.688 -17.132 1 63.4 ? CGA HEM 301 C 1 
HETATM 13 O O1A HEM . . . R 9 -77.105 45.931 -17.207 1 64.77 ? O1A HEM 301 C 1 
HETATM 14 O O2A HEM . . . R 9 -75.443 47.082 -18.146 1 62.68 ? O2A HEM 301 C 1 
HETATM 15 C C1B HEM . . . R 9 -74.907 48.196 -8.966 1 55 ? C1B HEM 301 C 1 
HETATM 16 C C2B HEM . . . R 9 -74.455 49.063 -7.906 1 53.91 ? C2B HEM 301 C 1 
HETATM 17 C C3B HEM . . . R 9 -74.606 48.408 -6.749 1 54.48 ? C3B HEM 301 C 1 
HETATM 18 C C4B HEM . . . R 9 -75.163 47.097 -7.056 1 54.24 ? C4B HEM 301 C 1 
HETATM 19 C CMB HEM . . . R 9 -73.903 50.489 -8.131 1 53.59 ? CMB HEM 301 C 1 
HETATM 20 C CAB HEM . . . R 9 -74.247 48.945 -5.337 1 55.13 ? CAB HEM 301 C 1 
HETATM 21 C CBB HEM . . . R 9 -74.879 50.004 -4.815 1 55 ? CBB HEM 301 C 1 
HETATM 22 C C1C HEM . . . R 9 -75.702 44.773 -6.57 1 53.84 ? C1C HEM 301 C 1 
HETATM 23 C C2C HEM . . . R 9 -75.836 43.631 -5.679 1 53.77 ? C2C HEM 301 C 1 
HETATM 24 C C3C HEM . . . R 9 -76.014 42.546 -6.438 1 53.31 ? C3C HEM 301 C 1 
HETATM 25 C C4C HEM . . . R 9 -75.981 42.96 -7.819 1 53.52 ? C4C HEM 301 C 1 
HETATM 26 C CMC HEM . . . R 9 -75.794 43.682 -4.131 1 53.75 ? CMC HEM 301 C 1 
HETATM 27 C CAC HEM . . . R 9 -76.214 41.087 -5.972 1 52.75 ? CAC HEM 301 C 1 
HETATM 28 C CBC HEM . . . R 9 -77.095 40.757 -5.023 1 53.55 ? CBC HEM 301 C 1 
HETATM 29 C C1D HEM . . . R 9 -76.359 42.443 -10.185 1 56.23 ? C1D HEM 301 C 1 
HETATM 30 C C2D HEM . . . R 9 -76.615 41.496 -11.25 1 57.08 ? C2D HEM 301 C 1 
HETATM 31 C C3D HEM . . . R 9 -76.839 42.359 -12.498 1 58 ? C3D HEM 301 C 1 
HETATM 32 C C4D HEM . . . R 9 -76.701 43.733 -12.062 1 57.17 ? C4D HEM 301 C 1 
HETATM 33 C CMD HEM . . . R 9 -76.647 39.952 -11.16 1 56.61 ? CMD HEM 301 C 1 
HETATM 34 C CAD HEM . . . R 9 -77.165 41.864 -13.921 1 59.34 ? CAD HEM 301 C 1 
HETATM 35 C CBD HEM . . . R 9 -78.686 41.884 -14.065 1 61.95 ? CBD HEM 301 C 1 
HETATM 36 C CGD HEM . . . R 9 -79.038 41.202 -15.355 1 63.48 ? CGD HEM 301 C 1 
HETATM 37 O O1D HEM . . . R 9 -79.516 40.037 -15.306 1 64.29 ? O1D HEM 301 C 1 
HETATM 38 O O2D HEM . . . R 9 -78.822 41.828 -16.426 1 64.12 ? O2D HEM 301 C 1 
HETATM 39 N NA HEM . . . R 9 -75.845 46.462 -11.268 1 55.43 ? NA HEM 301 C 1 
HETATM 40 N NB HEM . . . R 9 -75.33 47.012 -8.419 1 55.1 ? NB HEM 301 C 1 
HETATM 41 N NC HEM . . . R 9 -75.796 44.316 -7.874 1 53.92 ? NC HEM 301 C 1 
HETATM 42 N ND HEM . . . R 9 -76.412 43.729 -10.697 1 56.29 ? ND HEM 301 C 1 
HETATM 43 FE FE HEM . . . R 9 -75.832 45.384 -9.613 1 55.56 ? FE HEM 301 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#